Wall clock time and date at job start Mon Mar 30 2020 01:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42901 * 109.46978 * 2 1 4 4 C 1.50701 * 109.47251 * 120.00316 * 2 1 3 5 5 H 1.08006 * 120.00022 * 120.00221 * 4 2 1 6 6 C 1.37875 * 119.99826 * 300.00089 * 4 2 1 7 7 N 1.31516 * 120.00309 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00075 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47114 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47624 * 119.99815 * 8 6 4 11 11 H 1.48500 * 109.47191 * 239.99898 * 8 6 4 12 12 C 1.53000 * 109.47219 * 240.00138 * 2 1 3 13 13 C 1.53002 * 109.47298 * 185.73516 * 12 2 1 14 14 C 1.54265 * 110.02936 * 290.03490 * 13 12 2 15 15 C 1.54967 * 104.15865 * 217.13593 * 14 13 12 16 16 C 1.54887 * 102.77699 * 37.89031 * 15 14 13 17 17 C 1.53872 * 110.03399 * 172.82141 * 13 12 2 18 18 H 1.09000 * 109.46848 * 65.07767 * 1 2 3 19 19 H 1.08993 * 109.46888 * 305.07134 * 1 2 3 20 20 H 1.09000 * 109.46572 * 185.07306 * 1 2 3 21 21 H 0.96703 * 114.00191 * 171.56422 * 3 2 1 22 22 H 0.96993 * 120.00307 * 180.02562 * 7 6 4 23 23 H 1.09002 * 109.47198 * 305.73413 * 12 2 1 24 24 H 1.09008 * 109.47257 * 65.73338 * 12 2 1 25 25 H 1.08997 * 110.01547 * 51.42673 * 13 12 2 26 26 H 1.08999 * 110.48874 * 335.78332 * 14 13 12 27 27 H 1.09001 * 110.48667 * 98.42595 * 14 13 12 28 28 H 1.09003 * 110.71873 * 279.57148 * 15 14 13 29 29 H 1.09003 * 110.92526 * 156.30080 * 15 14 13 30 30 H 1.09003 * 110.48554 * 203.40503 * 16 15 14 31 31 H 1.08994 * 110.59702 * 80.82096 * 16 15 14 32 32 H 1.09003 * 110.03238 * 238.56918 * 17 13 12 33 33 H 1.09001 * 110.03235 * 359.94694 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6534 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3225 -1.1197 4.0079 9 1 3.1475 -2.2864 3.6037 10 1 3.1473 -0.1859 4.8161 11 1 1.1678 -1.5868 4.8164 12 6 2.0400 -0.7212 -1.2493 13 6 3.5632 -0.8473 -1.1793 14 6 4.2168 0.5390 -1.3552 15 6 5.4923 0.2539 -2.1878 16 6 5.0189 -0.8413 -3.1755 17 6 4.0732 -1.7247 -2.3359 18 1 -0.3633 0.4331 -0.9320 19 1 -0.3633 0.5905 0.8410 20 1 -0.3632 -1.0237 0.0909 21 1 2.9613 1.4269 0.1296 22 1 0.7095 1.1616 3.4844 23 1 1.5953 -1.7150 -1.3021 24 1 1.7629 -0.1515 -2.1363 25 1 3.8582 -1.2806 -0.2236 26 1 3.5496 1.2093 -1.8971 27 1 4.4797 0.9625 -0.3859 28 1 6.2932 -0.1208 -1.5503 29 1 5.8138 1.1460 -2.7253 30 1 5.8674 -1.4242 -3.5340 31 1 4.4819 -0.3962 -4.0130 32 1 4.6165 -2.5835 -1.9415 33 1 3.2355 -2.0615 -2.9465 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709754108.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:18 Heat of formation + Delta-G solvation = -75.444111 kcal Electronic energy + Delta-G solvation = -13560.025533 eV Core-core repulsion = 11391.685973 eV Total energy + Delta-G solvation = -2168.339560 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.36436 -35.67252 -32.12462 -30.89746 -28.49109 -28.13639 -25.11247 -23.99114 -20.28839 -19.39080 -18.92992 -17.08497 -15.45037 -14.64477 -14.41144 -13.96671 -13.27594 -13.04819 -12.80552 -11.88403 -11.58819 -11.40260 -11.02296 -10.90973 -10.72383 -10.62173 -10.58355 -10.41566 -10.32019 -10.07348 -9.94604 -9.72721 -9.58028 -8.53819 -8.42095 -7.93774 -5.90942 -4.09785 3.28318 3.37292 3.40278 4.42663 5.08894 5.15460 5.22101 5.31144 5.87123 5.87939 5.98197 6.04908 6.12314 6.17691 6.27578 6.34896 6.43147 6.58809 6.62926 6.74592 6.80809 6.92137 7.02679 7.09688 7.25593 7.27296 7.72697 7.88623 8.13466 8.37650 8.93066 9.51004 9.69862 11.08546 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.039700 B = 0.011897 C = 0.010746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.120886 B = 2352.990599 C = 2604.974389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.246 3.754 3 O -0.571 6.571 4 C -0.555 4.555 5 H 0.058 0.942 6 C 0.077 3.923 7 N -0.859 5.859 8 Si 0.883 3.117 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 C -0.125 4.125 13 C -0.088 4.088 14 C -0.117 4.117 15 C -0.127 4.127 16 C -0.123 4.123 17 C -0.123 4.123 18 H 0.010 0.990 19 H 0.085 0.915 20 H 0.037 0.963 21 H 0.349 0.651 22 H 0.257 0.743 23 H 0.049 0.951 24 H 0.040 0.960 25 H 0.084 0.916 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.053 0.947 33 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.884 -2.427 -7.141 9.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.207 3.793 3 O -0.378 6.378 4 C -0.593 4.593 5 H 0.076 0.924 6 C -0.127 4.127 7 N -0.496 5.496 8 Si 0.710 3.290 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.211 1.211 12 C -0.163 4.163 13 C -0.106 4.106 14 C -0.155 4.155 15 C -0.164 4.164 16 C -0.160 4.160 17 C -0.160 4.160 18 H 0.029 0.971 19 H 0.104 0.896 20 H 0.056 0.944 21 H 0.197 0.803 22 H 0.067 0.933 23 H 0.068 0.932 24 H 0.058 0.942 25 H 0.103 0.897 26 H 0.088 0.912 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.146 -2.187 -7.109 9.045 hybrid contribution 0.865 -0.732 1.025 1.528 sum 6.011 -2.920 -6.084 9.038 Atomic orbital electron populations 1.21604 0.96672 0.99732 1.00028 1.18655 0.91061 0.79771 0.89803 1.86442 1.26229 1.29769 1.95336 1.21719 1.33088 1.13393 0.91091 0.92357 1.25028 0.94390 0.94502 0.98823 1.70034 1.35041 1.21753 1.22735 0.86712 0.78750 0.79862 0.83633 1.19812 1.21051 1.21056 1.22319 0.94177 0.99984 0.99822 1.21795 0.96013 0.94509 0.98292 1.22548 0.95655 0.97830 0.99434 1.22545 0.98269 0.97907 0.97727 1.22328 0.98469 0.97267 0.97962 1.22282 0.98322 0.98080 0.97345 0.97052 0.89638 0.94442 0.80314 0.93292 0.93201 0.94159 0.89740 0.91162 0.91466 0.92099 0.92424 0.92751 0.92226 0.92777 0.92443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.10 8.54 37.16 0.32 -2.78 16 2 C 0.25 6.15 0.74 -91.77 -0.07 6.09 16 3 O -0.57 -14.77 11.60 -35.23 -0.41 -15.18 16 4 C -0.55 -14.82 7.30 -34.44 -0.25 -15.08 16 5 H 0.06 1.54 6.35 -52.48 -0.33 1.21 16 6 C 0.08 2.12 5.24 -17.82 -0.09 2.03 16 7 N -0.86 -24.68 10.93 55.43 0.61 -24.08 16 8 Si 0.88 21.02 29.54 -169.99 -5.02 16.00 16 9 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 C -0.13 -2.64 3.74 -26.73 -0.10 -2.74 16 13 C -0.09 -1.64 2.70 -89.50 -0.24 -1.88 16 14 C -0.12 -2.02 4.44 -25.03 -0.11 -2.13 16 15 C -0.13 -1.81 6.91 -24.70 -0.17 -1.98 16 16 C -0.12 -1.69 6.83 -25.08 -0.17 -1.86 16 17 C -0.12 -1.92 6.46 -25.62 -0.17 -2.09 16 18 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 19 H 0.08 2.38 6.22 -51.93 -0.32 2.06 16 20 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 21 H 0.35 8.31 5.35 45.56 0.24 8.56 16 22 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 23 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 24 H 0.04 0.83 7.95 -51.92 -0.41 0.41 16 25 H 0.08 1.75 6.05 -51.93 -0.31 1.44 16 26 H 0.07 1.26 7.23 -51.93 -0.38 0.89 16 27 H 0.07 1.20 6.66 -51.93 -0.35 0.85 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.88 7.67 -51.93 -0.40 0.48 16 LS Contribution 253.22 15.07 3.82 3.82 Total: -1.00 -28.55 253.22 -6.84 -35.39 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -4.78 Total: 6.47 kcal Atomic # 6 Polarization: -21.36 SS G_CDS: -1.06 Total: -22.42 kcal Atomic # 7 Polarization: -24.68 SS G_CDS: 0.61 Total: -24.08 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: -0.41 Total: -15.18 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -28.55 -6.84 -35.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709754108.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.058 kcal (2) G-P(sol) polarization free energy of solvation -28.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds