Wall clock time and date at job start Mon Mar 30 2020 02:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47221 * 2 1 4 4 C 1.53002 * 109.47031 * 119.99827 * 2 1 3 5 5 C 1.50706 * 109.47195 * 185.00153 * 4 2 1 6 6 H 1.07995 * 119.99691 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00040 * 179.97438 * 5 4 2 8 8 N 1.31511 * 119.99805 * 180.02562 * 7 5 4 9 9 Si 1.86796 * 119.99881 * 0.02562 * 7 5 4 10 10 H 1.48507 * 109.47290 * 90.00133 * 9 7 5 11 11 H 1.48503 * 109.47182 * 209.99831 * 9 7 5 12 12 H 1.48494 * 109.47544 * 330.00030 * 9 7 5 13 13 O 1.42899 * 109.47297 * 239.99792 * 2 1 3 14 14 C 1.42895 * 114.00117 * 90.00267 * 13 2 1 15 15 H 1.09005 * 109.47206 * 329.99615 * 14 13 2 16 16 C 1.52997 * 109.47731 * 89.99799 * 14 13 2 17 17 C 1.53003 * 109.47119 * 210.00152 * 14 13 2 18 18 C 1.53001 * 117.51964 * 111.28106 * 17 14 13 19 19 C 1.52999 * 60.00190 * 107.47982 * 18 17 14 20 20 H 1.09002 * 109.46507 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46925 * 300.00255 * 1 2 3 22 22 H 1.09001 * 109.46857 * 60.00720 * 1 2 3 23 23 H 1.09006 * 109.47262 * 304.99792 * 4 2 1 24 24 H 1.08998 * 109.47373 * 64.99993 * 4 2 1 25 25 H 0.97000 * 120.00142 * 180.02562 * 8 7 5 26 26 H 1.09004 * 109.47169 * 300.00515 * 16 14 13 27 27 H 1.09005 * 109.46926 * 59.99644 * 16 14 13 28 28 H 1.08996 * 109.47501 * 179.97438 * 16 14 13 29 29 H 1.09002 * 115.54973 * 325.57890 * 17 14 13 30 30 H 1.09001 * 117.49733 * 214.97413 * 18 17 14 31 31 H 1.08995 * 117.49577 * 359.97438 * 18 17 14 32 32 H 1.09004 * 117.50150 * 252.51496 * 19 18 17 33 33 H 1.09004 * 117.51638 * 107.47550 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5420 -0.6149 1.3128 6 1 4.0789 -0.0854 0.5397 7 6 4.2304 -1.1925 2.3585 8 7 5.5410 -1.0993 2.4141 9 14 3.3014 -2.1076 3.6960 10 1 3.1709 -3.5379 3.3182 11 1 4.0446 -2.0000 4.9771 12 1 1.9503 -1.5127 3.8560 13 8 2.0064 -0.6737 -1.1667 14 6 2.2002 0.1828 -2.2940 15 1 1.4940 1.0118 -2.2462 16 6 3.6293 0.7290 -2.2800 17 6 1.9698 -0.6098 -3.5823 18 6 0.7355 -0.2602 -4.4162 19 6 2.1288 0.1362 -4.9087 20 1 -0.3632 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5137 -0.8901 23 1 1.6054 -0.2616 2.1371 24 1 1.7517 -1.7715 1.2057 25 1 6.0254 -1.5060 3.1495 26 1 3.7935 1.2936 -1.3622 27 1 4.3355 -0.0999 -2.3278 28 1 3.7772 1.3819 -3.1401 29 1 2.2776 -1.6550 -3.5527 30 1 0.2313 -1.0755 -4.9351 31 1 0.0872 0.5343 -4.0468 32 1 2.3973 1.1917 -4.8634 33 1 2.5416 -0.4183 -5.7515 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719020021.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:48 Heat of formation + Delta-G solvation = -39.788189 kcal Electronic energy + Delta-G solvation = -12982.014961 eV Core-core repulsion = 10815.221558 eV Total energy + Delta-G solvation = -2166.793403 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.52315 -36.45049 -33.11156 -31.60885 -29.55163 -27.83706 -24.00910 -22.61930 -22.20053 -20.04980 -19.75761 -16.83633 -16.49624 -15.12245 -14.57075 -14.13502 -14.00032 -12.97826 -12.86216 -12.66262 -12.18116 -11.82774 -11.68044 -11.60290 -11.53733 -11.23184 -10.78354 -10.46122 -10.32154 -10.23126 -9.88698 -9.74393 -9.48804 -9.13316 -8.61513 -8.45623 -5.95241 -3.90989 3.36445 3.43010 3.45813 3.87881 4.28786 4.52348 4.96708 5.04630 5.24971 5.40404 5.51035 5.60871 5.66812 5.73758 5.82926 5.92388 5.95481 5.98559 6.13341 6.18410 6.24720 6.42789 6.48476 6.63798 6.77008 6.83910 7.21131 7.30401 7.85019 8.18768 8.64154 9.11673 9.67037 11.18468 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.047471 B = 0.009048 C = 0.008105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.690689 B = 3093.932876 C = 3453.623850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.100 3.900 3 H 0.051 0.949 4 C -0.013 4.013 5 C -0.505 4.505 6 H 0.075 0.925 7 C 0.064 3.936 8 N -0.906 5.906 9 Si 0.877 3.123 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.267 1.267 13 O -0.358 6.358 14 C 0.118 3.882 15 H 0.048 0.952 16 C -0.168 4.168 17 C -0.142 4.142 18 C -0.183 4.183 19 C -0.176 4.176 20 H 0.057 0.943 21 H 0.058 0.942 22 H 0.043 0.957 23 H 0.028 0.972 24 H 0.020 0.980 25 H 0.261 0.739 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.051 0.949 29 H 0.111 0.889 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.831 3.044 -10.228 13.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.043 3.957 3 H 0.069 0.931 4 C -0.050 4.050 5 C -0.543 4.543 6 H 0.093 0.907 7 C -0.137 4.137 8 N -0.546 5.546 9 Si 0.705 3.295 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.192 1.192 13 O -0.277 6.277 14 C 0.060 3.940 15 H 0.066 0.934 16 C -0.225 4.225 17 C -0.160 4.160 18 C -0.220 4.220 19 C -0.214 4.214 20 H 0.076 0.924 21 H 0.077 0.923 22 H 0.062 0.938 23 H 0.046 0.954 24 H 0.038 0.962 25 H 0.071 0.929 26 H 0.082 0.918 27 H 0.085 0.915 28 H 0.070 0.930 29 H 0.129 0.871 30 H 0.110 0.890 31 H 0.109 0.891 32 H 0.111 0.889 33 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.642 2.798 -10.116 13.596 hybrid contribution -0.397 -0.296 0.752 0.900 sum -9.039 2.502 -9.364 13.253 Atomic orbital electron populations 1.22380 0.98221 1.01903 1.00666 1.22122 0.90655 0.96196 0.86740 0.93055 1.19724 0.97906 0.96057 0.91363 1.21076 0.89560 1.34634 1.09060 0.90664 1.25003 0.94725 0.96037 0.97888 1.69911 1.06461 1.45871 1.32346 0.86821 0.80353 0.80722 0.81603 1.20363 1.21527 1.19173 1.88018 1.86302 1.34248 1.19164 1.21437 0.95772 0.91312 0.85514 0.93368 1.22223 0.97400 1.01486 1.01405 1.22298 1.01871 1.00873 0.90944 1.23000 0.91064 1.03399 1.04494 1.22915 1.00021 1.00983 0.97433 0.92393 0.92285 0.93794 0.95441 0.96166 0.92926 0.91803 0.91537 0.92958 0.87094 0.89044 0.89107 0.88877 0.88844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.96 9.52 37.16 0.35 -2.61 16 2 C 0.10 2.10 2.45 -26.73 -0.07 2.03 16 3 H 0.05 1.06 7.62 -51.93 -0.40 0.67 16 4 C -0.01 -0.33 3.75 -27.88 -0.10 -0.43 16 5 C -0.51 -14.69 9.43 -34.44 -0.32 -15.02 16 6 H 0.08 2.34 7.86 -52.49 -0.41 1.93 16 7 C 0.06 1.89 5.47 -17.82 -0.10 1.80 16 8 N -0.91 -28.46 13.96 55.43 0.77 -27.68 16 9 Si 0.88 22.21 27.47 -169.99 -4.67 17.54 16 10 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 12 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 13 O -0.36 -7.63 9.39 -35.23 -0.33 -7.96 16 14 C 0.12 2.03 2.75 -26.73 -0.07 1.96 16 15 H 0.05 0.77 7.38 -51.93 -0.38 0.39 16 16 C -0.17 -2.91 9.37 37.16 0.35 -2.57 16 17 C -0.14 -2.08 5.50 -90.61 -0.50 -2.58 16 18 C -0.18 -2.20 10.18 -26.73 -0.27 -2.47 16 19 C -0.18 -2.07 9.74 -26.73 -0.26 -2.33 16 20 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 21 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 22 H 0.04 0.66 7.96 -51.93 -0.41 0.24 16 23 H 0.03 0.66 7.20 -51.93 -0.37 0.29 16 24 H 0.02 0.51 7.57 -51.93 -0.39 0.11 16 25 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 26 H 0.06 1.22 7.84 -51.93 -0.41 0.81 16 27 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 28 H 0.05 0.74 7.29 -51.93 -0.38 0.36 16 29 H 0.11 1.73 8.14 -51.93 -0.42 1.31 16 30 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.09 1.05 8.05 -51.93 -0.42 0.63 16 32 H 0.09 1.03 7.61 -51.93 -0.40 0.63 16 33 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 273.28 15.07 4.12 4.12 Total: -1.00 -31.16 273.28 -6.78 -37.94 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: -5.67 Total: -1.75 kcal Atomic # 6 Polarization: -21.22 SS G_CDS: -0.99 Total: -22.21 kcal Atomic # 7 Polarization: -28.46 SS G_CDS: 0.77 Total: -27.68 kcal Atomic # 8 Polarization: -7.63 SS G_CDS: -0.33 Total: -7.96 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.67 Total: 17.54 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -31.16 -6.78 -37.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719020021.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.849 kcal (2) G-P(sol) polarization free energy of solvation -31.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds