Wall clock time and date at job start Mon Mar 30 2020 01:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.82244 * 2 1 4 4 C 1.54382 * 109.83092 * 120.88200 * 2 1 3 5 5 C 1.55307 * 102.25087 * 98.15627 * 4 2 1 6 6 H 1.08996 * 111.12876 * 276.21860 * 5 4 2 7 7 C 1.50706 * 111.12356 * 152.05124 * 5 4 2 8 8 H 1.08002 * 120.00311 * 241.45420 * 7 5 4 9 9 C 1.37874 * 119.99779 * 61.45766 * 7 5 4 10 10 N 1.31516 * 119.99989 * 359.97438 * 9 7 5 11 11 Si 1.86797 * 120.00100 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47081 * 59.99954 * 11 9 7 13 13 H 1.48497 * 109.47233 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47050 * 299.99838 * 11 9 7 15 15 C 1.54947 * 100.94091 * 34.13633 * 5 4 2 16 16 C 1.53005 * 110.31020 * 82.46687 * 15 5 4 17 17 C 1.53002 * 110.31059 * 204.63808 * 15 5 4 18 18 O 1.43237 * 109.83429 * 239.01997 * 2 1 3 19 19 H 1.08999 * 109.47061 * 299.11756 * 1 2 3 20 20 H 1.09000 * 109.46908 * 59.11972 * 1 2 3 21 21 H 1.08998 * 109.46739 * 179.11513 * 1 2 3 22 22 H 1.09003 * 109.47108 * 180.88254 * 3 2 1 23 23 H 1.09000 * 109.47426 * 300.88284 * 3 2 1 24 24 H 1.08996 * 109.47375 * 60.88502 * 3 2 1 25 25 H 1.09000 * 110.84821 * 339.96943 * 4 2 1 26 26 H 1.08992 * 111.02755 * 216.42818 * 4 2 1 27 27 H 0.97008 * 120.00055 * 179.97438 * 10 9 7 28 28 H 1.09002 * 109.46878 * 59.99904 * 16 15 5 29 29 H 1.08996 * 109.47283 * 179.97438 * 16 15 5 30 30 H 1.08999 * 109.47209 * 300.00580 * 16 15 5 31 31 H 1.08993 * 109.47158 * 59.99918 * 17 15 5 32 32 H 1.09001 * 109.47265 * 180.02562 * 17 15 5 33 33 H 1.09002 * 109.47064 * 299.99961 * 17 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0488 1.4394 0.0000 4 6 2.0537 -0.7454 1.2464 5 6 2.3681 -2.1564 0.6786 6 1 1.4731 -2.7779 0.6530 7 6 3.4681 -2.8246 1.4627 8 1 4.3923 -3.0951 0.9737 9 6 3.2945 -3.0908 2.8043 10 7 2.1693 -2.7611 3.3999 11 14 4.6576 -3.9197 3.7760 12 1 5.8794 -3.0768 3.7326 13 1 4.2252 -4.0933 5.1860 14 1 4.9515 -5.2485 3.1818 15 6 2.8408 -1.7987 -0.7530 16 6 4.3136 -1.3843 -0.7380 17 6 2.6319 -2.9872 -1.6937 18 8 2.0160 -0.6936 -1.1552 19 1 -0.3633 0.5001 0.8978 20 1 -0.3633 0.5274 -0.8820 21 1 -0.3633 -1.0275 -0.0159 22 1 3.1387 1.4327 -0.0158 23 1 1.6758 1.9601 -0.8819 24 1 1.7017 1.9507 0.8978 25 1 1.2851 -0.7999 2.0173 26 1 2.9564 -0.2732 1.6339 27 1 2.0470 -2.9487 4.3438 28 1 4.9188 -2.2077 -0.3587 29 1 4.6316 -1.1364 -1.7506 30 1 4.4396 -0.5141 -0.0938 31 1 1.5735 -3.2459 -1.7227 32 1 2.9690 -2.7212 -2.6956 33 1 3.2050 -3.8413 -1.3328 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711261593.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:44 Heat of formation + Delta-G solvation = -67.324223 kcal Electronic energy + Delta-G solvation = -13796.247513 eV Core-core repulsion = 11628.260058 eV Total energy + Delta-G solvation = -2167.987455 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.20167 -33.84568 -32.92321 -30.95104 -28.32290 -26.99010 -26.17148 -25.01987 -21.77208 -19.68867 -18.36308 -16.15562 -14.93348 -14.65285 -14.29199 -13.75014 -13.11075 -12.89192 -12.49033 -12.23826 -11.87856 -11.59560 -11.53093 -11.23339 -11.09396 -11.00017 -10.93751 -10.66380 -10.49117 -10.15416 -9.75058 -9.52816 -9.00926 -8.84754 -8.47494 -8.38108 -6.04542 -4.07036 3.29813 3.34925 3.37085 4.40469 4.68442 5.28788 5.63004 5.71362 5.86933 5.94457 5.99638 6.11844 6.16681 6.31809 6.34735 6.44987 6.49853 6.56878 6.64254 6.69393 6.75932 6.78784 7.10845 7.11823 7.20462 7.24446 7.60214 7.80001 7.95748 8.13420 8.43367 8.93058 9.56814 11.05446 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.038212 B = 0.013517 C = 0.011802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.586532 B = 2071.007223 C = 2371.914298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.090 3.910 3 C -0.147 4.147 4 C -0.116 4.116 5 C 0.040 3.960 6 H 0.036 0.964 7 C -0.512 4.512 8 H 0.064 0.936 9 C 0.064 3.936 10 N -0.889 5.889 11 Si 0.890 3.110 12 H -0.277 1.277 13 H -0.288 1.288 14 H -0.277 1.277 15 C 0.095 3.905 16 C -0.141 4.141 17 C -0.130 4.130 18 O -0.383 6.383 19 H 0.057 0.943 20 H 0.046 0.954 21 H 0.057 0.943 22 H 0.054 0.946 23 H 0.047 0.953 24 H 0.057 0.943 25 H 0.075 0.925 26 H 0.057 0.943 27 H 0.260 0.740 28 H 0.071 0.929 29 H 0.032 0.968 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.042 0.958 33 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.131 3.691 -4.945 6.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.051 3.949 3 C -0.204 4.204 4 C -0.154 4.154 5 C 0.021 3.979 6 H 0.054 0.946 7 C -0.550 4.550 8 H 0.082 0.918 9 C -0.138 4.138 10 N -0.527 5.527 11 Si 0.717 3.283 12 H -0.203 1.203 13 H -0.214 1.214 14 H -0.203 1.203 15 C 0.057 3.943 16 C -0.198 4.198 17 C -0.187 4.187 18 O -0.303 6.303 19 H 0.076 0.924 20 H 0.065 0.935 21 H 0.076 0.924 22 H 0.073 0.927 23 H 0.066 0.934 24 H 0.076 0.924 25 H 0.094 0.906 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.090 0.910 29 H 0.051 0.949 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.271 3.742 -4.970 6.227 hybrid contribution 0.721 -0.425 0.900 1.229 sum 0.451 3.317 -4.070 5.270 Atomic orbital electron populations 1.21985 0.95540 1.01967 1.00559 1.22133 0.93004 0.91801 0.88010 1.22066 1.01209 0.96409 1.00723 1.23042 1.00498 0.96995 0.94867 1.20212 0.96632 0.92713 0.88313 0.94637 1.21073 1.00996 1.38915 0.93989 0.91789 1.24972 0.95482 0.95546 0.97835 1.69960 1.24427 1.47222 1.11077 0.86697 0.82404 0.80092 0.79059 1.20274 1.21377 1.20264 1.22429 0.89994 0.85347 0.96577 1.22060 0.96631 1.02028 0.99107 1.21721 1.01488 0.97533 0.97963 1.88280 1.67083 1.44314 1.30667 0.92397 0.93476 0.92380 0.92677 0.93356 0.92432 0.90606 0.92431 0.92999 0.91020 0.94890 0.92978 0.93040 0.93923 0.91409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 8.73 37.16 0.32 -2.28 16 2 C 0.09 1.82 1.26 -89.89 -0.11 1.71 16 3 C -0.15 -2.57 8.75 37.16 0.33 -2.24 16 4 C -0.12 -2.70 4.37 -24.78 -0.11 -2.81 16 5 C 0.04 0.98 2.30 -89.52 -0.21 0.78 16 6 H 0.04 0.96 8.06 -51.93 -0.42 0.54 16 7 C -0.51 -13.50 7.87 -34.44 -0.27 -13.77 16 8 H 0.06 1.64 5.68 -52.49 -0.30 1.35 16 9 C 0.06 1.72 5.34 -17.82 -0.10 1.62 16 10 N -0.89 -24.96 12.19 55.43 0.68 -24.28 16 11 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 12 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 13 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 14 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 15 C 0.09 2.06 1.04 -89.59 -0.09 1.97 16 16 C -0.14 -2.88 8.22 37.16 0.31 -2.57 16 17 C -0.13 -2.52 8.95 37.16 0.33 -2.19 16 18 O -0.38 -8.29 10.05 -35.23 -0.35 -8.64 16 19 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 20 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 21 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 22 H 0.05 0.97 7.93 -51.93 -0.41 0.56 16 23 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 25 H 0.08 1.88 7.32 -51.93 -0.38 1.50 16 26 H 0.06 1.39 7.43 -51.93 -0.39 1.01 16 27 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 28 H 0.07 1.47 5.97 -51.93 -0.31 1.16 16 29 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 1.08 7.32 -51.93 -0.38 0.70 16 31 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 261.21 15.07 3.94 3.94 Total: -1.00 -27.59 261.21 -5.89 -33.48 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -5.52 Total: -0.56 kcal Atomic # 6 Polarization: -20.19 SS G_CDS: 0.40 Total: -19.79 kcal Atomic # 7 Polarization: -24.96 SS G_CDS: 0.68 Total: -24.28 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: -0.35 Total: -8.64 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -27.59 -5.89 -33.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711261593.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.846 kcal (2) G-P(sol) polarization free energy of solvation -27.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds