Wall clock time and date at job start Mon Mar 30 2020 02:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46968 * 2 1 4 4 O 1.42901 * 109.47260 * 119.99551 * 2 1 3 5 5 C 1.42897 * 114.00000 * 265.06986 * 4 2 1 6 6 H 1.09003 * 109.47251 * 338.46199 * 5 4 2 7 7 C 1.53004 * 109.47379 * 98.46824 * 5 4 2 8 8 C 1.53000 * 109.46950 * 218.46563 * 5 4 2 9 9 C 1.50695 * 109.47463 * 65.00042 * 8 5 4 10 10 H 1.08011 * 119.99963 * 359.97438 * 9 8 5 11 11 C 1.37870 * 120.00414 * 180.02562 * 9 8 5 12 12 N 1.31519 * 120.00202 * 180.02562 * 11 9 8 13 13 Si 1.86803 * 120.00178 * 359.97438 * 11 9 8 14 14 H 1.48494 * 109.46953 * 89.99780 * 13 11 9 15 15 H 1.48492 * 109.47449 * 210.00432 * 13 11 9 16 16 H 1.48500 * 109.46611 * 330.00420 * 13 11 9 17 17 C 1.52996 * 109.47219 * 239.99804 * 2 1 3 18 18 C 1.53005 * 117.49905 * 128.62331 * 17 2 1 19 19 C 1.53005 * 117.49910 * 59.99928 * 17 2 1 20 20 H 1.08996 * 109.47070 * 299.83588 * 1 2 3 21 21 H 1.09000 * 109.47267 * 59.83962 * 1 2 3 22 22 H 1.09005 * 109.46891 * 179.83511 * 1 2 3 23 23 H 1.08999 * 109.47147 * 59.29812 * 7 5 4 24 24 H 1.08996 * 109.47411 * 179.30290 * 7 5 4 25 25 H 1.09001 * 109.46308 * 299.29906 * 7 5 4 26 26 H 1.09004 * 109.46895 * 184.99839 * 8 5 4 27 27 H 1.09004 * 109.47335 * 304.99913 * 8 5 4 28 28 H 0.97000 * 120.00125 * 179.97438 * 12 11 9 29 29 H 1.09001 * 115.55196 * 274.32998 * 17 2 1 30 30 H 1.08999 * 117.49602 * 359.97438 * 18 17 2 31 31 H 1.08997 * 117.49954 * 145.02257 * 18 17 2 32 32 H 1.09000 * 117.49603 * 214.97860 * 19 17 2 33 33 H 1.08993 * 117.49778 * 359.97438 * 19 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6735 1.1668 5 6 2.3059 0.1976 2.2592 6 1 2.4768 1.2064 1.8832 7 6 1.1303 0.2106 3.2384 8 6 3.5624 -0.2986 2.9775 9 6 4.7453 -0.1956 2.0496 10 1 4.6140 0.1853 1.0474 11 6 5.9950 -0.5886 2.4794 12 7 7.0274 -0.4982 1.6697 13 14 6.2221 -1.2480 4.2123 14 1 6.0327 -2.7208 4.2102 15 1 7.5909 -0.9256 4.6892 16 1 5.2230 -0.6218 5.1150 17 6 2.0400 -0.7213 -1.2492 18 6 3.0742 0.0051 -2.1116 19 6 1.6357 -0.1496 -2.6096 20 1 -0.3633 0.5113 0.8914 21 1 -0.3634 0.5163 -0.8885 22 1 -0.3633 -1.0277 -0.0030 23 1 0.9515 -0.8002 3.6049 24 1 1.3638 0.8655 4.0779 25 1 0.2381 0.5759 2.7299 26 1 3.7404 0.3127 3.8623 27 1 3.4240 -1.3379 3.2757 28 1 7.9067 -0.7743 1.9722 29 1 2.1267 -1.8045 -1.1642 30 1 3.3909 0.9970 -1.7892 31 1 3.8416 -0.6002 -2.5941 32 1 1.4569 -0.8567 -3.4196 33 1 1.0061 0.7401 -2.6146 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719020018.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:46 Heat of formation + Delta-G solvation = -38.234788 kcal Electronic energy + Delta-G solvation = -13050.307991 eV Core-core repulsion = 10883.581948 eV Total energy + Delta-G solvation = -2166.726043 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.45471 -36.31882 -33.12402 -31.54600 -29.74363 -27.84738 -23.76704 -22.76948 -21.93113 -20.22857 -19.62983 -16.65416 -16.45517 -15.11961 -14.57161 -14.08013 -13.97020 -13.15656 -12.78418 -12.43186 -12.22801 -11.98289 -11.73712 -11.60051 -11.56678 -11.11460 -10.74192 -10.51373 -10.15134 -9.99972 -9.83594 -9.66368 -9.55212 -9.10136 -8.62054 -8.45259 -5.94906 -3.90518 3.36488 3.43021 3.45916 4.05476 4.39776 4.52624 5.11241 5.24875 5.37118 5.41555 5.55717 5.64526 5.69220 5.76244 5.84766 5.91434 5.93495 6.09444 6.23897 6.29160 6.32878 6.42059 6.47764 6.62710 6.64853 6.78760 7.21708 7.30055 7.85733 8.19879 8.64037 9.11513 9.67434 11.18823 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.034404 B = 0.011014 C = 0.008687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.671130 B = 2541.504155 C = 3222.277113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.118 3.882 3 H 0.056 0.944 4 O -0.359 6.359 5 C 0.100 3.900 6 H 0.052 0.948 7 C -0.172 4.172 8 C -0.017 4.017 9 C -0.504 4.504 10 H 0.073 0.927 11 C 0.064 3.936 12 N -0.906 5.906 13 Si 0.877 3.123 14 H -0.278 1.278 15 H -0.289 1.289 16 H -0.267 1.267 17 C -0.142 4.142 18 C -0.169 4.169 19 C -0.184 4.184 20 H 0.055 0.945 21 H 0.057 0.943 22 H 0.060 0.940 23 H 0.057 0.943 24 H 0.058 0.942 25 H 0.046 0.954 26 H 0.026 0.974 27 H 0.020 0.980 28 H 0.261 0.739 29 H 0.108 0.892 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.724 1.705 -3.223 12.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.060 3.940 3 H 0.074 0.926 4 O -0.277 6.277 5 C 0.043 3.957 6 H 0.070 0.930 7 C -0.230 4.230 8 C -0.054 4.054 9 C -0.542 4.542 10 H 0.091 0.909 11 C -0.136 4.136 12 N -0.546 5.546 13 Si 0.705 3.295 14 H -0.204 1.204 15 H -0.215 1.215 16 H -0.192 1.192 17 C -0.160 4.160 18 C -0.206 4.206 19 C -0.221 4.221 20 H 0.074 0.926 21 H 0.076 0.924 22 H 0.079 0.921 23 H 0.076 0.924 24 H 0.077 0.923 25 H 0.065 0.935 26 H 0.045 0.955 27 H 0.038 0.962 28 H 0.070 0.930 29 H 0.127 0.873 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.109 0.891 33 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -11.509 1.475 -3.214 12.040 hybrid contribution 0.269 -0.173 0.868 0.925 sum -11.240 1.302 -2.346 11.556 Atomic orbital electron populations 1.22327 0.96747 1.02294 1.01230 1.21535 0.92197 0.94798 0.85488 0.92610 1.87959 1.84800 1.33702 1.21278 1.22197 0.94131 0.92891 0.86514 0.92968 1.22405 0.98757 1.01936 0.99902 1.19786 0.92861 0.96688 0.96079 1.21033 0.90624 1.42183 1.00319 0.90884 1.24996 0.96050 0.95487 0.97085 1.69915 0.99776 1.49050 1.35810 0.86822 0.77167 0.79728 0.85798 1.20374 1.21540 1.19178 1.22227 1.03447 1.00151 0.90171 1.22962 0.91820 1.02335 1.03465 1.22936 0.99010 1.02981 0.97173 0.92643 0.92419 0.92135 0.92433 0.92333 0.93498 0.95549 0.96193 0.92955 0.87342 0.88781 0.88787 0.89114 0.89240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.36 9.40 37.16 0.35 -2.01 16 2 C 0.12 2.06 2.99 -26.73 -0.08 1.98 16 3 H 0.06 0.99 6.98 -51.93 -0.36 0.63 16 4 O -0.36 -7.63 9.38 -35.23 -0.33 -7.96 16 5 C 0.10 2.09 2.72 -26.73 -0.07 2.02 16 6 H 0.05 1.08 7.20 -51.93 -0.37 0.71 16 7 C -0.17 -2.91 9.56 37.16 0.36 -2.56 16 8 C -0.02 -0.42 3.75 -27.89 -0.10 -0.52 16 9 C -0.50 -14.68 9.43 -34.45 -0.32 -15.00 16 10 H 0.07 2.30 7.99 -52.48 -0.42 1.88 16 11 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 12 N -0.91 -28.42 13.96 55.43 0.77 -27.65 16 13 Si 0.88 22.25 27.47 -169.99 -4.67 17.59 16 14 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 15 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 16 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16 17 C -0.14 -2.37 5.50 -90.62 -0.50 -2.87 16 18 C -0.17 -2.74 10.18 -26.72 -0.27 -3.02 16 19 C -0.18 -2.45 9.74 -26.72 -0.26 -2.71 16 20 H 0.05 0.74 6.39 -51.93 -0.33 0.41 16 21 H 0.06 0.69 7.29 -51.93 -0.38 0.31 16 22 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 23 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 24 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.05 0.69 6.39 -51.93 -0.33 0.36 16 26 H 0.03 0.64 7.20 -51.93 -0.37 0.26 16 27 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16 28 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 29 H 0.11 1.91 8.14 -51.93 -0.42 1.48 16 30 H 0.09 1.57 8.05 -51.93 -0.42 1.16 16 31 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 32 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.09 1.07 7.61 -51.93 -0.40 0.68 16 LS Contribution 270.12 15.07 4.07 4.07 Total: -1.00 -31.21 270.12 -6.64 -37.85 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -5.48 Total: -1.02 kcal Atomic # 6 Polarization: -21.88 SS G_CDS: -1.01 Total: -22.88 kcal Atomic # 7 Polarization: -28.42 SS G_CDS: 0.77 Total: -27.65 kcal Atomic # 8 Polarization: -7.63 SS G_CDS: -0.33 Total: -7.96 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.67 Total: 17.59 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -31.21 -6.64 -37.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719020018.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.384 kcal (2) G-P(sol) polarization free energy of solvation -31.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds