Wall clock time and date at job start Mon Mar 30 2020 02:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47221 * 2 1 4 4 C 1.53002 * 109.47031 * 119.99827 * 2 1 3 5 5 C 1.50706 * 109.47195 * 185.00153 * 4 2 1 6 6 H 1.07995 * 119.99691 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00040 * 179.97438 * 5 4 2 8 8 N 1.31511 * 119.99805 * 180.02562 * 7 5 4 9 9 Si 1.86796 * 119.99881 * 0.02562 * 7 5 4 10 10 H 1.48507 * 109.47290 * 90.00133 * 9 7 5 11 11 H 1.48503 * 109.47182 * 209.99831 * 9 7 5 12 12 H 1.48494 * 109.47544 * 330.00030 * 9 7 5 13 13 O 1.42899 * 109.47297 * 239.99792 * 2 1 3 14 14 C 1.42895 * 114.00117 * 90.00267 * 13 2 1 15 15 H 1.09005 * 109.47206 * 329.99615 * 14 13 2 16 16 C 1.52997 * 109.47731 * 89.99799 * 14 13 2 17 17 C 1.53003 * 109.47119 * 210.00152 * 14 13 2 18 18 C 1.53001 * 117.51964 * 111.28106 * 17 14 13 19 19 C 1.52999 * 60.00190 * 107.47982 * 18 17 14 20 20 H 1.09002 * 109.46507 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46925 * 300.00255 * 1 2 3 22 22 H 1.09001 * 109.46857 * 60.00720 * 1 2 3 23 23 H 1.09006 * 109.47262 * 304.99792 * 4 2 1 24 24 H 1.08998 * 109.47373 * 64.99993 * 4 2 1 25 25 H 0.97000 * 120.00142 * 180.02562 * 8 7 5 26 26 H 1.09004 * 109.47169 * 300.00515 * 16 14 13 27 27 H 1.09005 * 109.46926 * 59.99644 * 16 14 13 28 28 H 1.08996 * 109.47501 * 179.97438 * 16 14 13 29 29 H 1.09002 * 115.54973 * 325.57890 * 17 14 13 30 30 H 1.09001 * 117.49733 * 214.97413 * 18 17 14 31 31 H 1.08995 * 117.49577 * 359.97438 * 18 17 14 32 32 H 1.09004 * 117.50150 * 252.51496 * 19 18 17 33 33 H 1.09004 * 117.51638 * 107.47550 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5420 -0.6149 1.3128 6 1 4.0789 -0.0854 0.5397 7 6 4.2304 -1.1925 2.3585 8 7 5.5410 -1.0993 2.4141 9 14 3.3014 -2.1076 3.6960 10 1 3.1709 -3.5379 3.3182 11 1 4.0446 -2.0000 4.9771 12 1 1.9503 -1.5127 3.8560 13 8 2.0064 -0.6737 -1.1667 14 6 2.2002 0.1828 -2.2940 15 1 1.4940 1.0118 -2.2462 16 6 3.6293 0.7290 -2.2800 17 6 1.9698 -0.6098 -3.5823 18 6 0.7355 -0.2602 -4.4162 19 6 2.1288 0.1362 -4.9087 20 1 -0.3632 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5137 -0.8901 23 1 1.6054 -0.2616 2.1371 24 1 1.7517 -1.7715 1.2057 25 1 6.0254 -1.5060 3.1495 26 1 3.7935 1.2936 -1.3622 27 1 4.3355 -0.0999 -2.3278 28 1 3.7772 1.3819 -3.1401 29 1 2.2776 -1.6550 -3.5527 30 1 0.2313 -1.0755 -4.9351 31 1 0.0872 0.5343 -4.0468 32 1 2.3973 1.1917 -4.8634 33 1 2.5416 -0.4183 -5.7515 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719020021.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:48 Heat of formation + Delta-G solvation = -58.897552 kcal Electronic energy + Delta-G solvation = -12982.843606 eV Core-core repulsion = 10815.221558 eV Total energy + Delta-G solvation = -2167.622047 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.90215 -37.73235 -35.12665 -33.41583 -31.07157 -29.65708 -25.43403 -24.44711 -23.12987 -21.70073 -21.06874 -18.90862 -18.07647 -16.66952 -16.09040 -15.60372 -15.52346 -14.74686 -14.33040 -14.25632 -13.85314 -13.47384 -13.43529 -12.97124 -12.87660 -12.54430 -12.26927 -12.22614 -11.78726 -11.67451 -11.45391 -11.26772 -11.19456 -10.92908 -10.73477 -10.15151 -8.24404 -6.26084 1.36166 1.37674 1.49095 2.38524 2.74599 3.02009 3.13509 3.86376 4.02440 4.09684 4.17623 4.25682 4.37232 4.42719 4.54013 4.58879 4.71762 4.81313 4.90538 4.98300 5.05152 5.09240 5.20119 5.23379 5.28721 5.31970 5.39245 5.43409 5.69531 6.33490 6.66653 6.80933 7.35719 8.92642 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.047471 B = 0.009048 C = 0.008105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.690689 B = 3093.932876 C = 3453.623850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.099 3.901 3 H 0.044 0.956 4 C -0.014 4.014 5 C -0.514 4.514 6 H 0.034 0.966 7 C -0.001 4.001 8 N -0.955 5.955 9 Si 0.949 3.051 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.243 1.243 13 O -0.389 6.389 14 C 0.116 3.884 15 H 0.066 0.934 16 C -0.163 4.163 17 C -0.172 4.172 18 C -0.167 4.167 19 C -0.159 4.159 20 H 0.058 0.942 21 H 0.074 0.926 22 H 0.066 0.934 23 H 0.039 0.961 24 H 0.017 0.983 25 H 0.264 0.736 26 H 0.035 0.965 27 H 0.039 0.961 28 H 0.086 0.914 29 H 0.093 0.907 30 H 0.105 0.895 31 H 0.100 0.900 32 H 0.103 0.897 33 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.329 3.201 -10.794 15.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.041 3.959 3 H 0.062 0.938 4 C -0.051 4.051 5 C -0.552 4.552 6 H 0.053 0.947 7 C -0.197 4.197 8 N -0.596 5.596 9 Si 0.772 3.228 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.166 1.166 13 O -0.309 6.309 14 C 0.058 3.942 15 H 0.083 0.917 16 C -0.220 4.220 17 C -0.191 4.191 18 C -0.204 4.204 19 C -0.196 4.196 20 H 0.077 0.923 21 H 0.093 0.907 22 H 0.085 0.915 23 H 0.058 0.942 24 H 0.035 0.965 25 H 0.072 0.928 26 H 0.054 0.946 27 H 0.058 0.942 28 H 0.105 0.895 29 H 0.111 0.889 30 H 0.123 0.877 31 H 0.119 0.881 32 H 0.122 0.878 33 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -11.158 2.968 -10.699 15.741 hybrid contribution 0.471 -0.296 0.829 0.998 sum -10.688 2.672 -9.870 14.791 Atomic orbital electron populations 1.22253 0.94520 1.02597 1.02654 1.22038 0.93414 0.94955 0.85455 0.93774 1.19709 0.94781 0.96485 0.94111 1.21381 0.92150 1.33751 1.07891 0.94750 1.26003 0.95633 0.97190 1.00845 1.70075 1.08495 1.47453 1.33613 0.85679 0.79887 0.79204 0.77980 1.19832 1.20924 1.16586 1.87963 1.86769 1.35923 1.20228 1.21624 0.95404 0.91821 0.85346 0.91650 1.22193 0.97620 1.00751 1.01455 1.22147 1.05689 1.00099 0.91140 1.23111 0.90790 1.03792 1.02680 1.23046 0.99693 1.01292 0.95588 0.92313 0.90659 0.91469 0.94240 0.96480 0.92754 0.94606 0.94195 0.89496 0.88911 0.87662 0.88147 0.87847 0.87335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.08 9.52 71.98 0.69 -4.39 16 2 C 0.10 4.08 2.45 30.60 0.08 4.15 16 3 H 0.04 1.84 7.62 -2.39 -0.02 1.82 16 4 C -0.01 -0.67 3.75 29.85 0.11 -0.55 16 5 C -0.51 -30.78 9.43 25.60 0.24 -30.54 16 6 H 0.03 2.27 7.86 -2.91 -0.02 2.25 16 7 C 0.00 -0.07 5.47 84.65 0.46 0.40 16 8 N -0.95 -61.90 13.96 21.45 0.30 -61.60 16 9 Si 0.95 45.75 27.47 68.60 1.88 47.64 16 10 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 11 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 12 H -0.24 -10.65 6.54 99.48 0.65 -10.00 16 13 O -0.39 -16.70 9.39 -148.98 -1.40 -18.10 16 14 C 0.12 3.93 2.75 30.59 0.08 4.02 16 15 H 0.07 1.97 7.38 -2.38 -0.02 1.95 16 16 C -0.16 -5.81 9.37 71.98 0.67 -5.14 16 17 C -0.17 -4.87 5.50 -10.79 -0.06 -4.93 16 18 C -0.17 -3.50 10.18 30.59 0.31 -3.19 16 19 C -0.16 -3.28 9.74 30.60 0.30 -2.99 16 20 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 21 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 22 H 0.07 1.78 7.96 -2.39 -0.02 1.76 16 23 H 0.04 1.83 7.20 -2.38 -0.02 1.81 16 24 H 0.02 0.84 7.57 -2.39 -0.02 0.82 16 25 H 0.26 15.95 8.31 -92.71 -0.77 15.18 16 26 H 0.03 1.43 7.84 -2.39 -0.02 1.42 16 27 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 28 H 0.09 2.41 7.29 -2.39 -0.02 2.39 16 29 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 30 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.10 1.93 8.05 -2.39 -0.02 1.91 16 32 H 0.10 1.93 7.61 -2.39 -0.02 1.91 16 33 H 0.11 1.92 8.14 -2.38 -0.02 1.90 16 Total: -1.00 -69.28 273.28 4.66 -64.62 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: 0.99 Total: 10.61 kcal Atomic # 6 Polarization: -46.05 SS G_CDS: 2.89 Total: -43.17 kcal Atomic # 7 Polarization: -61.90 SS G_CDS: 0.30 Total: -61.60 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -1.40 Total: -18.10 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 1.88 Total: 47.64 kcal Total: -69.28 4.66 -64.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719020021.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.718 kcal (2) G-P(sol) polarization free energy of solvation -69.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds