Wall clock time and date at job start Mon Mar 30 2020 01:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42899 * 109.47345 * 2 1 4 4 C 1.50703 * 109.47180 * 239.99377 * 2 1 3 5 5 H 1.08002 * 120.00263 * 245.31190 * 4 2 1 6 6 C 1.37881 * 119.99774 * 65.32258 * 4 2 1 7 7 N 1.31515 * 119.99678 * 7.37968 * 6 4 2 8 8 Si 1.86797 * 120.00129 * 187.39179 * 6 4 2 9 9 H 1.48491 * 109.47331 * 84.98405 * 8 6 4 10 10 H 1.48502 * 109.47015 * 204.98618 * 8 6 4 11 11 H 1.48503 * 109.46930 * 324.98281 * 8 6 4 12 12 C 1.53004 * 109.47012 * 119.99842 * 2 1 3 13 13 C 1.52996 * 109.47102 * 305.00132 * 12 2 1 14 14 C 1.54892 * 110.48543 * 289.77308 * 13 12 2 15 15 C 1.54884 * 102.75006 * 203.37985 * 14 13 12 16 16 C 1.54269 * 104.19630 * 37.94270 * 15 14 13 17 17 C 1.53872 * 106.59878 * 336.38936 * 16 15 14 18 18 H 1.08998 * 109.47130 * 306.48228 * 1 2 3 19 19 H 1.09003 * 109.46893 * 66.47966 * 1 2 3 20 20 H 1.08999 * 109.47304 * 186.47514 * 1 2 3 21 21 H 0.96699 * 114.00067 * 179.97438 * 3 2 1 22 22 H 0.97000 * 119.99811 * 180.02562 * 7 6 4 23 23 H 1.09002 * 109.47028 * 184.99759 * 12 2 1 24 24 H 1.09001 * 109.47412 * 64.99983 * 12 2 1 25 25 H 1.08993 * 110.53915 * 52.38743 * 13 12 2 26 26 H 1.09001 * 110.75625 * 85.06388 * 14 13 12 27 27 H 1.09002 * 110.75550 * 321.69565 * 14 13 12 28 28 H 1.08996 * 110.48762 * 279.26240 * 15 14 13 29 29 H 1.09003 * 110.48962 * 156.62293 * 15 14 13 30 30 H 1.08997 * 110.03001 * 95.67297 * 16 15 14 31 31 H 1.09002 * 110.03291 * 217.10200 * 16 15 14 32 32 H 1.09003 * 110.03480 * 119.28088 * 17 16 15 33 33 H 1.08998 * 110.03451 * 240.66445 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0323 -0.7106 -1.2304 5 1 2.5806 -1.6360 -1.1336 6 6 1.7921 -0.1791 -2.4798 7 7 1.2544 1.0158 -2.5937 8 14 2.2299 -1.1562 -4.0104 9 1 1.1151 -2.0785 -4.3446 10 1 2.4582 -0.2244 -5.1440 11 1 3.4645 -1.9423 -3.7595 12 6 2.0399 -0.7212 1.2493 13 6 1.4298 -0.0762 2.4953 14 6 2.0255 1.3356 2.7217 15 6 1.8030 1.5613 4.2378 16 6 2.0665 0.1784 4.8689 17 6 1.8292 -0.8627 3.7610 18 1 -0.3633 0.6110 0.8263 19 1 -0.3633 0.4101 -0.9423 20 1 -0.3634 -1.0211 0.1159 21 1 2.9703 1.4236 0.0004 22 1 1.0851 1.3895 -3.4727 23 1 3.1263 -0.6444 1.2952 24 1 1.7516 -1.7715 1.2057 25 1 0.3449 -0.0227 2.4059 26 1 1.4861 2.0807 2.1370 27 1 3.0885 1.3495 2.4810 28 1 0.7783 1.8793 4.4298 29 1 2.5100 2.2968 4.6218 30 1 3.0958 0.1194 5.2225 31 1 1.3768 0.0078 5.6956 32 1 2.7434 -1.4270 3.5769 33 1 1.0250 -1.5392 4.0503 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709754107.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:16 Heat of formation + Delta-G solvation = -95.496300 kcal Electronic energy + Delta-G solvation = -13426.428005 eV Core-core repulsion = 11257.218917 eV Total energy + Delta-G solvation = -2169.209088 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.74915 -37.44306 -34.14584 -32.79958 -29.83923 -29.35436 -27.37417 -25.70421 -21.69283 -21.03322 -20.28855 -18.75418 -17.00358 -16.55907 -16.05952 -15.55384 -15.02372 -14.85032 -14.09426 -14.05709 -13.24386 -13.01656 -12.92455 -12.70006 -12.52420 -12.26512 -12.10076 -11.99775 -11.83203 -11.57345 -11.30544 -11.23447 -11.05179 -10.63827 -10.55835 -9.77218 -7.99240 -6.25091 1.39693 1.41515 1.49635 2.43024 3.19880 3.85448 3.93684 3.97626 4.21955 4.47717 4.64255 4.71035 4.81833 4.84719 4.89630 4.97284 5.00887 5.10973 5.13595 5.23384 5.30777 5.36654 5.39948 5.54495 5.61866 5.66198 5.71896 5.78945 6.10271 6.29140 6.82133 7.43760 7.73467 8.98329 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.068255 B = 0.009325 C = 0.008905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 410.126110 B = 3001.890806 C = 3143.670703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.240 3.760 3 O -0.561 6.561 4 C -0.581 4.581 5 H 0.047 0.953 6 C 0.034 3.966 7 N -0.880 5.880 8 Si 0.942 3.058 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.270 1.270 12 C -0.116 4.116 13 C -0.088 4.088 14 C -0.104 4.104 15 C -0.125 4.125 16 C -0.118 4.118 17 C -0.121 4.121 18 H 0.035 0.965 19 H 0.035 0.965 20 H 0.045 0.955 21 H 0.348 0.652 22 H 0.255 0.745 23 H 0.046 0.954 24 H 0.047 0.953 25 H 0.060 0.940 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.059 0.941 33 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.416 -1.676 11.108 11.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.201 3.799 3 O -0.364 6.364 4 C -0.619 4.619 5 H 0.065 0.935 6 C -0.169 4.169 7 N -0.517 5.517 8 Si 0.768 3.232 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.195 1.195 12 C -0.154 4.154 13 C -0.106 4.106 14 C -0.142 4.142 15 C -0.163 4.163 16 C -0.155 4.155 17 C -0.158 4.158 18 H 0.054 0.946 19 H 0.054 0.946 20 H 0.064 0.936 21 H 0.192 0.808 22 H 0.064 0.936 23 H 0.065 0.935 24 H 0.066 0.934 25 H 0.078 0.922 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.694 -1.418 10.995 11.108 hybrid contribution 0.698 -0.628 -1.322 1.622 sum 1.392 -2.046 9.673 9.984 Atomic orbital electron populations 1.21471 0.97083 0.98639 0.99554 1.18727 0.90975 0.79998 0.90211 1.86461 1.23665 1.29224 1.97024 1.22032 1.37780 1.09010 0.93044 0.93456 1.25700 0.94594 0.95159 1.01482 1.70267 1.42539 1.15516 1.23347 0.85856 0.78705 0.78847 0.79824 1.20217 1.21127 1.19502 1.22137 0.99028 0.98821 0.95431 1.21969 0.99303 0.95552 0.93799 1.22401 0.99956 0.96354 0.95494 1.22412 1.01362 0.97439 0.95042 1.22102 1.01822 0.94073 0.97513 1.22236 1.01061 0.97994 0.94539 0.94589 0.94597 0.93629 0.80839 0.93552 0.93496 0.93383 0.92176 0.92894 0.92651 0.91962 0.91076 0.91344 0.90959 0.92213 0.91765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.37 8.06 71.98 0.58 -4.79 16 2 C 0.24 11.81 0.68 -11.54 -0.01 11.80 16 3 O -0.56 -28.33 9.38 -148.98 -1.40 -29.72 16 4 C -0.58 -31.78 8.18 25.60 0.21 -31.57 16 5 H 0.05 2.57 7.76 -2.91 -0.02 2.55 16 6 C 0.03 1.87 5.14 84.66 0.44 2.30 16 7 N -0.88 -51.46 11.23 21.45 0.24 -51.22 16 8 Si 0.94 43.65 29.54 68.60 2.03 45.68 16 9 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 10 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 11 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 12 C -0.12 -4.73 3.89 30.59 0.12 -4.61 16 13 C -0.09 -3.02 2.56 -9.72 -0.02 -3.04 16 14 C -0.10 -3.45 4.92 31.88 0.16 -3.29 16 15 C -0.13 -3.22 6.83 31.67 0.22 -3.01 16 16 C -0.12 -2.73 6.80 31.32 0.21 -2.52 16 17 C -0.12 -3.32 6.37 31.32 0.20 -3.12 16 18 H 0.04 1.61 6.58 -2.39 -0.02 1.60 16 19 H 0.03 1.96 6.68 -2.39 -0.02 1.94 16 20 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 21 H 0.35 16.39 9.04 -74.06 -0.67 15.72 16 22 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 23 H 0.05 1.88 8.02 -2.39 -0.02 1.86 16 24 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 25 H 0.06 2.19 6.15 -2.39 -0.01 2.18 16 26 H 0.05 2.01 7.18 -2.39 -0.02 1.99 16 27 H 0.05 1.84 7.97 -2.39 -0.02 1.82 16 28 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.06 1.63 7.84 -2.39 -0.02 1.61 16 33 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -59.78 257.40 3.37 -56.41 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: 0.40 Total: 20.71 kcal Atomic # 6 Polarization: -43.95 SS G_CDS: 2.10 Total: -41.85 kcal Atomic # 7 Polarization: -51.46 SS G_CDS: 0.24 Total: -51.22 kcal Atomic # 8 Polarization: -28.33 SS G_CDS: -1.40 Total: -29.72 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -59.78 3.37 -56.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709754107.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.090 kcal (2) G-P(sol) polarization free energy of solvation -59.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds