Wall clock time and date at job start Mon Mar 30 2020 02:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47698 * 2 1 4 4 C 1.53093 * 109.48221 * 239.98045 * 2 1 3 5 5 C 1.53187 * 109.16001 * 297.61587 * 4 2 1 6 6 C 1.53178 * 109.03512 * 303.01747 * 5 4 2 7 7 H 1.09004 * 109.51919 * 297.01595 * 6 5 4 8 8 C 1.52997 * 109.52069 * 176.89031 * 6 5 4 9 9 C 1.50701 * 109.47212 * 64.99843 * 8 6 5 10 10 H 1.07998 * 120.00129 * 0.02562 * 9 8 6 11 11 C 1.37880 * 119.99861 * 179.97438 * 9 8 6 12 12 N 1.31510 * 119.99913 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99734 * 180.02562 * 11 9 8 14 14 H 1.48506 * 109.47294 * 60.00559 * 13 11 9 15 15 H 1.48503 * 109.46954 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47431 * 300.00157 * 13 11 9 17 17 C 1.53086 * 109.16166 * 56.98247 * 6 5 4 18 18 H 1.08998 * 109.48509 * 62.37679 * 17 6 5 19 19 C 1.53009 * 109.48053 * 182.40735 * 17 6 5 20 20 O 1.42903 * 109.42163 * 302.38958 * 17 6 5 21 21 H 1.08999 * 109.47295 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47446 * 300.01821 * 1 2 3 23 23 H 1.08997 * 109.47131 * 60.02281 * 1 2 3 24 24 H 1.08994 * 109.52421 * 177.70992 * 4 2 1 25 25 H 1.08997 * 109.52023 * 57.51875 * 4 2 1 26 26 H 1.08999 * 109.53829 * 183.15338 * 5 4 2 27 27 H 1.08995 * 109.54152 * 62.88636 * 5 4 2 28 28 H 1.09002 * 109.47153 * 304.99845 * 8 6 5 29 29 H 1.09001 * 109.46832 * 185.00036 * 8 6 5 30 30 H 0.97002 * 119.99768 * 179.97438 * 12 11 9 31 31 H 1.09001 * 109.46820 * 60.00221 * 19 17 6 32 32 H 1.08992 * 109.46959 * 180.02562 * 19 17 6 33 33 H 1.09002 * 109.46744 * 300.00457 * 19 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0406 -0.7221 -1.2497 5 6 1.5759 -2.1813 -1.2123 6 6 2.0769 -2.8322 0.0806 7 1 3.1669 -2.8407 0.0855 8 6 1.5539 -4.2674 0.1664 9 6 2.1503 -5.0869 -0.9488 10 1 2.8343 -4.6299 -1.6486 11 6 1.8235 -6.4204 -1.0752 12 7 0.9910 -6.9771 -0.2228 13 14 2.5633 -7.4364 -2.4572 14 1 4.0430 -7.4401 -2.3315 15 1 2.0555 -8.8294 -2.3740 16 1 2.1790 -6.8473 -3.7651 17 6 1.5649 -2.0286 1.2788 18 1 0.4754 -2.0553 1.2958 19 6 2.1105 -2.6374 2.5722 20 8 2.0067 -0.6742 1.1663 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5141 0.8898 23 1 -0.3633 0.5135 -0.8902 24 1 3.1297 -0.6871 -1.2711 25 1 1.6419 -0.2355 -2.1398 26 1 1.9828 -2.7155 -2.0709 27 1 0.4869 -2.2180 -1.2409 28 1 0.4678 -4.2645 0.0744 29 1 1.8360 -4.7001 1.1263 30 1 0.7608 -7.9152 -0.3120 31 1 3.2001 -2.6100 2.5553 32 1 1.7456 -2.0654 3.4252 33 1 1.7743 -3.6708 2.6574 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709920906.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:29 Heat of formation + Delta-G solvation = -94.279728 kcal Electronic energy + Delta-G solvation = -13387.662021 eV Core-core repulsion = 11218.505688 eV Total energy + Delta-G solvation = -2169.156334 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.85603 -36.25207 -34.46557 -34.15368 -30.41103 -29.72696 -27.04861 -25.09880 -23.39451 -22.13144 -20.07073 -18.54562 -17.08908 -16.88532 -16.41619 -15.75262 -15.17636 -14.97304 -14.28125 -13.89792 -13.81294 -13.38821 -13.14764 -12.96738 -12.83573 -12.78670 -12.55551 -12.39162 -11.93136 -11.85263 -11.61876 -11.32599 -10.98554 -10.79667 -10.50293 -10.07894 -8.17736 -6.26648 1.39059 1.41266 1.49061 2.41090 2.92063 3.15286 3.91776 3.95433 4.03782 4.09173 4.29125 4.42230 4.53931 4.56758 4.68397 4.69569 4.87968 4.96393 5.04381 5.10087 5.17993 5.20710 5.26011 5.34388 5.38915 5.49034 5.59798 5.79858 5.86913 6.27858 6.44138 6.87952 7.41033 8.93619 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.047838 B = 0.009781 C = 0.008870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.171331 B = 2862.099717 C = 3156.100365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.081 3.919 3 H 0.121 0.879 4 C -0.143 4.143 5 C -0.106 4.106 6 C -0.100 4.100 7 H 0.050 0.950 8 C 0.035 3.965 9 C -0.531 4.531 10 H 0.056 0.944 11 C 0.001 3.999 12 N -0.932 5.932 13 Si 0.958 3.042 14 H -0.269 1.269 15 H -0.284 1.284 16 H -0.268 1.268 17 C 0.093 3.907 18 H 0.053 0.947 19 C -0.140 4.140 20 O -0.392 6.392 21 H 0.046 0.954 22 H 0.066 0.934 23 H 0.084 0.916 24 H 0.063 0.937 25 H 0.090 0.910 26 H 0.052 0.948 27 H 0.053 0.947 28 H -0.011 1.011 29 H 0.002 0.998 30 H 0.262 0.738 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.287 12.392 -0.240 12.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.024 3.976 3 H 0.138 0.862 4 C -0.181 4.181 5 C -0.143 4.143 6 C -0.119 4.119 7 H 0.068 0.932 8 C -0.002 4.002 9 C -0.569 4.569 10 H 0.075 0.925 11 C -0.197 4.197 12 N -0.573 5.573 13 Si 0.783 3.217 14 H -0.194 1.194 15 H -0.209 1.209 16 H -0.193 1.193 17 C 0.036 3.964 18 H 0.070 0.930 19 C -0.197 4.197 20 O -0.311 6.311 21 H 0.065 0.935 22 H 0.085 0.915 23 H 0.103 0.897 24 H 0.082 0.918 25 H 0.108 0.892 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.007 0.993 29 H 0.020 0.980 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.322 12.320 -0.061 12.325 hybrid contribution 0.030 -1.211 -0.781 1.441 sum 0.352 11.109 -0.841 11.147 Atomic orbital electron populations 1.22420 0.95934 1.02192 1.03437 1.22360 0.94114 0.96564 0.84555 0.86159 1.22210 1.01316 0.95397 0.99182 1.21516 1.00062 0.95322 0.97427 1.21669 0.99263 0.95796 0.95179 0.93167 1.19016 0.94401 0.91014 0.95735 1.21574 1.26782 0.95203 1.13336 0.92539 1.25898 0.95694 0.99333 0.98758 1.70079 1.35965 1.12897 1.38312 0.85608 0.78921 0.77528 0.79645 1.19437 1.20895 1.19313 1.22040 0.97446 0.81500 0.95429 0.92950 1.21759 1.01574 1.00426 0.95930 1.87875 1.74438 1.24713 1.44123 0.93537 0.91482 0.89724 0.91804 0.89164 0.92911 0.92805 0.99267 0.98005 0.92902 0.92387 0.90870 0.91816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.51 8.65 71.98 0.62 -3.88 16 2 C 0.08 2.20 3.91 30.62 0.12 2.32 16 3 H 0.12 2.61 8.14 -2.39 -0.02 2.59 16 4 C -0.14 -4.14 5.64 30.69 0.17 -3.96 16 5 C -0.11 -3.99 4.76 30.72 0.15 -3.84 16 6 C -0.10 -4.26 1.84 -10.71 -0.02 -4.28 16 7 H 0.05 2.24 8.14 -2.38 -0.02 2.22 16 8 C 0.04 1.86 4.28 29.85 0.13 1.99 16 9 C -0.53 -30.15 8.45 25.60 0.22 -29.93 16 10 H 0.06 3.11 7.06 -2.91 -0.02 3.09 16 11 C 0.00 0.04 5.46 84.66 0.46 0.50 16 12 N -0.93 -56.69 13.29 21.45 0.28 -56.41 16 13 Si 0.96 44.56 29.54 68.60 2.03 46.59 16 14 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 15 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 16 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 17 C 0.09 3.44 2.44 30.63 0.07 3.52 16 18 H 0.05 1.96 6.34 -2.39 -0.02 1.94 16 19 C -0.14 -4.88 9.28 71.99 0.67 -4.21 16 20 O -0.39 -13.20 10.24 -148.98 -1.53 -14.72 16 21 H 0.05 1.36 4.98 -2.39 -0.01 1.35 16 22 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 23 H 0.08 1.68 8.14 -2.39 -0.02 1.67 16 24 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 26 H 0.05 2.15 7.06 -2.39 -0.02 2.14 16 27 H 0.05 2.04 6.62 -2.39 -0.02 2.02 16 28 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 29 H 0.00 0.10 6.28 -2.39 -0.01 0.08 16 30 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 31 H 0.06 1.98 8.14 -2.39 -0.02 1.97 16 32 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.06 2.42 6.40 -2.39 -0.02 2.40 16 Total: -1.00 -62.94 255.40 4.44 -58.50 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: 1.06 Total: 7.81 kcal Atomic # 6 Polarization: -44.36 SS G_CDS: 2.59 Total: -41.77 kcal Atomic # 7 Polarization: -56.69 SS G_CDS: 0.28 Total: -56.41 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: -1.53 Total: -14.72 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -62.94 4.44 -58.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709920906.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.779 kcal (2) G-P(sol) polarization free energy of solvation -62.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds