Wall clock time and date at job start Mon Mar 30 2020 01:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42899 * 109.47345 * 2 1 4 4 C 1.50703 * 109.47180 * 239.99377 * 2 1 3 5 5 H 1.08002 * 120.00263 * 245.31190 * 4 2 1 6 6 C 1.37881 * 119.99774 * 65.32258 * 4 2 1 7 7 N 1.31515 * 119.99678 * 7.37968 * 6 4 2 8 8 Si 1.86797 * 120.00129 * 187.39179 * 6 4 2 9 9 H 1.48491 * 109.47331 * 84.98405 * 8 6 4 10 10 H 1.48502 * 109.47015 * 204.98618 * 8 6 4 11 11 H 1.48503 * 109.46930 * 324.98281 * 8 6 4 12 12 C 1.53004 * 109.47012 * 119.99842 * 2 1 3 13 13 C 1.52996 * 109.47102 * 305.00132 * 12 2 1 14 14 C 1.54892 * 110.48543 * 289.77308 * 13 12 2 15 15 C 1.54884 * 102.75006 * 203.37985 * 14 13 12 16 16 C 1.54269 * 104.19630 * 37.94270 * 15 14 13 17 17 C 1.53872 * 106.59878 * 336.38936 * 16 15 14 18 18 H 1.08998 * 109.47130 * 306.48228 * 1 2 3 19 19 H 1.09003 * 109.46893 * 66.47966 * 1 2 3 20 20 H 1.08999 * 109.47304 * 186.47514 * 1 2 3 21 21 H 0.96699 * 114.00067 * 179.97438 * 3 2 1 22 22 H 0.97000 * 119.99811 * 180.02562 * 7 6 4 23 23 H 1.09002 * 109.47028 * 184.99759 * 12 2 1 24 24 H 1.09001 * 109.47412 * 64.99983 * 12 2 1 25 25 H 1.08993 * 110.53915 * 52.38743 * 13 12 2 26 26 H 1.09001 * 110.75625 * 85.06388 * 14 13 12 27 27 H 1.09002 * 110.75550 * 321.69565 * 14 13 12 28 28 H 1.08996 * 110.48762 * 279.26240 * 15 14 13 29 29 H 1.09003 * 110.48962 * 156.62293 * 15 14 13 30 30 H 1.08997 * 110.03001 * 95.67297 * 16 15 14 31 31 H 1.09002 * 110.03291 * 217.10200 * 16 15 14 32 32 H 1.09003 * 110.03480 * 119.28088 * 17 16 15 33 33 H 1.08998 * 110.03451 * 240.66445 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0323 -0.7106 -1.2304 5 1 2.5806 -1.6360 -1.1336 6 6 1.7921 -0.1791 -2.4798 7 7 1.2544 1.0158 -2.5937 8 14 2.2299 -1.1562 -4.0104 9 1 1.1151 -2.0785 -4.3446 10 1 2.4582 -0.2244 -5.1440 11 1 3.4645 -1.9423 -3.7595 12 6 2.0399 -0.7212 1.2493 13 6 1.4298 -0.0762 2.4953 14 6 2.0255 1.3356 2.7217 15 6 1.8030 1.5613 4.2378 16 6 2.0665 0.1784 4.8689 17 6 1.8292 -0.8627 3.7610 18 1 -0.3633 0.6110 0.8263 19 1 -0.3633 0.4101 -0.9423 20 1 -0.3634 -1.0211 0.1159 21 1 2.9703 1.4236 0.0004 22 1 1.0851 1.3895 -3.4727 23 1 3.1263 -0.6444 1.2952 24 1 1.7516 -1.7715 1.2057 25 1 0.3449 -0.0227 2.4059 26 1 1.4861 2.0807 2.1370 27 1 3.0885 1.3495 2.4810 28 1 0.7783 1.8793 4.4298 29 1 2.5100 2.2968 4.6218 30 1 3.0958 0.1194 5.2225 31 1 1.3768 0.0078 5.6956 32 1 2.7434 -1.4270 3.5769 33 1 1.0250 -1.5392 4.0503 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709754107.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:16 Heat of formation + Delta-G solvation = -78.257145 kcal Electronic energy + Delta-G solvation = -13425.680459 eV Core-core repulsion = 11257.218917 eV Total energy + Delta-G solvation = -2168.461542 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.25271 -35.74644 -32.04761 -31.07505 -28.25574 -28.04522 -25.34910 -24.03163 -20.16971 -19.71470 -18.66323 -16.73485 -15.54044 -14.55763 -14.44056 -14.09468 -13.30477 -13.12053 -12.82056 -12.44447 -11.31472 -11.16230 -11.09886 -10.92302 -10.75560 -10.72281 -10.53046 -10.44941 -10.17262 -10.14305 -10.07420 -9.62030 -9.60123 -8.70162 -8.46262 -7.82767 -5.88429 -4.07533 3.31297 3.38302 3.40466 4.44841 5.09006 5.13905 5.17355 5.32865 5.81037 5.86930 5.96272 6.04785 6.10337 6.15358 6.24654 6.30819 6.38579 6.52731 6.63758 6.74723 6.78427 6.93649 6.98254 7.06269 7.16578 7.24591 7.64501 7.87127 8.06734 8.36468 8.91929 9.52239 9.72200 11.10716 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.068255 B = 0.009325 C = 0.008905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 410.126110 B = 3001.890806 C = 3143.670703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.250 3.750 3 O -0.552 6.552 4 C -0.565 4.565 5 H 0.052 0.948 6 C 0.080 3.920 7 N -0.850 5.850 8 Si 0.880 3.120 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.276 1.276 12 C -0.127 4.127 13 C -0.088 4.088 14 C -0.105 4.105 15 C -0.130 4.130 16 C -0.123 4.123 17 C -0.124 4.124 18 H 0.022 0.978 19 H 0.068 0.932 20 H 0.034 0.966 21 H 0.344 0.656 22 H 0.256 0.744 23 H 0.047 0.953 24 H 0.050 0.950 25 H 0.071 0.929 26 H 0.079 0.921 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.988 -0.975 9.857 9.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.211 3.789 3 O -0.354 6.354 4 C -0.603 4.603 5 H 0.070 0.930 6 C -0.126 4.126 7 N -0.486 5.486 8 Si 0.708 3.292 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.201 1.201 12 C -0.165 4.165 13 C -0.106 4.106 14 C -0.143 4.143 15 C -0.168 4.168 16 C -0.160 4.160 17 C -0.162 4.162 18 H 0.041 0.959 19 H 0.087 0.913 20 H 0.054 0.946 21 H 0.187 0.813 22 H 0.066 0.934 23 H 0.065 0.935 24 H 0.069 0.931 25 H 0.089 0.911 26 H 0.097 0.903 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.260 -0.707 9.736 9.765 hybrid contribution 0.834 -0.856 -0.926 1.512 sum 1.094 -1.562 8.810 9.014 Atomic orbital electron populations 1.21562 0.96931 0.98071 1.00910 1.18606 0.90960 0.80087 0.89261 1.86479 1.23225 1.28789 1.96901 1.21653 1.37979 1.09050 0.91580 0.92964 1.25007 0.94544 0.94350 0.98661 1.70140 1.41396 1.14153 1.22883 0.86833 0.78858 0.80212 0.83311 1.20612 1.21325 1.20068 1.22331 0.99079 0.99360 0.95748 1.22031 1.00221 0.94705 0.93680 1.22490 1.00758 0.97595 0.93418 1.22443 1.00608 0.96230 0.97489 1.22118 1.00448 0.95666 0.97798 1.22278 1.00674 0.97657 0.95564 0.95860 0.91331 0.94647 0.81304 0.93368 0.93453 0.93114 0.91093 0.90267 0.92262 0.92337 0.92603 0.92618 0.92836 0.92337 0.92819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.85 8.06 37.15 0.30 -2.55 16 2 C 0.25 6.13 0.68 -91.77 -0.06 6.07 16 3 O -0.55 -13.75 9.38 -35.23 -0.33 -14.08 16 4 C -0.56 -15.41 8.18 -34.44 -0.28 -15.69 16 5 H 0.05 1.42 7.76 -52.49 -0.41 1.02 16 6 C 0.08 2.22 5.14 -17.82 -0.09 2.13 16 7 N -0.85 -24.55 11.23 55.43 0.62 -23.93 16 8 Si 0.88 21.22 29.54 -169.99 -5.02 16.20 16 9 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 C -0.13 -2.63 3.89 -26.73 -0.10 -2.73 16 13 C -0.09 -1.57 2.56 -88.96 -0.23 -1.80 16 14 C -0.11 -1.79 4.92 -24.74 -0.12 -1.91 16 15 C -0.13 -1.85 6.83 -25.07 -0.17 -2.02 16 16 C -0.12 -1.64 6.80 -25.61 -0.17 -1.82 16 17 C -0.12 -1.87 6.37 -25.61 -0.16 -2.04 16 18 H 0.02 0.51 6.58 -51.93 -0.34 0.17 16 19 H 0.07 1.86 6.68 -51.93 -0.35 1.51 16 20 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 21 H 0.34 7.97 9.04 45.56 0.41 8.38 16 22 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 23 H 0.05 0.97 8.02 -51.93 -0.42 0.55 16 24 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.07 1.33 6.15 -51.93 -0.32 1.01 16 26 H 0.08 1.51 7.18 -51.93 -0.37 1.13 16 27 H 0.06 1.01 7.97 -51.93 -0.41 0.60 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.88 7.84 -51.93 -0.41 0.47 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 257.40 15.07 3.88 3.88 Total: -1.00 -28.50 257.40 -6.66 -35.16 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -4.71 Total: 5.13 kcal Atomic # 6 Polarization: -21.26 SS G_CDS: -1.10 Total: -22.36 kcal Atomic # 7 Polarization: -24.55 SS G_CDS: 0.62 Total: -23.93 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: -0.33 Total: -14.08 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -28.50 -6.66 -35.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709754107.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.098 kcal (2) G-P(sol) polarization free energy of solvation -28.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds