Wall clock time and date at job start Mon Mar 30 2020 02:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47698 * 2 1 4 4 C 1.53093 * 109.48221 * 239.98045 * 2 1 3 5 5 C 1.53187 * 109.16001 * 297.61587 * 4 2 1 6 6 C 1.53178 * 109.03512 * 303.01747 * 5 4 2 7 7 H 1.09004 * 109.51919 * 297.01595 * 6 5 4 8 8 C 1.52997 * 109.52069 * 176.89031 * 6 5 4 9 9 C 1.50701 * 109.47212 * 64.99843 * 8 6 5 10 10 H 1.07998 * 120.00129 * 0.02562 * 9 8 6 11 11 C 1.37880 * 119.99861 * 179.97438 * 9 8 6 12 12 N 1.31510 * 119.99913 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99734 * 180.02562 * 11 9 8 14 14 H 1.48506 * 109.47294 * 60.00559 * 13 11 9 15 15 H 1.48503 * 109.46954 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47431 * 300.00157 * 13 11 9 17 17 C 1.53086 * 109.16166 * 56.98247 * 6 5 4 18 18 H 1.08998 * 109.48509 * 62.37679 * 17 6 5 19 19 C 1.53009 * 109.48053 * 182.40735 * 17 6 5 20 20 O 1.42903 * 109.42163 * 302.38958 * 17 6 5 21 21 H 1.08999 * 109.47295 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47446 * 300.01821 * 1 2 3 23 23 H 1.08997 * 109.47131 * 60.02281 * 1 2 3 24 24 H 1.08994 * 109.52421 * 177.70992 * 4 2 1 25 25 H 1.08997 * 109.52023 * 57.51875 * 4 2 1 26 26 H 1.08999 * 109.53829 * 183.15338 * 5 4 2 27 27 H 1.08995 * 109.54152 * 62.88636 * 5 4 2 28 28 H 1.09002 * 109.47153 * 304.99845 * 8 6 5 29 29 H 1.09001 * 109.46832 * 185.00036 * 8 6 5 30 30 H 0.97002 * 119.99768 * 179.97438 * 12 11 9 31 31 H 1.09001 * 109.46820 * 60.00221 * 19 17 6 32 32 H 1.08992 * 109.46959 * 180.02562 * 19 17 6 33 33 H 1.09002 * 109.46744 * 300.00457 * 19 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0406 -0.7221 -1.2497 5 6 1.5759 -2.1813 -1.2123 6 6 2.0769 -2.8322 0.0806 7 1 3.1669 -2.8407 0.0855 8 6 1.5539 -4.2674 0.1664 9 6 2.1503 -5.0869 -0.9488 10 1 2.8343 -4.6299 -1.6486 11 6 1.8235 -6.4204 -1.0752 12 7 0.9910 -6.9771 -0.2228 13 14 2.5633 -7.4364 -2.4572 14 1 4.0430 -7.4401 -2.3315 15 1 2.0555 -8.8294 -2.3740 16 1 2.1790 -6.8473 -3.7651 17 6 1.5649 -2.0286 1.2788 18 1 0.4754 -2.0553 1.2958 19 6 2.1105 -2.6374 2.5722 20 8 2.0067 -0.6742 1.1663 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5141 0.8898 23 1 -0.3633 0.5135 -0.8902 24 1 3.1297 -0.6871 -1.2711 25 1 1.6419 -0.2355 -2.1398 26 1 1.9828 -2.7155 -2.0709 27 1 0.4869 -2.2180 -1.2409 28 1 0.4678 -4.2645 0.0744 29 1 1.8360 -4.7001 1.1263 30 1 0.7608 -7.9152 -0.3120 31 1 3.2001 -2.6100 2.5553 32 1 1.7456 -2.0654 3.4252 33 1 1.7743 -3.6708 2.6574 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709920906.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:30 Heat of formation + Delta-G solvation = -76.906341 kcal Electronic energy + Delta-G solvation = -13386.908655 eV Core-core repulsion = 11218.505688 eV Total energy + Delta-G solvation = -2168.402967 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.43297 -34.47753 -33.11906 -32.15452 -29.01021 -28.02979 -25.40978 -23.37475 -21.83666 -20.53787 -18.56730 -16.49585 -15.69361 -15.43320 -14.50347 -14.25318 -13.63335 -13.51312 -12.59811 -12.33983 -12.08203 -11.93355 -11.67237 -11.61114 -11.28088 -11.08467 -10.80718 -10.62695 -10.42656 -10.28505 -9.93898 -9.49968 -9.27325 -9.06774 -8.53069 -8.31892 -5.98777 -3.99985 3.33343 3.37922 3.40347 4.24563 4.46924 5.16673 5.27256 5.36272 5.41021 5.46673 5.66470 5.75790 5.84691 5.91240 5.96718 6.06523 6.21114 6.37674 6.39240 6.44814 6.53300 6.65041 6.72888 6.96962 7.08446 7.10100 7.67270 7.78081 7.85403 8.00655 8.45013 9.05621 9.63291 11.12470 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.047838 B = 0.009781 C = 0.008870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.171331 B = 2862.099717 C = 3156.100365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.090 3.910 3 H 0.090 0.910 4 C -0.151 4.151 5 C -0.107 4.107 6 C -0.107 4.107 7 H 0.063 0.937 8 C 0.028 3.972 9 C -0.514 4.514 10 H 0.054 0.946 11 C 0.056 3.944 12 N -0.896 5.896 13 Si 0.889 3.111 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.278 1.278 17 C 0.086 3.914 18 H 0.054 0.946 19 C -0.142 4.142 20 O -0.385 6.385 21 H 0.068 0.932 22 H 0.056 0.944 23 H 0.060 0.940 24 H 0.064 0.936 25 H 0.062 0.938 26 H 0.071 0.929 27 H 0.057 0.943 28 H 0.014 0.986 29 H 0.022 0.978 30 H 0.260 0.740 31 H 0.057 0.943 32 H 0.049 0.951 33 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.110 10.930 0.611 10.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.032 3.968 3 H 0.108 0.892 4 C -0.189 4.189 5 C -0.144 4.144 6 C -0.125 4.125 7 H 0.081 0.919 8 C -0.009 4.009 9 C -0.553 4.553 10 H 0.073 0.927 11 C -0.144 4.144 12 N -0.536 5.536 13 Si 0.717 3.283 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.203 1.203 17 C 0.029 3.971 18 H 0.072 0.928 19 C -0.199 4.199 20 O -0.305 6.305 21 H 0.087 0.913 22 H 0.075 0.925 23 H 0.079 0.921 24 H 0.083 0.917 25 H 0.080 0.920 26 H 0.090 0.910 27 H 0.075 0.925 28 H 0.033 0.967 29 H 0.041 0.959 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.081 10.839 0.794 10.869 hybrid contribution 0.172 -0.789 -1.054 1.328 sum 0.091 10.051 -0.260 10.055 Atomic orbital electron populations 1.22453 0.96997 1.03166 1.01724 1.22028 0.93118 0.95639 0.86029 0.89242 1.22252 1.01284 0.97971 0.97397 1.21583 1.00388 0.92957 0.99519 1.21822 1.00308 0.97865 0.92546 0.91880 1.19161 0.96129 0.88243 0.97380 1.21191 1.26789 0.94524 1.12770 0.92732 1.25007 0.95280 0.97982 0.96179 1.69948 1.34637 1.12502 1.36475 0.86701 0.79547 0.79289 0.82716 1.20295 1.21341 1.20331 1.22241 0.97632 0.80960 0.96272 0.92823 1.21800 1.01589 1.01105 0.95379 1.87883 1.74113 1.25744 1.42721 0.91289 0.92466 0.92070 0.91719 0.91980 0.91003 0.92473 0.96738 0.95950 0.93016 0.92397 0.93222 0.90099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.55 8.65 37.16 0.32 -2.23 16 2 C 0.09 1.35 3.91 -26.68 -0.10 1.25 16 3 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 4 C -0.15 -2.36 5.64 -26.59 -0.15 -2.51 16 5 C -0.11 -2.04 4.76 -26.54 -0.13 -2.16 16 6 C -0.11 -2.24 1.84 -90.49 -0.17 -2.40 16 7 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 8 C 0.03 0.70 4.28 -27.88 -0.12 0.59 16 9 C -0.51 -14.33 8.45 -34.44 -0.29 -14.62 16 10 H 0.05 1.49 7.06 -52.49 -0.37 1.12 16 11 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 12 N -0.90 -26.72 13.29 55.43 0.74 -25.98 16 13 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 14 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 15 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 17 C 0.09 1.60 2.44 -26.68 -0.07 1.54 16 18 H 0.05 1.00 6.34 -51.93 -0.33 0.67 16 19 C -0.14 -2.48 9.28 37.16 0.34 -2.14 16 20 O -0.38 -6.87 10.24 -35.23 -0.36 -7.23 16 21 H 0.07 1.06 4.98 -51.93 -0.26 0.80 16 22 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 25 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.07 1.46 7.06 -51.93 -0.37 1.10 16 27 H 0.06 1.08 6.62 -51.93 -0.34 0.74 16 28 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.02 0.59 6.28 -51.93 -0.33 0.27 16 30 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 31 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.08 1.49 6.40 -51.93 -0.33 1.16 16 LS Contribution 255.40 15.07 3.85 3.85 Total: -1.00 -29.35 255.40 -6.52 -35.87 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: -5.27 Total: -1.96 kcal Atomic # 6 Polarization: -20.73 SS G_CDS: -0.45 Total: -21.18 kcal Atomic # 7 Polarization: -26.72 SS G_CDS: 0.74 Total: -25.98 kcal Atomic # 8 Polarization: -6.87 SS G_CDS: -0.36 Total: -7.23 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -29.35 -6.52 -35.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709920906.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.036 kcal (2) G-P(sol) polarization free energy of solvation -29.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds