Wall clock time and date at job start Mon Mar 30 2020 02:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46968 * 2 1 4 4 O 1.42901 * 109.47260 * 119.99551 * 2 1 3 5 5 C 1.42897 * 114.00000 * 265.06986 * 4 2 1 6 6 H 1.09003 * 109.47251 * 338.46199 * 5 4 2 7 7 C 1.53004 * 109.47379 * 98.46824 * 5 4 2 8 8 C 1.53000 * 109.46950 * 218.46563 * 5 4 2 9 9 C 1.50695 * 109.47463 * 65.00042 * 8 5 4 10 10 H 1.08011 * 119.99963 * 359.97438 * 9 8 5 11 11 C 1.37870 * 120.00414 * 180.02562 * 9 8 5 12 12 N 1.31519 * 120.00202 * 180.02562 * 11 9 8 13 13 Si 1.86803 * 120.00178 * 359.97438 * 11 9 8 14 14 H 1.48494 * 109.46953 * 89.99780 * 13 11 9 15 15 H 1.48492 * 109.47449 * 210.00432 * 13 11 9 16 16 H 1.48500 * 109.46611 * 330.00420 * 13 11 9 17 17 C 1.52996 * 109.47219 * 239.99804 * 2 1 3 18 18 C 1.53005 * 117.49905 * 128.62331 * 17 2 1 19 19 C 1.53005 * 117.49910 * 59.99928 * 17 2 1 20 20 H 1.08996 * 109.47070 * 299.83588 * 1 2 3 21 21 H 1.09000 * 109.47267 * 59.83962 * 1 2 3 22 22 H 1.09005 * 109.46891 * 179.83511 * 1 2 3 23 23 H 1.08999 * 109.47147 * 59.29812 * 7 5 4 24 24 H 1.08996 * 109.47411 * 179.30290 * 7 5 4 25 25 H 1.09001 * 109.46308 * 299.29906 * 7 5 4 26 26 H 1.09004 * 109.46895 * 184.99839 * 8 5 4 27 27 H 1.09004 * 109.47335 * 304.99913 * 8 5 4 28 28 H 0.97000 * 120.00125 * 179.97438 * 12 11 9 29 29 H 1.09001 * 115.55196 * 274.32998 * 17 2 1 30 30 H 1.08999 * 117.49602 * 359.97438 * 18 17 2 31 31 H 1.08997 * 117.49954 * 145.02257 * 18 17 2 32 32 H 1.09000 * 117.49603 * 214.97860 * 19 17 2 33 33 H 1.08993 * 117.49778 * 359.97438 * 19 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6735 1.1668 5 6 2.3059 0.1976 2.2592 6 1 2.4768 1.2064 1.8832 7 6 1.1303 0.2106 3.2384 8 6 3.5624 -0.2986 2.9775 9 6 4.7453 -0.1956 2.0496 10 1 4.6140 0.1853 1.0474 11 6 5.9950 -0.5886 2.4794 12 7 7.0274 -0.4982 1.6697 13 14 6.2221 -1.2480 4.2123 14 1 6.0327 -2.7208 4.2102 15 1 7.5909 -0.9256 4.6892 16 1 5.2230 -0.6218 5.1150 17 6 2.0400 -0.7213 -1.2492 18 6 3.0742 0.0051 -2.1116 19 6 1.6357 -0.1496 -2.6096 20 1 -0.3633 0.5113 0.8914 21 1 -0.3634 0.5163 -0.8885 22 1 -0.3633 -1.0277 -0.0030 23 1 0.9515 -0.8002 3.6049 24 1 1.3638 0.8655 4.0779 25 1 0.2381 0.5759 2.7299 26 1 3.7404 0.3127 3.8623 27 1 3.4240 -1.3379 3.2757 28 1 7.9067 -0.7743 1.9722 29 1 2.1267 -1.8045 -1.1642 30 1 3.3909 0.9970 -1.7892 31 1 3.8416 -0.6002 -2.5941 32 1 1.4569 -0.8567 -3.4196 33 1 1.0061 0.7401 -2.6146 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719020018.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:46 Heat of formation + Delta-G solvation = -57.492098 kcal Electronic energy + Delta-G solvation = -13051.143050 eV Core-core repulsion = 10883.581948 eV Total energy + Delta-G solvation = -2167.561102 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.89270 -37.73760 -35.15085 -33.37574 -31.06497 -29.72023 -25.05215 -24.68543 -23.16971 -21.89612 -21.05920 -18.88162 -17.92786 -16.72103 -16.19860 -15.68635 -15.46231 -14.80435 -14.38099 -14.07025 -13.74321 -13.50043 -13.43538 -12.99876 -12.85864 -12.55149 -12.39104 -12.20362 -11.78284 -11.52626 -11.47386 -11.37868 -11.14956 -10.91843 -10.73783 -10.14980 -8.24726 -6.26358 1.35613 1.37136 1.48569 2.37982 2.72121 3.02706 3.13593 3.84542 3.98425 4.12105 4.20001 4.27286 4.36790 4.42577 4.53339 4.62467 4.73690 4.82929 4.91788 4.97788 5.07861 5.09907 5.16621 5.20206 5.24716 5.36859 5.40812 5.43841 5.69364 6.32232 6.66402 6.79901 7.35310 8.92326 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.034404 B = 0.011014 C = 0.008687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.671130 B = 2541.504155 C = 3222.277113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.112 3.888 3 H 0.045 0.955 4 O -0.388 6.388 5 C 0.100 3.900 6 H 0.045 0.955 7 C -0.161 4.161 8 C -0.017 4.017 9 C -0.511 4.511 10 H 0.029 0.971 11 C 0.000 4.000 12 N -0.953 5.953 13 Si 0.949 3.051 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.243 1.243 17 C -0.168 4.168 18 C -0.196 4.196 19 C -0.137 4.137 20 H 0.063 0.937 21 H 0.083 0.917 22 H 0.061 0.939 23 H 0.058 0.942 24 H 0.073 0.927 25 H 0.070 0.930 26 H 0.038 0.962 27 H 0.017 0.983 28 H 0.264 0.736 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.114 0.886 33 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.904 1.745 -2.230 14.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.054 3.946 3 H 0.063 0.937 4 O -0.308 6.308 5 C 0.042 3.958 6 H 0.063 0.937 7 C -0.219 4.219 8 C -0.055 4.055 9 C -0.549 4.549 10 H 0.048 0.952 11 C -0.196 4.196 12 N -0.595 5.595 13 Si 0.772 3.228 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.166 1.166 17 C -0.186 4.186 18 C -0.234 4.234 19 C -0.173 4.173 20 H 0.082 0.918 21 H 0.101 0.899 22 H 0.080 0.920 23 H 0.077 0.923 24 H 0.092 0.908 25 H 0.089 0.911 26 H 0.056 0.944 27 H 0.035 0.965 28 H 0.072 0.928 29 H 0.111 0.889 30 H 0.098 0.902 31 H 0.104 0.896 32 H 0.132 0.868 33 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -13.715 1.526 -2.225 13.978 hybrid contribution 0.986 -0.161 0.427 1.086 sum -12.729 1.365 -1.798 12.928 Atomic orbital electron populations 1.22228 0.93449 1.02882 1.02899 1.21762 0.94668 0.93864 0.84313 0.93700 1.87897 1.85497 1.34900 1.22508 1.22119 0.94361 0.92032 0.87280 0.93739 1.22284 0.97647 1.02617 0.99322 1.19781 0.93034 0.96807 0.95848 1.21306 0.92706 1.41505 0.99413 0.95241 1.25995 0.95601 0.95884 1.02125 1.70080 1.00466 1.50580 1.38369 0.85679 0.77854 0.79128 0.80096 1.19821 1.20912 1.16619 1.22287 1.05015 0.99342 0.91952 1.22970 0.93724 1.01589 1.05072 1.23045 0.95917 1.03357 0.95019 0.91845 0.89853 0.92025 0.92305 0.90771 0.91087 0.94380 0.96507 0.92770 0.88892 0.90172 0.89551 0.86760 0.86973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.00 9.40 71.98 0.68 -3.32 16 2 C 0.11 3.86 2.99 30.59 0.09 3.95 16 3 H 0.04 1.62 6.98 -2.39 -0.02 1.60 16 4 O -0.39 -16.61 9.38 -148.98 -1.40 -18.00 16 5 C 0.10 4.10 2.72 30.60 0.08 4.19 16 6 H 0.04 1.86 7.20 -2.39 -0.02 1.84 16 7 C -0.16 -5.01 9.56 71.98 0.69 -4.32 16 8 C -0.02 -0.85 3.75 29.85 0.11 -0.74 16 9 C -0.51 -30.70 9.43 25.60 0.24 -30.46 16 10 H 0.03 1.96 7.99 -2.90 -0.02 1.94 16 11 C 0.00 -0.02 5.47 84.65 0.46 0.44 16 12 N -0.95 -61.76 13.96 21.45 0.30 -61.46 16 13 Si 0.95 45.82 27.47 68.60 1.88 47.71 16 14 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 15 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 16 H -0.24 -10.70 6.54 99.48 0.65 -10.05 16 17 C -0.17 -5.65 5.50 -10.79 -0.06 -5.71 16 18 C -0.20 -6.59 10.18 30.60 0.31 -6.28 16 19 C -0.14 -3.37 9.74 30.60 0.30 -3.07 16 20 H 0.06 1.50 6.39 -2.39 -0.02 1.49 16 21 H 0.08 1.68 7.29 -2.39 -0.02 1.66 16 22 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 23 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 24 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 25 H 0.07 1.86 6.39 -2.39 -0.02 1.84 16 26 H 0.04 1.77 7.20 -2.38 -0.02 1.75 16 27 H 0.02 0.83 7.57 -2.38 -0.02 0.81 16 28 H 0.26 15.93 8.31 -92.71 -0.77 15.16 16 29 H 0.09 3.38 8.14 -2.39 -0.02 3.36 16 30 H 0.08 2.86 8.05 -2.39 -0.02 2.84 16 31 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16 32 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.11 2.29 7.61 -2.39 -0.02 2.27 16 Total: -1.00 -69.46 270.12 4.69 -64.77 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: 1.00 Total: 12.32 kcal Atomic # 6 Polarization: -48.23 SS G_CDS: 2.91 Total: -45.33 kcal Atomic # 7 Polarization: -61.76 SS G_CDS: 0.30 Total: -61.46 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: -1.40 Total: -18.00 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 1.88 Total: 47.71 kcal Total: -69.46 4.69 -64.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719020018.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.278 kcal (2) G-P(sol) polarization free energy of solvation -69.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds