Wall clock time and date at job start Mon Mar 30 2020 02:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48499 * 109.46616 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47104 * 299.99522 * 3 2 1 6 6 H 1.48489 * 109.47200 * 59.99802 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47060 * 180.02562 * 10 9 7 12 12 N 1.46901 * 109.46769 * 180.02562 * 11 10 9 13 13 C 1.47477 * 111.00075 * 74.02853 * 12 11 10 14 14 C 1.53510 * 87.93434 * 138.70391 * 13 12 11 15 15 C 1.53002 * 114.17242 * 220.33113 * 14 13 12 16 16 N 1.46907 * 109.46943 * 268.83729 * 15 14 13 17 17 C 1.47489 * 110.99919 * 169.99763 * 12 11 10 18 18 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 19 19 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 20 20 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 21 21 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 22 22 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 23 23 H 1.09001 * 109.47194 * 299.99650 * 11 10 9 24 24 H 1.08992 * 109.47399 * 59.99823 * 11 10 9 25 25 H 1.09006 * 113.47280 * 253.46465 * 13 12 11 26 26 H 1.08995 * 113.48008 * 23.93226 * 13 12 11 27 27 H 1.09001 * 114.35108 * 87.63208 * 14 13 12 28 28 H 1.09000 * 109.47359 * 28.83256 * 15 14 13 29 29 H 1.09003 * 109.47481 * 148.83549 * 15 14 13 30 30 H 1.00894 * 111.00021 * 179.97438 * 16 15 14 31 31 H 1.00901 * 110.99988 * 303.95446 * 16 15 14 32 32 H 1.09002 * 113.47515 * 336.06433 * 17 12 11 33 33 H 1.08999 * 113.47246 * 106.52749 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4800 -4.9871 -0.0001 12 7 2.4346 -6.1037 0.0005 13 6 3.0651 -6.2593 1.3246 14 6 2.9145 -7.7777 1.1562 15 6 2.4912 -8.5105 2.4309 16 7 3.6867 -8.9396 3.1690 17 6 1.7472 -7.3866 0.2391 18 1 -0.4850 0.8401 -0.0004 19 1 0.6246 -2.5571 -0.8897 20 1 0.6240 -2.5566 0.8902 21 1 2.8718 -3.6044 0.8905 22 1 2.8718 -3.6044 -0.8895 23 1 0.8531 -5.0451 0.8897 24 1 0.8537 -5.0446 -0.8902 25 1 4.1027 -5.9265 1.3533 26 1 2.4682 -5.8516 2.1404 27 1 3.7462 -8.2573 0.6401 28 1 1.8995 -7.8412 3.0553 29 1 1.8943 -9.3836 2.1669 30 1 3.4336 -9.4261 4.0159 31 1 4.2845 -9.5093 2.5892 32 1 0.7986 -7.2796 0.7652 33 1 1.6679 -8.0089 -0.6522 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712510928.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:15 Heat of formation + Delta-G solvation = -8.095036 kcal Electronic energy + Delta-G solvation = -12404.068797 eV Core-core repulsion = 10270.942464 eV Total energy + Delta-G solvation = -2133.126334 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.19789 -36.41643 -35.29341 -33.73678 -30.48471 -27.70086 -26.89584 -25.27272 -22.99762 -21.64273 -20.72129 -18.51130 -17.03564 -16.81024 -16.52685 -16.13583 -15.80559 -15.50999 -14.67971 -14.39982 -14.06595 -13.60611 -13.35028 -13.14479 -12.75424 -12.60950 -12.19937 -12.14418 -11.92098 -11.56042 -11.40056 -11.29347 -11.01136 -10.57946 -9.87476 -9.51661 -8.22260 -6.33632 1.38935 1.39413 1.53347 2.39882 3.09519 3.10742 3.28857 3.71736 4.01187 4.11294 4.21527 4.37162 4.42088 4.51097 4.62644 4.66710 4.70938 4.79453 4.86039 4.90901 5.07680 5.16961 5.36013 5.42089 5.49658 5.70461 5.82247 6.09521 6.25072 6.26816 6.65381 6.82552 7.35758 8.90009 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.069549 B = 0.005643 C = 0.005467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 402.496823 B = 4960.982878 C = 5120.214058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.967 3.033 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.545 4.545 8 H 0.057 0.943 9 C 0.026 3.974 10 C -0.088 4.088 11 C 0.033 3.967 12 N -0.491 5.491 13 C 0.006 3.994 14 C -0.095 4.095 15 C 0.076 3.924 16 N -0.860 5.860 17 C 0.001 3.999 18 H 0.264 0.736 19 H -0.007 1.007 20 H -0.008 1.008 21 H 0.045 0.955 22 H 0.048 0.952 23 H 0.036 0.964 24 H 0.067 0.933 25 H 0.073 0.927 26 H 0.061 0.939 27 H 0.106 0.894 28 H 0.064 0.936 29 H 0.046 0.954 30 H 0.351 0.649 31 H 0.348 0.652 32 H 0.072 0.928 33 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.644 -17.509 4.050 18.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.791 3.209 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.583 4.583 8 H 0.075 0.925 9 C -0.012 4.012 10 C -0.126 4.126 11 C -0.095 4.095 12 N -0.213 5.213 13 C -0.123 4.123 14 C -0.114 4.114 15 C -0.055 4.055 16 N -0.391 5.391 17 C -0.128 4.128 18 H 0.073 0.927 19 H 0.011 0.989 20 H 0.010 0.990 21 H 0.064 0.936 22 H 0.067 0.933 23 H 0.054 0.946 24 H 0.086 0.914 25 H 0.092 0.908 26 H 0.079 0.921 27 H 0.124 0.876 28 H 0.082 0.918 29 H 0.064 0.936 30 H 0.164 0.836 31 H 0.162 0.838 32 H 0.090 0.910 33 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.047 -16.489 3.486 17.592 hybrid contribution -0.903 0.222 0.450 1.033 sum 4.144 -16.267 3.936 17.241 Atomic orbital electron populations 1.70105 1.07796 1.27793 1.51674 1.25998 0.95816 1.03411 0.94563 0.85364 0.78974 0.78556 0.77958 1.18754 1.20117 1.20115 1.21704 0.93454 0.92458 1.50650 0.92500 1.18977 0.94344 0.93059 0.94799 1.21311 0.97965 0.93057 1.00296 1.22560 0.94587 0.91927 1.00465 1.68925 1.21396 1.02065 1.28953 1.23809 1.00760 0.96745 0.90953 1.22662 0.98502 0.94329 0.95921 1.21684 0.92057 0.98417 0.93358 1.58617 1.19224 1.50657 1.10620 1.23906 0.96854 0.91999 1.00030 0.92674 0.98906 0.99000 0.93644 0.93338 0.94555 0.91413 0.90825 0.92058 0.87555 0.91753 0.93567 0.83588 0.83837 0.90962 0.88776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.09 13.29 21.45 0.28 -57.80 16 2 C 0.00 -0.02 5.46 84.65 0.46 0.45 16 3 Si 0.97 45.45 29.54 68.60 2.03 47.47 16 4 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 6 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 7 C -0.54 -32.45 9.11 25.60 0.23 -32.22 16 8 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 9 C 0.03 1.43 4.97 29.85 0.15 1.58 16 10 C -0.09 -3.97 5.26 30.59 0.16 -3.81 16 11 C 0.03 1.23 4.82 86.30 0.42 1.64 16 12 N -0.49 -15.41 6.41 -927.84 -5.95 -21.37 16 13 C 0.01 0.18 6.57 83.58 0.55 0.73 16 14 C -0.09 -1.98 4.24 -10.45 -0.04 -2.02 16 15 C 0.08 1.29 6.70 86.30 0.58 1.87 16 16 N -0.86 -13.12 9.62 -186.70 -1.80 -14.92 16 17 C 0.00 0.03 7.29 83.57 0.61 0.64 16 18 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 19 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 20 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 21 H 0.04 2.02 7.67 -2.39 -0.02 2.00 16 22 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 23 H 0.04 1.32 7.56 -2.39 -0.02 1.31 16 24 H 0.07 2.52 8.14 -2.39 -0.02 2.51 16 25 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 26 H 0.06 1.81 7.43 -2.39 -0.02 1.80 16 27 H 0.11 2.08 8.13 -2.39 -0.02 2.06 16 28 H 0.06 1.23 7.81 -2.39 -0.02 1.21 16 29 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.35 4.09 9.08 -89.70 -0.81 3.27 16 31 H 0.35 4.29 8.98 -89.69 -0.81 3.48 16 32 H 0.07 1.63 7.73 -2.39 -0.02 1.61 16 33 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -66.73 272.04 -2.86 -69.59 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -0.54 Total: 8.17 kcal Atomic # 6 Polarization: -34.25 SS G_CDS: 3.11 Total: -31.14 kcal Atomic # 7 Polarization: -86.63 SS G_CDS: -7.46 Total: -94.09 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.47 kcal Total: -66.73 -2.86 -69.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712510928.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.498 kcal (2) G-P(sol) polarization free energy of solvation -66.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds