Wall clock time and date at job start Mon Mar 30 2020 02:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47511 * 2 1 4 4 C 1.53006 * 109.47349 * 239.99847 * 2 1 3 5 5 C 1.53006 * 109.47463 * 120.00069 * 2 1 3 6 6 H 1.08994 * 115.56014 * 178.92355 * 5 2 1 7 7 C 1.52999 * 117.49523 * 33.23209 * 5 2 1 8 8 C 1.52992 * 60.03512 * 252.52578 * 7 5 2 9 9 H 1.09000 * 117.50178 * 252.47842 * 8 7 5 10 10 C 1.53005 * 117.50104 * 107.47577 * 8 7 5 11 11 O 1.42901 * 109.47089 * 119.09093 * 10 8 7 12 12 C 1.34922 * 117.00055 * 180.02562 * 11 10 8 13 13 H 1.07997 * 120.00203 * 0.02562 * 12 11 10 14 14 C 1.38634 * 120.00023 * 179.97438 * 12 11 10 15 15 N 1.31589 * 119.99736 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00279 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.46881 * 59.99897 * 16 14 12 18 18 H 1.48493 * 109.47218 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.46833 * 300.00339 * 16 14 12 20 20 H 1.09000 * 109.46851 * 322.30029 * 1 2 3 21 21 H 1.08997 * 109.46954 * 82.30120 * 1 2 3 22 22 H 1.08999 * 109.46712 * 202.30337 * 1 2 3 23 23 H 1.08996 * 109.47689 * 175.06760 * 3 2 1 24 24 H 1.08999 * 109.47072 * 295.06687 * 3 2 1 25 25 H 1.08996 * 109.46884 * 55.06273 * 3 2 1 26 26 H 1.08999 * 109.47030 * 300.00212 * 4 2 1 27 27 H 1.08999 * 109.46792 * 59.99546 * 4 2 1 28 28 H 1.08995 * 109.47292 * 179.97438 * 4 2 1 29 29 H 1.09004 * 117.49837 * 145.02069 * 7 5 2 30 30 H 1.09002 * 117.50353 * 0.02905 * 7 5 2 31 31 H 1.08990 * 109.47565 * 239.09342 * 10 8 7 32 32 H 1.09004 * 109.46542 * 359.09447 * 10 8 7 33 33 H 0.97002 * 119.99447 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2493 5 6 2.0401 -0.7213 1.2493 6 1 3.1237 -0.7951 1.3401 7 6 1.2053 -1.8876 1.7818 8 6 1.2316 -0.5584 2.5389 9 1 1.7832 -0.5251 3.4784 10 6 -0.0244 0.3133 2.4797 11 8 -0.5415 0.4938 3.7996 12 6 -1.6564 1.2435 3.9235 13 1 -2.1168 1.6755 3.0473 14 6 -2.2116 1.4585 5.1755 15 7 -1.6509 0.9317 6.2430 16 14 -3.7556 2.4958 5.3470 17 1 -4.8573 1.8762 4.5676 18 1 -4.1437 2.5730 6.7782 19 1 -3.4928 3.8634 4.8314 20 1 -0.3633 0.8131 0.6284 21 1 -0.3633 0.1377 -1.0184 22 1 -0.3633 -0.9508 0.3900 23 1 3.1265 1.4438 0.0884 24 1 1.7507 1.9302 -0.9309 25 1 1.6064 1.9812 0.8424 26 1 1.6767 -1.7489 -1.2492 27 1 1.6767 -0.2075 -2.1392 28 1 3.1300 -0.7209 -1.2495 29 1 1.7398 -2.7289 2.2232 30 1 0.2930 -2.1415 1.2420 31 1 0.2267 1.2839 2.0521 32 1 -0.7759 -0.1740 1.8585 33 1 -2.0392 1.0825 7.1191 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703543098.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:49 Heat of formation + Delta-G solvation = -24.418383 kcal Electronic energy + Delta-G solvation = -13089.296428 eV Core-core repulsion = 10923.169510 eV Total energy + Delta-G solvation = -2166.126918 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.79514 -37.85005 -34.86388 -33.79100 -29.62888 -28.18943 -27.47856 -25.82414 -23.78905 -21.50537 -19.87958 -19.00307 -17.72701 -16.56252 -16.06455 -15.68918 -15.58816 -14.81196 -14.48337 -14.21565 -13.58275 -13.35871 -13.16208 -12.96564 -12.81407 -12.38135 -12.29673 -12.10819 -11.98589 -11.84254 -11.55942 -11.45912 -10.83732 -10.81090 -10.48339 -10.02973 -8.17601 -5.87187 1.38154 1.46725 1.53766 2.32773 2.84381 3.15304 3.56753 3.70379 3.92409 3.97050 4.25641 4.26673 4.49326 4.62170 4.67317 4.71906 4.81438 4.86257 4.89678 4.94121 5.00825 5.06097 5.10847 5.17611 5.22495 5.28363 5.33883 5.44404 5.53951 5.59029 6.21380 7.25073 8.10620 9.08019 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.055954 B = 0.008201 C = 0.007676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.294661 B = 3413.366623 C = 3647.060477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.039 4.039 3 C -0.140 4.140 4 C -0.129 4.129 5 C -0.112 4.112 6 H 0.119 0.881 7 C -0.169 4.169 8 C -0.170 4.170 9 H 0.083 0.917 10 C 0.094 3.906 11 O -0.346 6.346 12 C -0.377 4.377 13 H 0.071 0.929 14 C -0.045 4.045 15 N -0.942 5.942 16 Si 1.006 2.994 17 H -0.262 1.262 18 H -0.278 1.278 19 H -0.263 1.263 20 H 0.056 0.944 21 H 0.065 0.935 22 H 0.059 0.941 23 H 0.065 0.935 24 H 0.067 0.933 25 H 0.034 0.966 26 H 0.057 0.943 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.104 0.896 30 H 0.100 0.900 31 H 0.032 0.968 32 H 0.048 0.952 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.791 -1.992 -14.495 15.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.039 4.039 3 C -0.197 4.197 4 C -0.186 4.186 5 C -0.130 4.130 6 H 0.137 0.863 7 C -0.206 4.206 8 C -0.188 4.188 9 H 0.101 0.899 10 C 0.018 3.982 11 O -0.262 6.262 12 C -0.456 4.456 13 H 0.089 0.911 14 C -0.238 4.238 15 N -0.587 5.587 16 Si 0.828 3.172 17 H -0.187 1.187 18 H -0.203 1.203 19 H -0.188 1.188 20 H 0.075 0.925 21 H 0.084 0.916 22 H 0.078 0.922 23 H 0.084 0.916 24 H 0.086 0.914 25 H 0.053 0.947 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.123 0.877 30 H 0.118 0.882 31 H 0.049 0.951 32 H 0.066 0.934 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.873 -2.087 -14.196 15.505 hybrid contribution -0.690 0.468 0.489 0.967 sum 5.183 -1.620 -13.707 14.743 Atomic orbital electron populations 1.22876 0.95915 1.02332 1.02110 1.20093 0.94626 0.95331 0.93835 1.21867 1.01384 0.94991 1.01434 1.21768 1.01403 1.00101 0.95352 1.22586 0.97828 1.00217 0.92396 0.86316 1.23258 1.02648 0.91706 1.02948 1.22125 0.99056 1.00887 0.96741 0.89913 1.22757 0.93692 0.96441 0.85287 1.85534 1.43188 1.70944 1.26584 1.21286 1.02721 1.27510 0.94072 0.91126 1.26282 1.02973 1.00470 0.94043 1.70208 1.42483 1.47445 0.98574 0.84823 0.76680 0.78123 0.77614 1.18716 1.20269 1.18801 0.92542 0.91600 0.92249 0.91589 0.91365 0.94675 0.92431 0.91718 0.91664 0.87746 0.88192 0.95051 0.93407 0.93082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.01 6.73 71.98 0.48 -4.52 16 2 C -0.04 -0.97 0.73 -52.18 -0.04 -1.01 16 3 C -0.14 -3.44 8.37 71.98 0.60 -2.84 16 4 C -0.13 -2.44 8.37 71.98 0.60 -1.84 16 5 C -0.11 -3.18 4.97 -10.77 -0.05 -3.23 16 6 H 0.12 2.92 8.14 -2.39 -0.02 2.90 16 7 C -0.17 -5.17 9.58 30.59 0.29 -4.88 16 8 C -0.17 -6.64 6.06 -10.77 -0.07 -6.70 16 9 H 0.08 3.59 8.14 -2.39 -0.02 3.57 16 10 C 0.09 4.38 4.03 71.98 0.29 4.67 16 11 O -0.35 -21.40 9.78 -81.91 -0.80 -22.20 16 12 C -0.38 -23.32 9.89 67.91 0.67 -22.64 16 13 H 0.07 4.04 7.77 -2.91 -0.02 4.01 16 14 C -0.05 -2.75 5.49 84.82 0.47 -2.29 16 15 N -0.94 -62.21 13.68 21.61 0.30 -61.91 16 16 Si 1.01 46.30 29.55 68.60 2.03 48.33 16 17 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 18 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 19 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 20 H 0.06 1.91 4.39 -2.39 -0.01 1.90 16 21 H 0.07 1.57 7.93 -2.39 -0.02 1.55 16 22 H 0.06 1.77 4.27 -2.39 -0.01 1.76 16 23 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 24 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.03 1.05 6.49 -2.39 -0.02 1.03 16 26 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.06 1.08 8.12 -2.39 -0.02 1.06 16 28 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16 30 H 0.10 2.99 5.90 -2.39 -0.01 2.98 16 31 H 0.03 1.45 5.17 -2.39 -0.01 1.43 16 32 H 0.05 2.13 5.00 -2.38 -0.01 2.12 16 33 H 0.26 15.96 8.31 -92.71 -0.77 15.19 16 Total: -1.00 -72.64 258.91 5.85 -66.78 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: 1.08 Total: 14.30 kcal Atomic # 6 Polarization: -48.55 SS G_CDS: 3.25 Total: -45.29 kcal Atomic # 7 Polarization: -62.21 SS G_CDS: 0.30 Total: -61.91 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: -0.80 Total: -22.20 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.33 kcal Total: -72.64 5.85 -66.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703543098.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.365 kcal (2) G-P(sol) polarization free energy of solvation -72.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds