Wall clock time and date at job start Mon Mar 30 2020 02:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48499 * 109.46616 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47104 * 299.99522 * 3 2 1 6 6 H 1.48489 * 109.47200 * 59.99802 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47060 * 180.02562 * 10 9 7 12 12 N 1.46901 * 109.46769 * 180.02562 * 11 10 9 13 13 C 1.47477 * 111.00075 * 74.02853 * 12 11 10 14 14 C 1.53510 * 87.93434 * 138.70391 * 13 12 11 15 15 C 1.53002 * 114.17242 * 220.33113 * 14 13 12 16 16 N 1.46907 * 109.46943 * 268.83729 * 15 14 13 17 17 C 1.47489 * 110.99919 * 169.99763 * 12 11 10 18 18 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 19 19 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 20 20 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 21 21 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 22 22 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 23 23 H 1.09001 * 109.47194 * 299.99650 * 11 10 9 24 24 H 1.08992 * 109.47399 * 59.99823 * 11 10 9 25 25 H 1.09006 * 113.47280 * 253.46465 * 13 12 11 26 26 H 1.08995 * 113.48008 * 23.93226 * 13 12 11 27 27 H 1.09001 * 114.35108 * 87.63208 * 14 13 12 28 28 H 1.09000 * 109.47359 * 28.83256 * 15 14 13 29 29 H 1.09003 * 109.47481 * 148.83549 * 15 14 13 30 30 H 1.00894 * 111.00021 * 179.97438 * 16 15 14 31 31 H 1.00901 * 110.99988 * 303.95446 * 16 15 14 32 32 H 1.09002 * 113.47515 * 336.06433 * 17 12 11 33 33 H 1.08999 * 113.47246 * 106.52749 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4800 -4.9871 -0.0001 12 7 2.4346 -6.1037 0.0005 13 6 3.0651 -6.2593 1.3246 14 6 2.9145 -7.7777 1.1562 15 6 2.4912 -8.5105 2.4309 16 7 3.6867 -8.9396 3.1690 17 6 1.7472 -7.3866 0.2391 18 1 -0.4850 0.8401 -0.0004 19 1 0.6246 -2.5571 -0.8897 20 1 0.6240 -2.5566 0.8902 21 1 2.8718 -3.6044 0.8905 22 1 2.8718 -3.6044 -0.8895 23 1 0.8531 -5.0451 0.8897 24 1 0.8537 -5.0446 -0.8902 25 1 4.1027 -5.9265 1.3533 26 1 2.4682 -5.8516 2.1404 27 1 3.7462 -8.2573 0.6401 28 1 1.8995 -7.8412 3.0553 29 1 1.8943 -9.3836 2.1669 30 1 3.4336 -9.4261 4.0159 31 1 4.2845 -9.5093 2.5892 32 1 0.7986 -7.2796 0.7652 33 1 1.6679 -8.0089 -0.6522 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712510928.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:15 Heat of formation + Delta-G solvation = 16.262784 kcal Electronic energy + Delta-G solvation = -12403.012563 eV Core-core repulsion = 10270.942464 eV Total energy + Delta-G solvation = -2132.070099 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.05564 -35.02197 -33.77902 -31.86886 -28.96084 -26.08924 -25.79299 -23.73979 -21.47930 -19.90233 -19.70934 -16.38696 -15.96826 -15.68614 -15.11074 -14.72991 -14.39937 -14.23984 -13.32976 -12.97764 -12.40180 -12.25556 -11.77744 -11.44726 -11.17492 -10.90260 -10.65331 -10.58784 -10.37931 -10.25725 -9.62589 -9.27360 -8.99117 -8.89453 -8.57593 -8.31036 -5.96192 -3.97948 3.34118 3.41235 3.46389 4.15925 4.26070 4.50505 4.64070 4.88676 5.28431 5.29937 5.39678 5.43138 5.52843 5.57282 5.70382 5.76458 5.87673 6.04353 6.29019 6.32848 6.56862 6.76846 6.89558 6.89657 7.19946 7.20736 7.41704 7.72672 7.87265 8.04502 8.48316 9.09442 9.65965 11.15403 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.069549 B = 0.005643 C = 0.005467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 402.496823 B = 4960.982878 C = 5120.214058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.517 4.517 8 H 0.056 0.944 9 C 0.021 3.979 10 C -0.103 4.103 11 C 0.021 3.979 12 N -0.475 5.475 13 C 0.015 3.985 14 C -0.115 4.115 15 C 0.071 3.929 16 N -0.849 5.849 17 C 0.000 4.000 18 H 0.259 0.741 19 H 0.015 0.985 20 H 0.013 0.987 21 H 0.046 0.954 22 H 0.054 0.946 23 H 0.035 0.965 24 H 0.070 0.930 25 H 0.082 0.918 26 H 0.068 0.932 27 H 0.098 0.902 28 H 0.073 0.927 29 H 0.028 0.972 30 H 0.339 0.661 31 H 0.340 0.660 32 H 0.066 0.934 33 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.761 -16.760 3.782 17.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.555 4.555 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.141 4.141 11 C -0.107 4.107 12 N -0.196 5.196 13 C -0.114 4.114 14 C -0.135 4.135 15 C -0.060 4.060 16 N -0.379 5.379 17 C -0.130 4.130 18 H 0.069 0.931 19 H 0.034 0.966 20 H 0.032 0.968 21 H 0.065 0.935 22 H 0.073 0.927 23 H 0.054 0.946 24 H 0.089 0.911 25 H 0.100 0.900 26 H 0.087 0.913 27 H 0.116 0.884 28 H 0.091 0.909 29 H 0.046 0.954 30 H 0.152 0.848 31 H 0.152 0.848 32 H 0.084 0.916 33 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.157 -15.714 3.213 16.569 hybrid contribution -0.619 0.024 0.527 0.813 sum 3.538 -15.690 3.740 16.513 Atomic orbital electron populations 1.69983 1.06069 1.26404 1.51252 1.25033 0.94847 0.99267 0.95404 0.86536 0.80178 0.83784 0.77531 1.19702 1.21016 1.21050 1.21302 0.93114 0.91041 1.50064 0.92617 1.19085 0.94031 0.91474 0.97052 1.21567 0.99081 0.92679 1.00784 1.22813 0.94674 0.92628 1.00548 1.68949 1.21305 1.01590 1.27803 1.23740 1.01606 0.94114 0.91957 1.22764 0.98984 0.96412 0.95308 1.21795 0.91642 0.98127 0.94434 1.58660 1.19363 1.49882 1.09948 1.23821 0.96304 0.93931 0.98946 0.93128 0.96620 0.96840 0.93534 0.92686 0.94633 0.91111 0.89979 0.91343 0.88381 0.90862 0.95428 0.84837 0.84812 0.91588 0.90221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.60 13.29 55.43 0.74 -26.86 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.18 29.54 -169.99 -5.02 17.16 16 4 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.52 -15.17 9.11 -34.44 -0.31 -15.49 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 9 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 10 C -0.10 -2.28 5.26 -26.73 -0.14 -2.42 16 11 C 0.02 0.40 4.82 -3.82 -0.02 0.38 16 12 N -0.47 -7.66 6.41 -244.62 -1.57 -9.23 16 13 C 0.01 0.21 6.57 -7.55 -0.05 0.16 16 14 C -0.12 -1.32 4.24 -90.09 -0.38 -1.71 16 15 C 0.07 0.69 6.70 -3.82 -0.03 0.66 16 16 N -0.85 -7.46 9.62 -10.36 -0.10 -7.56 16 17 C 0.00 0.00 7.29 -7.54 -0.05 -0.06 16 18 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 19 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 20 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 21 H 0.05 1.02 7.67 -51.93 -0.40 0.62 16 22 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 23 H 0.04 0.64 7.56 -51.93 -0.39 0.25 16 24 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 25 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 26 H 0.07 1.03 7.43 -51.93 -0.39 0.64 16 27 H 0.10 1.09 8.13 -51.93 -0.42 0.67 16 28 H 0.07 0.76 7.81 -51.93 -0.41 0.36 16 29 H 0.03 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.34 2.36 9.08 -39.29 -0.36 2.01 16 31 H 0.34 2.52 8.98 -39.29 -0.35 2.17 16 32 H 0.07 0.81 7.73 -51.93 -0.40 0.41 16 33 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 272.04 15.07 4.10 4.10 Total: -1.00 -31.32 272.04 -8.69 -40.01 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -5.62 Total: -1.11 kcal Atomic # 6 Polarization: -15.29 SS G_CDS: -1.22 Total: -16.51 kcal Atomic # 7 Polarization: -42.72 SS G_CDS: -0.93 Total: -43.65 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -31.32 -8.69 -40.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712510928.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.275 kcal (2) G-P(sol) polarization free energy of solvation -31.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds