Wall clock time and date at job start Mon Mar 30 2020 02:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46861 * 2 1 4 4 C 1.52994 * 109.47004 * 239.99929 * 2 1 3 5 5 C 1.53004 * 109.47211 * 119.99991 * 2 1 3 6 6 H 1.09000 * 115.55997 * 309.27396 * 5 2 1 7 7 C 1.52996 * 117.49783 * 94.96207 * 5 2 1 8 8 C 1.52998 * 60.03056 * 107.50256 * 7 5 2 9 9 H 1.09000 * 117.50341 * 107.49955 * 8 7 5 10 10 C 1.53004 * 117.49894 * 252.49751 * 8 7 5 11 11 O 1.42897 * 109.47411 * 203.77318 * 10 8 7 12 12 C 1.34926 * 117.00416 * 179.97438 * 11 10 8 13 13 H 1.08001 * 119.99573 * 0.02562 * 12 11 10 14 14 C 1.38634 * 120.00208 * 180.02562 * 12 11 10 15 15 N 1.31584 * 119.99855 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 120.00046 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.46707 * 89.99845 * 16 14 12 18 18 H 1.48496 * 109.47248 * 209.99972 * 16 14 12 19 19 H 1.48501 * 109.46925 * 330.00320 * 16 14 12 20 20 H 1.09005 * 109.47006 * 299.99588 * 1 2 3 21 21 H 1.08994 * 109.46918 * 60.00086 * 1 2 3 22 22 H 1.09003 * 109.46911 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.47297 * 184.92837 * 3 2 1 24 24 H 1.08996 * 109.47172 * 304.92857 * 3 2 1 25 25 H 1.09001 * 109.47398 * 64.93177 * 3 2 1 26 26 H 1.09003 * 109.47564 * 258.96942 * 4 2 1 27 27 H 1.08995 * 109.47382 * 18.97048 * 4 2 1 28 28 H 1.09001 * 109.47110 * 138.97008 * 4 2 1 29 29 H 1.08999 * 117.49836 * 359.97438 * 7 5 2 30 30 H 1.09006 * 117.49720 * 215.00237 * 7 5 2 31 31 H 1.08995 * 109.46895 * 323.77422 * 10 8 7 32 32 H 1.09004 * 109.47089 * 83.77441 * 10 8 7 33 33 H 0.97004 * 119.99926 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0401 -0.7213 1.2493 6 1 1.6100 -0.3875 2.1936 7 6 2.3862 -2.2056 1.1161 8 6 3.5034 -1.1701 1.2587 9 1 4.0358 -1.1316 2.2091 10 6 4.3449 -0.8633 0.0182 11 8 5.6163 -0.3496 0.4201 12 6 6.4846 -0.0270 -0.5609 13 1 6.2046 -0.1609 -1.5954 14 6 7.7361 0.4764 -0.2411 15 7 8.0770 0.6401 1.0192 16 14 8.9380 0.9237 -1.5994 17 1 8.7402 2.3434 -1.9876 18 1 10.3280 0.7324 -1.1133 19 1 8.7010 0.0509 -2.7773 20 1 -0.3633 0.5138 0.8901 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 3.1264 1.4438 -0.0883 24 1 1.6063 1.9811 -0.8425 25 1 1.7506 1.9302 0.9309 26 1 2.3465 -1.7333 -0.9848 27 1 1.2449 -0.7652 -1.9934 28 1 2.8920 -0.1791 -1.6594 29 1 2.2502 -2.6684 0.1387 30 1 2.1835 -2.8485 1.9728 31 1 4.4880 -1.7769 -0.5587 32 1 3.8313 -0.1229 -0.5952 33 1 8.9528 0.9920 1.2430 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703543096.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:48 Heat of formation + Delta-G solvation = -6.215057 kcal Electronic energy + Delta-G solvation = -13152.322414 eV Core-core repulsion = 10986.984851 eV Total energy + Delta-G solvation = -2165.337563 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.46063 -35.77138 -33.60733 -31.55405 -27.89497 -27.02656 -25.96346 -23.82498 -22.56092 -20.00689 -18.10434 -17.29306 -15.91934 -14.88089 -14.70362 -14.20072 -13.92335 -13.30364 -12.82737 -12.56357 -12.29688 -12.10362 -11.59141 -11.32100 -11.21750 -10.96705 -10.87799 -10.66643 -10.31632 -10.26016 -10.07545 -9.94882 -9.51279 -9.00493 -8.77918 -7.82830 -5.89117 -3.51701 3.33957 3.36458 3.40509 4.19392 4.35092 4.89382 5.04053 5.12877 5.29643 5.40466 5.46327 5.52209 5.71760 5.82893 5.92408 5.96092 6.01658 6.09950 6.21635 6.28184 6.31459 6.37484 6.39869 6.55054 6.66541 6.72190 6.74173 6.85155 7.02704 7.52842 8.49281 9.54571 10.27498 11.32509 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.051726 B = 0.008612 C = 0.008148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.183968 B = 3250.585579 C = 3435.635412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.036 4.036 3 C -0.145 4.145 4 C -0.170 4.170 5 C -0.142 4.142 6 H 0.098 0.902 7 C -0.188 4.188 8 C -0.128 4.128 9 H 0.109 0.891 10 C 0.079 3.921 11 O -0.298 6.298 12 C -0.356 4.356 13 H 0.060 0.940 14 C 0.021 3.979 15 N -0.890 5.890 16 Si 0.923 3.077 17 H -0.281 1.281 18 H -0.284 1.284 19 H -0.276 1.276 20 H 0.051 0.949 21 H 0.051 0.949 22 H 0.052 0.948 23 H 0.072 0.928 24 H 0.049 0.951 25 H 0.051 0.949 26 H 0.072 0.928 27 H 0.046 0.954 28 H 0.072 0.928 29 H 0.099 0.901 30 H 0.087 0.913 31 H 0.020 0.980 32 H 0.059 0.941 33 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.024 -1.939 -2.521 13.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.036 4.036 3 C -0.203 4.203 4 C -0.226 4.226 5 C -0.160 4.160 6 H 0.116 0.884 7 C -0.225 4.225 8 C -0.146 4.146 9 H 0.127 0.873 10 C 0.002 3.998 11 O -0.213 6.213 12 C -0.435 4.435 13 H 0.078 0.922 14 C -0.177 4.177 15 N -0.533 5.533 16 Si 0.750 3.250 17 H -0.208 1.208 18 H -0.209 1.209 19 H -0.201 1.201 20 H 0.070 0.930 21 H 0.070 0.930 22 H 0.071 0.929 23 H 0.091 0.909 24 H 0.068 0.932 25 H 0.070 0.930 26 H 0.090 0.910 27 H 0.065 0.935 28 H 0.091 0.909 29 H 0.117 0.883 30 H 0.106 0.894 31 H 0.038 0.962 32 H 0.076 0.924 33 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -12.843 -1.865 -2.234 13.169 hybrid contribution 0.541 0.124 -0.771 0.950 sum -12.302 -1.741 -3.006 12.783 Atomic orbital electron populations 1.21858 0.94872 1.01265 1.01142 1.19983 0.94623 0.95424 0.93604 1.21988 1.02746 0.94627 1.00895 1.22715 1.01100 1.01969 0.96805 1.22473 0.99031 0.95977 0.98557 0.88420 1.23277 1.04720 0.91947 1.02509 1.22276 0.89303 1.01484 1.01508 0.87337 1.22462 0.87357 0.96882 0.93068 1.85606 1.21456 1.81850 1.32427 1.20769 0.94847 1.41226 0.86649 0.92217 1.24938 0.96963 0.99044 0.96739 1.70026 1.20611 1.46876 1.15812 0.86004 0.80129 0.78585 0.80287 1.20761 1.20927 1.20102 0.93029 0.92980 0.92901 0.90866 0.93199 0.93018 0.90981 0.93487 0.90906 0.88265 0.89416 0.96209 0.92361 0.93332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.57 8.22 37.16 0.31 -1.27 16 2 C -0.04 -0.52 0.74 -154.51 -0.11 -0.64 16 3 C -0.15 -2.23 8.17 37.16 0.30 -1.92 16 4 C -0.17 -2.47 7.50 37.15 0.28 -2.19 16 5 C -0.14 -2.20 4.98 -90.58 -0.45 -2.66 16 6 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 7 C -0.19 -2.84 9.56 -26.73 -0.26 -3.09 16 8 C -0.13 -2.45 6.06 -90.58 -0.55 -3.00 16 9 H 0.11 2.27 8.13 -51.93 -0.42 1.84 16 10 C 0.08 1.78 4.33 37.16 0.16 1.94 16 11 O -0.30 -8.80 9.77 -16.50 -0.16 -8.96 16 12 C -0.36 -10.69 9.89 30.88 0.31 -10.38 16 13 H 0.06 1.68 7.77 -52.49 -0.41 1.28 16 14 C 0.02 0.63 5.49 -17.51 -0.10 0.53 16 15 N -0.89 -28.50 13.67 55.48 0.76 -27.74 16 16 Si 0.92 22.46 29.55 -169.99 -5.02 17.43 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 20 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 21 H 0.05 0.56 8.13 -51.93 -0.42 0.14 16 22 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.07 1.35 6.24 -51.93 -0.32 1.03 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.07 1.06 3.75 -51.93 -0.19 0.87 16 27 H 0.05 0.59 7.69 -51.93 -0.40 0.19 16 28 H 0.07 1.19 5.59 -51.93 -0.29 0.90 16 29 H 0.10 1.42 5.69 -51.93 -0.30 1.12 16 30 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.02 0.45 7.90 -51.93 -0.41 0.04 16 32 H 0.06 1.24 2.23 -51.93 -0.12 1.12 16 33 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 259.56 15.07 3.91 3.91 Total: -1.00 -32.67 259.56 -5.58 -38.25 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -4.95 Total: -0.24 kcal Atomic # 6 Polarization: -22.56 SS G_CDS: -0.11 Total: -22.67 kcal Atomic # 7 Polarization: -28.50 SS G_CDS: 0.76 Total: -27.74 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: -0.16 Total: -8.96 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -32.67 -5.58 -38.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703543096.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.036 kcal (2) G-P(sol) polarization free energy of solvation -32.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds