Wall clock time and date at job start Mon Mar 30 2020 02:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46861 * 2 1 4 4 C 1.52994 * 109.47004 * 239.99929 * 2 1 3 5 5 C 1.53004 * 109.47211 * 119.99991 * 2 1 3 6 6 H 1.09000 * 115.55997 * 309.27396 * 5 2 1 7 7 C 1.52996 * 117.49783 * 94.96207 * 5 2 1 8 8 C 1.52998 * 60.03056 * 107.50256 * 7 5 2 9 9 H 1.09000 * 117.50341 * 107.49955 * 8 7 5 10 10 C 1.53004 * 117.49894 * 252.49751 * 8 7 5 11 11 O 1.42897 * 109.47411 * 203.77318 * 10 8 7 12 12 C 1.34926 * 117.00416 * 179.97438 * 11 10 8 13 13 H 1.08001 * 119.99573 * 0.02562 * 12 11 10 14 14 C 1.38634 * 120.00208 * 180.02562 * 12 11 10 15 15 N 1.31584 * 119.99855 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 120.00046 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.46707 * 89.99845 * 16 14 12 18 18 H 1.48496 * 109.47248 * 209.99972 * 16 14 12 19 19 H 1.48501 * 109.46925 * 330.00320 * 16 14 12 20 20 H 1.09005 * 109.47006 * 299.99588 * 1 2 3 21 21 H 1.08994 * 109.46918 * 60.00086 * 1 2 3 22 22 H 1.09003 * 109.46911 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.47297 * 184.92837 * 3 2 1 24 24 H 1.08996 * 109.47172 * 304.92857 * 3 2 1 25 25 H 1.09001 * 109.47398 * 64.93177 * 3 2 1 26 26 H 1.09003 * 109.47564 * 258.96942 * 4 2 1 27 27 H 1.08995 * 109.47382 * 18.97048 * 4 2 1 28 28 H 1.09001 * 109.47110 * 138.97008 * 4 2 1 29 29 H 1.08999 * 117.49836 * 359.97438 * 7 5 2 30 30 H 1.09006 * 117.49720 * 215.00237 * 7 5 2 31 31 H 1.08995 * 109.46895 * 323.77422 * 10 8 7 32 32 H 1.09004 * 109.47089 * 83.77441 * 10 8 7 33 33 H 0.97004 * 119.99926 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0401 -0.7213 1.2493 6 1 1.6100 -0.3875 2.1936 7 6 2.3862 -2.2056 1.1161 8 6 3.5034 -1.1701 1.2587 9 1 4.0358 -1.1316 2.2091 10 6 4.3449 -0.8633 0.0182 11 8 5.6163 -0.3496 0.4201 12 6 6.4846 -0.0270 -0.5609 13 1 6.2046 -0.1609 -1.5954 14 6 7.7361 0.4764 -0.2411 15 7 8.0770 0.6401 1.0192 16 14 8.9380 0.9237 -1.5994 17 1 8.7402 2.3434 -1.9876 18 1 10.3280 0.7324 -1.1133 19 1 8.7010 0.0509 -2.7773 20 1 -0.3633 0.5138 0.8901 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 3.1264 1.4438 -0.0883 24 1 1.6063 1.9811 -0.8425 25 1 1.7506 1.9302 0.9309 26 1 2.3465 -1.7333 -0.9848 27 1 1.2449 -0.7652 -1.9934 28 1 2.8920 -0.1791 -1.6594 29 1 2.2502 -2.6684 0.1387 30 1 2.1835 -2.8485 1.9728 31 1 4.4880 -1.7769 -0.5587 32 1 3.8313 -0.1229 -0.5952 33 1 8.9528 0.9920 1.2430 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703543096.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:48 Heat of formation + Delta-G solvation = -26.892040 kcal Electronic energy + Delta-G solvation = -13153.219035 eV Core-core repulsion = 10986.984851 eV Total energy + Delta-G solvation = -2166.234184 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.80272 -37.83031 -34.89949 -33.79397 -29.28149 -28.23144 -27.57685 -25.89218 -23.77973 -21.52457 -19.74817 -19.06858 -17.71750 -16.46245 -16.31312 -15.83655 -15.53410 -14.65722 -14.41800 -14.34678 -13.55660 -13.34595 -13.27008 -12.86840 -12.79018 -12.38618 -12.26570 -12.06189 -11.95109 -11.80147 -11.62405 -11.44747 -10.96408 -10.85849 -10.49937 -9.91677 -8.17649 -5.86714 1.37809 1.45119 1.54230 2.32832 2.85599 3.15710 3.53481 3.73569 3.89893 4.03974 4.20092 4.25950 4.52102 4.59983 4.65647 4.72770 4.82827 4.84825 4.90771 4.95254 5.03137 5.09257 5.11815 5.17951 5.22636 5.26039 5.34845 5.49098 5.53934 5.62205 6.21624 7.25183 8.11125 9.08152 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.051726 B = 0.008612 C = 0.008148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.183968 B = 3250.585579 C = 3435.635412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.039 4.039 3 C -0.144 4.144 4 C -0.169 4.169 5 C -0.125 4.125 6 H 0.111 0.889 7 C -0.159 4.159 8 C -0.171 4.171 9 H 0.080 0.920 10 C 0.078 3.922 11 O -0.343 6.343 12 C -0.374 4.374 13 H 0.070 0.930 14 C -0.046 4.046 15 N -0.942 5.942 16 Si 1.005 2.995 17 H -0.269 1.269 18 H -0.277 1.277 19 H -0.258 1.258 20 H 0.059 0.941 21 H 0.064 0.936 22 H 0.064 0.936 23 H 0.030 0.970 24 H 0.067 0.933 25 H 0.057 0.943 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.047 0.953 29 H 0.112 0.888 30 H 0.109 0.891 31 H 0.015 0.985 32 H 0.073 0.927 33 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.674 -2.153 -3.877 15.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.039 4.039 3 C -0.201 4.201 4 C -0.226 4.226 5 C -0.143 4.143 6 H 0.129 0.871 7 C -0.195 4.195 8 C -0.189 4.189 9 H 0.098 0.902 10 C 0.002 3.998 11 O -0.259 6.259 12 C -0.453 4.453 13 H 0.088 0.912 14 C -0.238 4.238 15 N -0.587 5.587 16 Si 0.827 3.173 17 H -0.194 1.194 18 H -0.203 1.203 19 H -0.182 1.182 20 H 0.078 0.922 21 H 0.083 0.917 22 H 0.083 0.917 23 H 0.049 0.951 24 H 0.086 0.914 25 H 0.076 0.924 26 H 0.087 0.913 27 H 0.091 0.909 28 H 0.065 0.935 29 H 0.130 0.870 30 H 0.128 0.872 31 H 0.033 0.967 32 H 0.091 0.909 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -14.527 -2.092 -3.597 15.112 hybrid contribution 0.967 0.166 -0.321 1.032 sum -13.560 -1.925 -3.918 14.246 Atomic orbital electron populations 1.21795 0.91926 1.02444 1.02282 1.20066 0.96865 0.94223 0.92726 1.21962 1.00017 0.96065 1.02068 1.22673 1.01022 1.01294 0.97576 1.22638 0.95165 0.96594 0.99924 0.87068 1.23392 1.00170 0.91857 1.04108 1.22100 0.90899 1.07219 0.98727 0.90194 1.22735 0.85294 0.96651 0.95128 1.85538 1.24003 1.82477 1.33902 1.21303 0.95551 1.41193 0.87278 0.91229 1.26266 0.99033 0.98651 0.99869 1.70211 1.21475 1.48252 1.18742 0.84764 0.76769 0.78865 0.76885 1.19421 1.20263 1.18237 0.92172 0.91680 0.91693 0.95055 0.91367 0.92397 0.91280 0.90889 0.93451 0.87007 0.87240 0.96663 0.90939 0.93124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.49 8.22 71.98 0.59 -1.90 16 2 C -0.04 -1.03 0.74 -52.18 -0.04 -1.07 16 3 C -0.14 -4.30 8.17 71.98 0.59 -3.71 16 4 C -0.17 -4.65 7.50 71.98 0.54 -4.11 16 5 C -0.13 -3.69 4.98 -10.77 -0.05 -3.74 16 6 H 0.11 2.99 8.14 -2.39 -0.02 2.97 16 7 C -0.16 -4.50 9.56 30.59 0.29 -4.21 16 8 C -0.17 -6.71 6.06 -10.77 -0.07 -6.77 16 9 H 0.08 3.55 8.13 -2.39 -0.02 3.53 16 10 C 0.08 3.64 4.33 71.98 0.31 3.95 16 11 O -0.34 -21.24 9.77 -81.96 -0.80 -22.04 16 12 C -0.37 -23.17 9.89 67.91 0.67 -22.50 16 13 H 0.07 4.00 7.77 -2.91 -0.02 3.98 16 14 C -0.05 -2.80 5.49 84.82 0.47 -2.33 16 15 N -0.94 -62.22 13.67 21.61 0.30 -61.92 16 16 Si 1.01 46.44 29.55 68.60 2.03 48.47 16 17 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 18 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 19 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 20 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 21 H 0.06 1.13 8.13 -2.39 -0.02 1.11 16 22 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 23 H 0.03 1.18 6.24 -2.38 -0.01 1.17 16 24 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.07 1.92 3.75 -2.39 -0.01 1.91 16 27 H 0.07 1.61 7.69 -2.39 -0.02 1.59 16 28 H 0.05 1.53 5.59 -2.39 -0.01 1.52 16 29 H 0.11 2.91 5.69 -2.39 -0.01 2.90 16 30 H 0.11 2.65 8.14 -2.38 -0.02 2.63 16 31 H 0.02 0.71 7.90 -2.39 -0.02 0.69 16 32 H 0.07 3.19 2.23 -2.39 -0.01 3.18 16 33 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 Total: -1.00 -73.14 259.56 5.91 -67.23 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: 1.08 Total: 14.66 kcal Atomic # 6 Polarization: -49.70 SS G_CDS: 3.30 Total: -46.40 kcal Atomic # 7 Polarization: -62.22 SS G_CDS: 0.30 Total: -61.92 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: -0.80 Total: -22.04 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Total: -73.14 5.91 -67.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703543096.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.342 kcal (2) G-P(sol) polarization free energy of solvation -73.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds