Wall clock time and date at job start Mon Mar 30 2020 02:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46789 * 2 1 4 4 C 1.53002 * 109.47387 * 240.00770 * 2 1 3 5 5 C 1.52996 * 109.47215 * 120.00006 * 2 1 3 6 6 H 1.09002 * 115.54951 * 325.58620 * 5 2 1 7 7 C 1.53002 * 117.49888 * 111.25646 * 5 2 1 8 8 C 1.53000 * 117.50107 * 179.91408 * 5 2 1 9 9 H 1.09008 * 117.49673 * 359.97438 * 8 5 2 10 10 C 1.52996 * 117.49997 * 144.99643 * 8 5 2 11 11 O 1.42899 * 109.46972 * 185.00027 * 10 8 5 12 12 C 1.34935 * 116.99998 * 180.02562 * 11 10 8 13 13 H 1.08003 * 119.99418 * 0.02562 * 12 11 10 14 14 C 1.38630 * 120.00191 * 179.97438 * 12 11 10 15 15 N 1.31588 * 120.00040 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00035 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.46911 * 90.00633 * 16 14 12 18 18 H 1.48497 * 109.47367 * 209.99979 * 16 14 12 19 19 H 1.48497 * 109.47443 * 330.00761 * 16 14 12 20 20 H 1.09001 * 109.47221 * 299.99806 * 1 2 3 21 21 H 1.09002 * 109.47061 * 60.00084 * 1 2 3 22 22 H 1.08997 * 109.47080 * 179.97438 * 1 2 3 23 23 H 1.09006 * 109.46786 * 179.97438 * 3 2 1 24 24 H 1.08998 * 109.47808 * 300.00261 * 3 2 1 25 25 H 1.09000 * 109.46915 * 60.00635 * 3 2 1 26 26 H 1.09011 * 109.46306 * 299.99594 * 4 2 1 27 27 H 1.08998 * 109.47293 * 59.99329 * 4 2 1 28 28 H 1.09000 * 109.46895 * 180.02562 * 4 2 1 29 29 H 1.09000 * 117.49996 * 215.00804 * 7 5 2 30 30 H 1.08998 * 117.49632 * 359.97438 * 7 5 2 31 31 H 1.08994 * 109.47531 * 305.00179 * 10 8 5 32 32 H 1.09001 * 109.46964 * 65.00269 * 10 8 5 33 33 H 0.97000 * 119.99692 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 2.0400 -0.7212 1.2492 6 1 1.4318 -0.5967 2.1452 7 6 2.7394 -2.0676 1.0516 8 6 3.5550 -0.8298 1.4333 9 1 4.1884 -0.3878 0.6641 10 6 4.1004 -0.7553 2.8608 11 8 5.5289 -0.7569 2.8256 12 6 6.1710 -0.6956 4.0108 13 1 5.6052 -0.6486 4.9295 14 6 7.5567 -0.6939 4.0492 15 7 8.2460 -0.7517 2.9298 16 14 8.4455 -0.6082 5.6899 17 1 8.6808 -1.9838 6.1978 18 1 9.7477 0.0831 5.5121 19 1 7.6148 0.1438 6.6643 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 3.1300 1.4426 0.0005 24 1 1.6766 1.9565 -0.8899 25 1 1.6766 1.9563 0.8900 26 1 1.6767 -1.7488 -1.2493 27 1 1.6767 -0.2072 -2.1393 28 1 3.1301 -0.7214 -1.2490 29 1 2.5913 -2.8289 1.8174 30 1 2.8357 -2.4397 0.0316 31 1 3.7497 0.1605 3.3364 32 1 3.7500 -1.6170 3.4290 33 1 9.2157 -0.7501 2.9567 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703543087.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:45 Heat of formation + Delta-G solvation = -51.354226 kcal Electronic energy + Delta-G solvation = -12721.921934 eV Core-core repulsion = 10554.626990 eV Total energy + Delta-G solvation = -2167.294944 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.25432 -38.09423 -35.10243 -33.76039 -28.67202 -28.08516 -27.87678 -26.05437 -23.76780 -21.64633 -19.78939 -19.10368 -17.59280 -16.64264 -15.91072 -15.71082 -15.52031 -14.92674 -14.63818 -14.20301 -13.51289 -13.43896 -13.15872 -12.86178 -12.81041 -12.51456 -12.23836 -12.14388 -11.97474 -11.82207 -11.68296 -11.46012 -11.27830 -10.83009 -10.60565 -10.11666 -8.20350 -5.91177 1.38020 1.45573 1.54862 2.30979 2.82227 3.12771 3.43744 3.85763 3.92665 4.08702 4.15214 4.31174 4.41127 4.57673 4.65588 4.76143 4.81465 4.86594 4.87740 4.88795 4.95327 5.08125 5.12072 5.18509 5.20085 5.24827 5.34612 5.40723 5.51048 5.59443 6.18699 7.21908 8.04084 9.05041 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.069863 B = 0.006640 C = 0.006601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 400.689016 B = 4215.716130 C = 4240.778103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.039 4.039 3 C -0.140 4.140 4 C -0.145 4.145 5 C -0.114 4.114 6 H 0.107 0.893 7 C -0.170 4.170 8 C -0.159 4.159 9 H 0.086 0.914 10 C 0.101 3.899 11 O -0.337 6.337 12 C -0.384 4.384 13 H 0.071 0.929 14 C -0.043 4.043 15 N -0.940 5.940 16 Si 1.010 2.990 17 H -0.268 1.268 18 H -0.276 1.276 19 H -0.259 1.259 20 H 0.057 0.943 21 H 0.068 0.932 22 H 0.061 0.939 23 H 0.034 0.966 24 H 0.070 0.930 25 H 0.054 0.946 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.038 0.962 29 H 0.091 0.909 30 H 0.111 0.889 31 H 0.024 0.976 32 H 0.026 0.974 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.868 0.905 -4.771 15.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.039 4.039 3 C -0.198 4.198 4 C -0.202 4.202 5 C -0.132 4.132 6 H 0.125 0.875 7 C -0.206 4.206 8 C -0.177 4.177 9 H 0.104 0.896 10 C 0.024 3.976 11 O -0.253 6.253 12 C -0.463 4.463 13 H 0.089 0.911 14 C -0.236 4.236 15 N -0.585 5.585 16 Si 0.831 3.169 17 H -0.193 1.193 18 H -0.201 1.201 19 H -0.183 1.183 20 H 0.076 0.924 21 H 0.087 0.913 22 H 0.080 0.920 23 H 0.053 0.947 24 H 0.089 0.911 25 H 0.073 0.927 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.057 0.943 29 H 0.110 0.890 30 H 0.129 0.871 31 H 0.042 0.958 32 H 0.044 0.956 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -14.639 0.900 -5.004 15.497 hybrid contribution 0.709 0.027 0.880 1.130 sum -13.929 0.927 -4.124 14.557 Atomic orbital electron populations 1.21791 0.92385 1.02350 1.02355 1.20116 0.96663 0.94561 0.92554 1.21856 1.00198 0.95604 1.02118 1.22003 1.00275 1.00879 0.97012 1.22562 0.91706 0.98835 1.00071 0.87500 1.23368 1.02916 0.91036 1.03298 1.22036 0.94365 1.05041 0.96305 0.89578 1.21837 0.83218 0.97540 0.95031 1.85567 1.16019 1.93353 1.30388 1.21371 0.90458 1.50173 0.84264 0.91085 1.26311 0.96226 0.98295 1.02763 1.70211 1.06556 1.53177 1.28560 0.84709 0.77498 0.78786 0.75901 1.19337 1.20116 1.18257 0.92419 0.91346 0.92010 0.94651 0.91087 0.92710 0.91458 0.91246 0.94279 0.89019 0.87108 0.95768 0.95605 0.92950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.36 8.46 71.98 0.61 -1.75 16 2 C -0.04 -0.91 0.88 -52.18 -0.05 -0.96 16 3 C -0.14 -3.48 8.32 71.98 0.60 -2.88 16 4 C -0.14 -3.24 7.07 71.98 0.51 -2.73 16 5 C -0.11 -3.26 4.86 -10.79 -0.05 -3.32 16 6 H 0.11 2.90 8.11 -2.39 -0.02 2.89 16 7 C -0.17 -5.27 9.22 30.62 0.28 -4.99 16 8 C -0.16 -6.24 4.91 -10.77 -0.05 -6.29 16 9 H 0.09 3.74 7.07 -2.38 -0.02 3.73 16 10 C 0.10 4.81 6.30 71.98 0.45 5.26 16 11 O -0.34 -20.99 9.78 -82.04 -0.80 -21.80 16 12 C -0.38 -23.90 9.89 67.91 0.67 -23.23 16 13 H 0.07 4.11 7.77 -2.91 -0.02 4.08 16 14 C -0.04 -2.63 5.49 84.82 0.47 -2.17 16 15 N -0.94 -61.96 13.68 21.61 0.30 -61.66 16 16 Si 1.01 46.29 29.55 68.60 2.03 48.32 16 17 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 18 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 19 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 20 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 21 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 22 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 23 H 0.03 1.05 7.29 -2.38 -0.02 1.03 16 24 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.07 1.37 6.97 -2.38 -0.02 1.35 16 27 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.04 1.04 7.07 -2.39 -0.02 1.02 16 29 H 0.09 2.79 8.03 -2.39 -0.02 2.77 16 30 H 0.11 3.09 5.85 -2.39 -0.01 3.08 16 31 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.03 1.19 7.88 -2.39 -0.02 1.17 16 33 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 Total: -1.00 -72.60 271.08 6.01 -66.58 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: 1.05 Total: 11.60 kcal Atomic # 6 Polarization: -46.49 SS G_CDS: 3.44 Total: -43.05 kcal Atomic # 7 Polarization: -61.96 SS G_CDS: 0.30 Total: -61.66 kcal Atomic # 8 Polarization: -20.99 SS G_CDS: -0.80 Total: -21.80 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Total: -72.60 6.01 -66.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703543087.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.230 kcal (2) G-P(sol) polarization free energy of solvation -72.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds