Wall clock time and date at job start Mon Mar 30 2020 01:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.82244 * 2 1 4 4 C 1.54382 * 109.83092 * 120.88200 * 2 1 3 5 5 C 1.55307 * 102.25087 * 98.15627 * 4 2 1 6 6 H 1.08996 * 111.12876 * 276.21860 * 5 4 2 7 7 C 1.50706 * 111.12356 * 152.05124 * 5 4 2 8 8 H 1.08002 * 120.00311 * 241.45420 * 7 5 4 9 9 C 1.37874 * 119.99779 * 61.45766 * 7 5 4 10 10 N 1.31516 * 119.99989 * 359.97438 * 9 7 5 11 11 Si 1.86797 * 120.00100 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47081 * 59.99954 * 11 9 7 13 13 H 1.48497 * 109.47233 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47050 * 299.99838 * 11 9 7 15 15 C 1.54947 * 100.94091 * 34.13633 * 5 4 2 16 16 C 1.53005 * 110.31020 * 82.46687 * 15 5 4 17 17 C 1.53002 * 110.31059 * 204.63808 * 15 5 4 18 18 O 1.43237 * 109.83429 * 239.01997 * 2 1 3 19 19 H 1.08999 * 109.47061 * 299.11756 * 1 2 3 20 20 H 1.09000 * 109.46908 * 59.11972 * 1 2 3 21 21 H 1.08998 * 109.46739 * 179.11513 * 1 2 3 22 22 H 1.09003 * 109.47108 * 180.88254 * 3 2 1 23 23 H 1.09000 * 109.47426 * 300.88284 * 3 2 1 24 24 H 1.08996 * 109.47375 * 60.88502 * 3 2 1 25 25 H 1.09000 * 110.84821 * 339.96943 * 4 2 1 26 26 H 1.08992 * 111.02755 * 216.42818 * 4 2 1 27 27 H 0.97008 * 120.00055 * 179.97438 * 10 9 7 28 28 H 1.09002 * 109.46878 * 59.99904 * 16 15 5 29 29 H 1.08996 * 109.47283 * 179.97438 * 16 15 5 30 30 H 1.08999 * 109.47209 * 300.00580 * 16 15 5 31 31 H 1.08993 * 109.47158 * 59.99918 * 17 15 5 32 32 H 1.09001 * 109.47265 * 180.02562 * 17 15 5 33 33 H 1.09002 * 109.47064 * 299.99961 * 17 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0488 1.4394 0.0000 4 6 2.0537 -0.7454 1.2464 5 6 2.3681 -2.1564 0.6786 6 1 1.4731 -2.7779 0.6530 7 6 3.4681 -2.8246 1.4627 8 1 4.3923 -3.0951 0.9737 9 6 3.2945 -3.0908 2.8043 10 7 2.1693 -2.7611 3.3999 11 14 4.6576 -3.9197 3.7760 12 1 5.8794 -3.0768 3.7326 13 1 4.2252 -4.0933 5.1860 14 1 4.9515 -5.2485 3.1818 15 6 2.8408 -1.7987 -0.7530 16 6 4.3136 -1.3843 -0.7380 17 6 2.6319 -2.9872 -1.6937 18 8 2.0160 -0.6936 -1.1552 19 1 -0.3633 0.5001 0.8978 20 1 -0.3633 0.5274 -0.8820 21 1 -0.3633 -1.0275 -0.0159 22 1 3.1387 1.4327 -0.0158 23 1 1.6758 1.9601 -0.8819 24 1 1.7017 1.9507 0.8978 25 1 1.2851 -0.7999 2.0173 26 1 2.9564 -0.2732 1.6339 27 1 2.0470 -2.9487 4.3438 28 1 4.9188 -2.2077 -0.3587 29 1 4.6316 -1.1364 -1.7506 30 1 4.4396 -0.5141 -0.0938 31 1 1.5735 -3.2459 -1.7227 32 1 2.9690 -2.7212 -2.6956 33 1 3.2050 -3.8413 -1.3328 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711261593.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:43 Heat of formation + Delta-G solvation = -82.783653 kcal Electronic energy + Delta-G solvation = -13796.917885 eV Core-core repulsion = 11628.260058 eV Total energy + Delta-G solvation = -2168.657826 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.91875 -35.60143 -34.74961 -32.77760 -30.06168 -28.50668 -27.71581 -27.01132 -23.57815 -21.42481 -20.10310 -18.16888 -16.69744 -16.48748 -16.01780 -15.43835 -14.78473 -14.45942 -14.16110 -14.01829 -13.48297 -13.24188 -13.12509 -12.88714 -12.73727 -12.66251 -12.62397 -12.44272 -12.17113 -12.04105 -11.50802 -11.32279 -10.83274 -10.73378 -10.41998 -10.17140 -8.11072 -6.19292 1.43702 1.43990 1.51164 2.44045 3.03118 3.21849 4.04094 4.15735 4.22908 4.35089 4.36782 4.48198 4.73328 4.79792 4.82442 4.90550 4.91694 5.00830 5.05976 5.09178 5.12168 5.23377 5.40501 5.46298 5.49523 5.50689 5.67243 5.83207 5.92324 6.26871 6.57329 6.87444 7.47515 8.98491 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.038212 B = 0.013517 C = 0.011802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.586532 B = 2071.007223 C = 2371.914298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.086 3.914 3 C -0.141 4.141 4 C -0.106 4.106 5 C 0.032 3.968 6 H 0.001 0.999 7 C -0.521 4.521 8 H 0.069 0.931 9 C 0.013 3.987 10 N -0.920 5.920 11 Si 0.951 3.049 12 H -0.270 1.270 13 H -0.289 1.289 14 H -0.271 1.271 15 C 0.094 3.906 16 C -0.135 4.135 17 C -0.127 4.127 18 O -0.388 6.388 19 H 0.070 0.930 20 H 0.069 0.931 21 H 0.039 0.961 22 H 0.049 0.951 23 H 0.068 0.932 24 H 0.071 0.929 25 H 0.051 0.949 26 H 0.042 0.958 27 H 0.259 0.741 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.041 0.959 31 H 0.046 0.954 32 H 0.066 0.934 33 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.630 4.287 -5.871 7.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.047 3.953 3 C -0.199 4.199 4 C -0.145 4.145 5 C 0.013 3.987 6 H 0.019 0.981 7 C -0.558 4.558 8 H 0.087 0.913 9 C -0.185 4.185 10 N -0.559 5.559 11 Si 0.777 3.223 12 H -0.195 1.195 13 H -0.215 1.215 14 H -0.196 1.196 15 C 0.055 3.945 16 C -0.192 4.192 17 C -0.184 4.184 18 O -0.309 6.309 19 H 0.089 0.911 20 H 0.088 0.912 21 H 0.058 0.942 22 H 0.068 0.932 23 H 0.087 0.913 24 H 0.090 0.910 25 H 0.070 0.930 26 H 0.061 0.939 27 H 0.068 0.932 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.497 4.339 -5.910 7.348 hybrid contribution 0.450 -0.614 1.178 1.402 sum 0.947 3.725 -4.732 6.096 Atomic orbital electron populations 1.21958 0.94036 1.01382 1.02336 1.22268 0.94289 0.92857 0.85884 1.22014 1.00907 0.94488 1.02441 1.22825 0.99085 0.96863 0.95706 1.20160 0.94983 0.92756 0.90792 0.98133 1.21411 1.01484 1.38596 0.94353 0.91279 1.25732 0.97530 0.96317 0.98958 1.70095 1.26179 1.48451 1.11153 0.85719 0.79834 0.79322 0.77460 1.19541 1.21486 1.19572 1.22447 0.90762 0.86219 0.95045 1.21984 0.95507 1.01358 1.00365 1.21697 1.01408 0.96586 0.98740 1.88258 1.67291 1.44296 1.31046 0.91117 0.91158 0.94209 0.93161 0.91312 0.91028 0.93000 0.93931 0.93219 0.91482 0.92416 0.93956 0.93445 0.91462 0.91457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.91 8.73 71.98 0.63 -4.28 16 2 C 0.09 3.39 1.26 -10.32 -0.01 3.38 16 3 C -0.14 -4.62 8.75 71.98 0.63 -3.99 16 4 C -0.11 -5.04 4.37 31.86 0.14 -4.90 16 5 C 0.03 1.59 2.30 -10.08 -0.02 1.57 16 6 H 0.00 0.03 8.06 -2.39 -0.02 0.01 16 7 C -0.52 -27.63 7.87 25.60 0.20 -27.43 16 8 H 0.07 3.52 5.68 -2.91 -0.02 3.51 16 9 C 0.01 0.73 5.34 84.65 0.45 1.18 16 10 N -0.92 -52.72 12.19 21.45 0.26 -52.46 16 11 Si 0.95 42.84 29.54 68.60 2.03 44.86 16 12 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 13 H -0.29 -12.98 7.11 99.48 0.71 -12.28 16 14 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 15 C 0.09 3.98 1.04 -10.13 -0.01 3.97 16 16 C -0.13 -5.28 8.22 71.98 0.59 -4.69 16 17 C -0.13 -4.77 8.95 71.98 0.64 -4.12 16 18 O -0.39 -16.20 10.05 -148.98 -1.50 -17.69 16 19 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 20 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 21 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 22 H 0.05 1.68 7.93 -2.39 -0.02 1.66 16 23 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 24 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 25 H 0.05 2.65 7.32 -2.39 -0.02 2.64 16 26 H 0.04 2.09 7.43 -2.39 -0.02 2.07 16 27 H 0.26 14.26 8.31 -92.70 -0.77 13.48 16 28 H 0.07 2.66 5.97 -2.39 -0.01 2.65 16 29 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.04 1.71 7.32 -2.39 -0.02 1.69 16 31 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 Total: -1.00 -58.23 261.21 5.08 -53.15 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: 1.05 Total: 11.45 kcal Atomic # 6 Polarization: -42.55 SS G_CDS: 3.24 Total: -39.31 kcal Atomic # 7 Polarization: -52.72 SS G_CDS: 0.26 Total: -52.46 kcal Atomic # 8 Polarization: -16.20 SS G_CDS: -1.50 Total: -17.69 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.86 kcal Total: -58.23 5.08 -53.15 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711261593.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.633 kcal (2) G-P(sol) polarization free energy of solvation -58.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds