Wall clock time and date at job start Mon Mar 30 2020 01:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42901 * 109.46978 * 2 1 4 4 C 1.50701 * 109.47251 * 120.00316 * 2 1 3 5 5 H 1.08006 * 120.00022 * 120.00221 * 4 2 1 6 6 C 1.37875 * 119.99826 * 300.00089 * 4 2 1 7 7 N 1.31516 * 120.00309 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00075 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47114 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47624 * 119.99815 * 8 6 4 11 11 H 1.48500 * 109.47191 * 239.99898 * 8 6 4 12 12 C 1.53000 * 109.47219 * 240.00138 * 2 1 3 13 13 C 1.53002 * 109.47298 * 185.73516 * 12 2 1 14 14 C 1.54265 * 110.02936 * 290.03490 * 13 12 2 15 15 C 1.54967 * 104.15865 * 217.13593 * 14 13 12 16 16 C 1.54887 * 102.77699 * 37.89031 * 15 14 13 17 17 C 1.53872 * 110.03399 * 172.82141 * 13 12 2 18 18 H 1.09000 * 109.46848 * 65.07767 * 1 2 3 19 19 H 1.08993 * 109.46888 * 305.07134 * 1 2 3 20 20 H 1.09000 * 109.46572 * 185.07306 * 1 2 3 21 21 H 0.96703 * 114.00191 * 171.56422 * 3 2 1 22 22 H 0.96993 * 120.00307 * 180.02562 * 7 6 4 23 23 H 1.09002 * 109.47198 * 305.73413 * 12 2 1 24 24 H 1.09008 * 109.47257 * 65.73338 * 12 2 1 25 25 H 1.08997 * 110.01547 * 51.42673 * 13 12 2 26 26 H 1.08999 * 110.48874 * 335.78332 * 14 13 12 27 27 H 1.09001 * 110.48667 * 98.42595 * 14 13 12 28 28 H 1.09003 * 110.71873 * 279.57148 * 15 14 13 29 29 H 1.09003 * 110.92526 * 156.30080 * 15 14 13 30 30 H 1.09003 * 110.48554 * 203.40503 * 16 15 14 31 31 H 1.08994 * 110.59702 * 80.82096 * 16 15 14 32 32 H 1.09003 * 110.03238 * 238.56918 * 17 13 12 33 33 H 1.09001 * 110.03235 * 359.94694 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6534 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3225 -1.1197 4.0079 9 1 3.1475 -2.2864 3.6037 10 1 3.1473 -0.1859 4.8161 11 1 1.1678 -1.5868 4.8164 12 6 2.0400 -0.7212 -1.2493 13 6 3.5632 -0.8473 -1.1793 14 6 4.2168 0.5390 -1.3552 15 6 5.4923 0.2539 -2.1878 16 6 5.0189 -0.8413 -3.1755 17 6 4.0732 -1.7247 -2.3359 18 1 -0.3633 0.4331 -0.9320 19 1 -0.3633 0.5905 0.8410 20 1 -0.3632 -1.0237 0.0909 21 1 2.9613 1.4269 0.1296 22 1 0.7095 1.1616 3.4844 23 1 1.5953 -1.7150 -1.3021 24 1 1.7629 -0.1515 -2.1363 25 1 3.8582 -1.2806 -0.2236 26 1 3.5496 1.2093 -1.8971 27 1 4.4797 0.9625 -0.3859 28 1 6.2932 -0.1208 -1.5503 29 1 5.8138 1.1460 -2.7253 30 1 5.8674 -1.4242 -3.5340 31 1 4.4819 -0.3962 -4.0130 32 1 4.6165 -2.5835 -1.9415 33 1 3.2355 -2.0615 -2.9465 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709754108.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:18 Heat of formation + Delta-G solvation = -92.583628 kcal Electronic energy + Delta-G solvation = -13560.768759 eV Core-core repulsion = 11391.685973 eV Total energy + Delta-G solvation = -2169.082785 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.91184 -37.37692 -34.21268 -32.67438 -30.16622 -29.40697 -27.20836 -25.60254 -21.49297 -21.30938 -20.37960 -19.06862 -16.97420 -16.67913 -15.75867 -15.70646 -14.97896 -14.78774 -14.10038 -13.63036 -13.35866 -13.28905 -12.90426 -12.70633 -12.47755 -12.43207 -11.99530 -11.92768 -11.85235 -11.66506 -11.35232 -11.30213 -11.09823 -10.59434 -10.37280 -9.89584 -7.99434 -6.24247 1.38997 1.42410 1.52174 2.43018 3.20405 3.84665 3.91520 3.96927 4.21847 4.52314 4.66149 4.68685 4.75659 4.90214 4.92661 4.97397 5.03466 5.10532 5.14286 5.20816 5.22832 5.30647 5.45994 5.54726 5.58342 5.65737 5.68583 5.90106 6.10496 6.31473 6.85468 7.44424 7.68886 8.99220 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.039700 B = 0.011897 C = 0.010746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.120886 B = 2352.990599 C = 2604.974389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.234 3.766 3 O -0.585 6.585 4 C -0.560 4.560 5 H 0.057 0.943 6 C 0.029 3.971 7 N -0.892 5.892 8 Si 0.946 3.054 9 H -0.267 1.267 10 H -0.283 1.283 11 H -0.284 1.284 12 C -0.116 4.116 13 C -0.088 4.088 14 C -0.118 4.118 15 C -0.120 4.120 16 C -0.117 4.117 17 C -0.120 4.120 18 H 0.024 0.976 19 H 0.056 0.944 20 H 0.042 0.958 21 H 0.355 0.645 22 H 0.256 0.744 23 H 0.049 0.951 24 H 0.045 0.955 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.053 0.947 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.248 -3.286 -8.039 11.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.195 3.805 3 O -0.393 6.393 4 C -0.598 4.598 5 H 0.076 0.924 6 C -0.173 4.173 7 N -0.529 5.529 8 Si 0.772 3.228 9 H -0.191 1.191 10 H -0.209 1.209 11 H -0.210 1.210 12 C -0.154 4.154 13 C -0.106 4.106 14 C -0.155 4.155 15 C -0.158 4.158 16 C -0.155 4.155 17 C -0.158 4.158 18 H 0.043 0.957 19 H 0.075 0.925 20 H 0.061 0.939 21 H 0.204 0.796 22 H 0.065 0.935 23 H 0.068 0.932 24 H 0.063 0.937 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.520 -3.056 -8.016 10.775 hybrid contribution 0.406 -0.449 1.291 1.426 sum 6.926 -3.506 -6.725 10.271 Atomic orbital electron populations 1.21560 0.97303 0.99558 0.99444 1.18824 0.90844 0.79663 0.91154 1.86405 1.26950 1.30484 1.95471 1.21989 1.32574 1.13236 0.91984 0.92444 1.25743 0.94680 0.95197 1.01674 1.70175 1.36342 1.23214 1.23192 0.85722 0.78130 0.78855 0.80124 1.19099 1.20904 1.20981 1.22162 0.96037 0.99295 0.97903 1.21726 0.94341 0.96009 0.98560 1.22474 0.97108 0.96654 0.99254 1.22520 0.96692 0.99010 0.97558 1.22320 0.98799 0.96807 0.97528 1.22240 0.99009 0.98101 0.96415 0.95653 0.92547 0.93927 0.79635 0.93473 0.93212 0.93675 0.92191 0.92154 0.92853 0.91459 0.90686 0.90421 0.91593 0.91954 0.92125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.14 8.54 71.98 0.61 -5.53 16 2 C 0.23 11.73 0.74 -11.54 -0.01 11.72 16 3 O -0.59 -30.55 11.60 -148.98 -1.73 -32.28 16 4 C -0.56 -29.96 7.30 25.60 0.19 -29.77 16 5 H 0.06 3.03 6.35 -2.91 -0.02 3.01 16 6 C 0.03 1.58 5.24 84.65 0.44 2.03 16 7 N -0.89 -51.92 10.93 21.45 0.23 -51.69 16 8 Si 0.95 43.30 29.54 68.60 2.03 45.32 16 9 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 10 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 11 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 12 C -0.12 -4.82 3.74 30.60 0.11 -4.70 16 13 C -0.09 -3.19 2.70 -10.07 -0.03 -3.21 16 14 C -0.12 -3.91 4.44 31.70 0.14 -3.77 16 15 C -0.12 -3.09 6.91 31.91 0.22 -2.87 16 16 C -0.12 -2.80 6.83 31.67 0.22 -2.59 16 17 C -0.12 -3.45 6.46 31.32 0.20 -3.25 16 18 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 19 H 0.06 3.19 6.22 -2.39 -0.01 3.17 16 20 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 21 H 0.36 17.15 5.35 -74.06 -0.40 16.75 16 22 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 23 H 0.05 2.02 8.14 -2.39 -0.02 2.01 16 24 H 0.04 1.80 7.95 -2.38 -0.02 1.78 16 25 H 0.06 2.46 6.05 -2.39 -0.01 2.45 16 26 H 0.06 2.12 7.23 -2.39 -0.02 2.10 16 27 H 0.05 1.89 6.66 -2.39 -0.02 1.88 16 28 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.06 1.70 7.67 -2.39 -0.02 1.69 16 Total: -1.00 -59.84 253.22 3.32 -56.53 By element: Atomic # 1 Polarization: 23.39 SS G_CDS: 0.68 Total: 24.07 kcal Atomic # 6 Polarization: -44.06 SS G_CDS: 2.10 Total: -41.95 kcal Atomic # 7 Polarization: -51.92 SS G_CDS: 0.23 Total: -51.69 kcal Atomic # 8 Polarization: -30.55 SS G_CDS: -1.73 Total: -32.28 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.32 kcal Total: -59.84 3.32 -56.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709754108.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.058 kcal (2) G-P(sol) polarization free energy of solvation -59.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds