Wall clock time and date at job start Mon Mar 30 2020 01:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 110.67490 * 2 1 4 4 C 1.54991 * 110.61620 * 237.03471 * 2 1 3 5 5 C 1.54816 * 102.09409 * 278.52318 * 4 2 1 6 6 H 1.08999 * 110.49071 * 97.79613 * 5 4 2 7 7 C 1.50699 * 110.60145 * 220.39046 * 5 4 2 8 8 H 1.07998 * 120.00328 * 116.67431 * 7 5 4 9 9 C 1.37885 * 119.99676 * 296.67404 * 7 5 4 10 10 N 1.31509 * 119.99664 * 180.02562 * 9 7 5 11 11 Si 1.86791 * 119.99926 * 0.02562 * 9 7 5 12 12 H 1.48494 * 109.47273 * 90.00249 * 11 9 7 13 13 H 1.48507 * 109.46934 * 210.00147 * 11 9 7 14 14 H 1.48498 * 109.47447 * 329.99902 * 11 9 7 15 15 C 1.54100 * 104.18422 * 339.11961 * 5 4 2 16 16 C 1.52999 * 109.87798 * 117.39552 * 15 5 4 17 17 C 1.53006 * 109.87802 * 238.39847 * 15 5 4 18 18 O 1.43747 * 107.29752 * 357.96842 * 15 5 4 19 19 H 1.09006 * 109.46881 * 287.10028 * 1 2 3 20 20 H 1.08991 * 109.47460 * 47.10413 * 1 2 3 21 21 H 1.09000 * 109.47202 * 167.10797 * 1 2 3 22 22 H 1.09003 * 109.47080 * 181.51340 * 3 2 1 23 23 H 1.09005 * 109.47132 * 301.50981 * 3 2 1 24 24 H 1.08996 * 109.47525 * 61.51086 * 3 2 1 25 25 H 1.09000 * 110.90891 * 160.32394 * 4 2 1 26 26 H 1.09001 * 110.91146 * 36.71728 * 4 2 1 27 27 H 0.97002 * 120.00046 * 179.97438 * 10 9 7 28 28 H 1.09000 * 109.47234 * 53.42118 * 16 15 5 29 29 H 1.09002 * 109.47170 * 173.41549 * 16 15 5 30 30 H 1.08996 * 109.47232 * 293.41926 * 16 15 5 31 31 H 1.08998 * 109.47219 * 59.99725 * 17 15 5 32 32 H 1.09002 * 109.47145 * 180.02562 * 17 15 5 33 33 H 1.09004 * 109.46705 * 299.99877 * 17 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0702 1.4315 0.0000 4 6 2.0758 -0.7893 -1.2171 5 6 1.9800 -2.2536 -0.7235 6 1 1.0717 -2.7244 -1.0996 7 6 3.1944 -3.0374 -1.1499 8 1 3.8616 -3.4467 -0.4058 9 6 3.4536 -3.2321 -2.4901 10 7 4.5131 -3.9165 -2.8622 11 14 2.2999 -2.5236 -3.7770 12 1 2.7474 -1.1560 -4.1438 13 1 2.3131 -3.3891 -4.9837 14 1 0.9220 -2.4627 -3.2267 15 6 1.9283 -2.1319 0.8118 16 6 0.5995 -2.6827 1.3330 17 6 3.0921 -2.9058 1.4345 18 8 2.0385 -0.7353 1.1338 19 1 -0.3633 0.3022 0.9823 20 1 -0.3634 0.6994 -0.7528 21 1 -0.3633 -1.0018 -0.2293 22 1 3.1597 1.4087 -0.0271 23 1 1.6960 1.9610 -0.8762 24 1 1.7399 1.9445 0.9032 25 1 3.1101 -0.5161 -1.4259 26 1 1.4488 -0.6331 -2.0950 27 1 4.6953 -4.0538 -3.8050 28 1 0.4518 -3.6940 0.9541 29 1 0.6164 -2.7019 2.4227 30 1 -0.2165 -2.0448 0.9934 31 1 4.0354 -2.4967 1.0728 32 1 3.0490 -2.8157 2.5199 33 1 3.0207 -3.9568 1.1544 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711261591.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:42 Heat of formation + Delta-G solvation = -69.375920 kcal Electronic energy + Delta-G solvation = -13910.459256 eV Core-core repulsion = 11742.382833 eV Total energy + Delta-G solvation = -2168.076423 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.19004 -35.60550 -34.64904 -33.14538 -30.83053 -28.98745 -27.55090 -26.66037 -23.58481 -21.38511 -20.23582 -18.63318 -16.87715 -16.36735 -16.07600 -15.66143 -15.40239 -14.74765 -13.99782 -13.91270 -13.69854 -13.39674 -13.04434 -12.98420 -12.87459 -12.74355 -12.61980 -12.32548 -12.14713 -11.87157 -11.48282 -11.28216 -10.99868 -10.77449 -10.67107 -10.36121 -8.24057 -6.26871 1.31450 1.34011 1.42992 2.35562 2.98989 3.08683 3.94998 4.01228 4.09291 4.20915 4.27143 4.37583 4.58778 4.67721 4.74944 4.82621 4.87518 4.93239 4.96858 4.99235 5.06136 5.19056 5.22853 5.31923 5.41902 5.44230 5.53479 5.55671 5.74364 6.34924 6.38314 6.80672 7.37582 8.90525 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.033788 B = 0.016442 C = 0.013568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.502020 B = 1702.518846 C = 2063.108494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.090 3.910 3 C -0.133 4.133 4 C -0.151 4.151 5 C -0.009 4.009 6 H 0.037 0.963 7 C -0.517 4.517 8 H 0.066 0.934 9 C 0.014 3.986 10 N -0.950 5.950 11 Si 0.929 3.071 12 H -0.268 1.268 13 H -0.296 1.296 14 H -0.244 1.244 15 C 0.106 3.894 16 C -0.162 4.162 17 C -0.115 4.115 18 O -0.380 6.380 19 H 0.074 0.926 20 H 0.080 0.920 21 H 0.059 0.941 22 H 0.048 0.952 23 H 0.084 0.916 24 H 0.073 0.927 25 H 0.052 0.948 26 H 0.062 0.938 27 H 0.263 0.737 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.038 0.962 32 H 0.054 0.946 33 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.683 8.124 4.971 13.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.051 3.949 3 C -0.190 4.190 4 C -0.189 4.189 5 C -0.028 4.028 6 H 0.055 0.945 7 C -0.554 4.554 8 H 0.084 0.916 9 C -0.182 4.182 10 N -0.591 5.591 11 Si 0.754 3.246 12 H -0.193 1.193 13 H -0.223 1.223 14 H -0.168 1.168 15 C 0.067 3.933 16 C -0.220 4.220 17 C -0.172 4.172 18 O -0.301 6.301 19 H 0.093 0.907 20 H 0.099 0.901 21 H 0.078 0.922 22 H 0.067 0.933 23 H 0.103 0.897 24 H 0.092 0.908 25 H 0.071 0.929 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.512 8.147 5.030 13.497 hybrid contribution 0.163 -0.279 -1.172 1.216 sum -9.350 7.868 3.858 12.814 Atomic orbital electron populations 1.22380 0.93573 1.02751 1.03336 1.22620 0.94394 0.93045 0.84811 1.21739 1.00970 0.92976 1.03313 1.23507 1.00132 0.97364 0.97887 1.20474 0.96465 0.92904 0.92984 0.94466 1.21727 1.08743 1.32172 0.92781 0.91601 1.25794 0.96342 0.95303 1.00774 1.70034 1.29125 1.43140 1.16828 0.86085 0.81390 0.78526 0.78558 1.19335 1.22325 1.16789 1.21975 0.95402 0.81496 0.94474 1.22454 0.96562 1.01373 1.01564 1.21715 0.97468 0.99428 0.98604 1.88777 1.84507 1.17214 1.39609 0.90735 0.90145 0.92209 0.93296 0.89696 0.90794 0.92932 0.91929 0.92817 0.92040 0.91619 0.90608 0.94272 0.92660 0.92162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.52 7.75 71.98 0.56 -3.96 16 2 C 0.09 3.10 1.25 -10.11 -0.01 3.09 16 3 C -0.13 -3.79 8.99 71.98 0.65 -3.14 16 4 C -0.15 -6.29 3.82 31.90 0.12 -6.17 16 5 C -0.01 -0.43 1.60 -10.55 -0.02 -0.44 16 6 H 0.04 1.70 6.74 -2.39 -0.02 1.69 16 7 C -0.52 -28.79 8.13 25.60 0.21 -28.58 16 8 H 0.07 3.96 4.97 -2.91 -0.01 3.95 16 9 C 0.01 0.83 5.46 84.66 0.46 1.30 16 10 N -0.95 -59.24 13.96 21.45 0.30 -58.95 16 11 Si 0.93 44.05 24.86 68.60 1.71 45.75 16 12 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 13 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 14 H -0.24 -10.62 6.41 99.48 0.64 -9.98 16 15 C 0.11 4.27 1.14 -10.42 -0.01 4.26 16 16 C -0.16 -5.36 8.40 71.98 0.60 -4.75 16 17 C -0.12 -4.81 7.37 71.98 0.53 -4.28 16 18 O -0.38 -15.01 10.36 -148.98 -1.54 -16.55 16 19 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 20 H 0.08 1.85 8.11 -2.39 -0.02 1.83 16 21 H 0.06 1.74 5.40 -2.39 -0.01 1.73 16 22 H 0.05 1.51 8.13 -2.39 -0.02 1.49 16 23 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 24 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 25 H 0.05 2.43 7.78 -2.39 -0.02 2.41 16 26 H 0.06 2.45 6.14 -2.39 -0.01 2.44 16 27 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 28 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.08 2.26 4.78 -2.39 -0.01 2.25 16 31 H 0.04 1.82 6.99 -2.39 -0.02 1.81 16 32 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.06 2.59 7.26 -2.39 -0.02 2.58 16 Total: -1.00 -63.52 247.16 4.56 -58.97 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: 1.00 Total: 13.46 kcal Atomic # 6 Polarization: -45.77 SS G_CDS: 3.09 Total: -42.68 kcal Atomic # 7 Polarization: -59.24 SS G_CDS: 0.30 Total: -58.95 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: -1.54 Total: -16.55 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 1.71 Total: 45.75 kcal Total: -63.52 4.56 -58.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711261591.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.407 kcal (2) G-P(sol) polarization free energy of solvation -63.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds