Wall clock time and date at job start Mon Mar 30 2020 02:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.47471 * 2 1 4 4 C 1.53002 * 109.47054 * 239.99942 * 2 1 3 5 5 C 1.50704 * 109.47128 * 175.00235 * 4 2 1 6 6 H 1.07998 * 119.99704 * 0.02562 * 5 4 2 7 7 C 1.37873 * 120.00052 * 180.02562 * 5 4 2 8 8 N 1.31517 * 119.99662 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00138 * 179.97438 * 7 5 4 10 10 H 1.48513 * 109.47014 * 89.99881 * 9 7 5 11 11 H 1.48497 * 109.47581 * 210.00051 * 9 7 5 12 12 H 1.48502 * 109.47224 * 330.00195 * 9 7 5 13 13 O 1.42909 * 109.46943 * 120.00398 * 2 1 3 14 14 C 1.42903 * 113.99516 * 269.99727 * 13 2 1 15 15 H 1.09002 * 109.47382 * 30.00095 * 14 13 2 16 16 C 1.53002 * 109.46923 * 270.00121 * 14 13 2 17 17 C 1.53000 * 109.46726 * 150.00349 * 14 13 2 18 18 C 1.53007 * 117.49549 * 248.74479 * 17 14 13 19 19 C 1.53001 * 117.49532 * 180.08783 * 17 14 13 20 20 H 1.09001 * 109.47127 * 299.99893 * 1 2 3 21 21 H 1.08996 * 109.47325 * 60.00189 * 1 2 3 22 22 H 1.09008 * 109.47271 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47043 * 295.00256 * 4 2 1 24 24 H 1.08995 * 109.47072 * 55.00021 * 4 2 1 25 25 H 0.97006 * 119.99773 * 179.97438 * 8 7 5 26 26 H 1.08996 * 109.47407 * 60.00564 * 16 14 13 27 27 H 1.09000 * 109.46986 * 180.02562 * 16 14 13 28 28 H 1.09002 * 109.47075 * 299.99607 * 16 14 13 29 29 H 1.08998 * 115.55045 * 34.41653 * 17 14 13 30 30 H 1.08997 * 117.49929 * 359.97438 * 18 17 14 31 31 H 1.08997 * 117.49703 * 145.02482 * 18 17 14 32 32 H 1.09002 * 117.49861 * 214.97615 * 19 17 14 33 33 H 1.09001 * 117.50171 * 359.97343 * 19 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5419 -0.6150 -1.3127 6 1 4.0789 -0.0863 -0.5392 7 6 4.2303 -1.1927 -2.3583 8 7 3.5762 -1.8370 -3.3000 9 14 6.0919 -1.0604 -2.4374 10 1 6.7008 -2.2131 -1.7259 11 1 6.5289 -1.0677 -3.8565 12 1 6.5261 0.2048 -1.7923 13 8 2.0063 -0.6738 1.1668 14 6 2.2000 0.1828 2.2941 15 1 1.4939 1.0118 2.2462 16 6 3.6292 0.7289 2.2800 17 6 1.9696 -0.6098 3.5824 18 6 0.7348 -0.2602 4.4155 19 6 2.1286 0.1362 4.9087 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 1.7515 -1.7715 -1.2056 24 1 1.6053 -0.2618 -2.1369 25 1 4.0606 -2.2431 -4.0359 26 1 3.7934 1.2936 1.3622 27 1 3.7772 1.3819 3.1401 28 1 4.3354 -0.1000 2.3280 29 1 2.2774 -1.6550 3.5527 30 1 0.0869 0.5346 4.0460 31 1 0.2305 -1.0754 4.9343 32 1 2.5407 -0.4184 5.7518 33 1 2.3978 1.1915 4.8635 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719020023.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:50 Heat of formation + Delta-G solvation = -43.681944 kcal Electronic energy + Delta-G solvation = -12968.099844 eV Core-core repulsion = 10801.137595 eV Total energy + Delta-G solvation = -2166.962249 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.48411 -36.38814 -33.12838 -31.45732 -29.48433 -27.31764 -23.98923 -22.91706 -22.20594 -20.03998 -19.77985 -16.68480 -16.20484 -15.05736 -14.51874 -14.35836 -13.89604 -13.11677 -12.81522 -12.46893 -11.89559 -11.73839 -11.60777 -11.47246 -11.32943 -11.15929 -10.70377 -10.56901 -10.40972 -10.24728 -10.08694 -9.83151 -9.23294 -9.10036 -8.51779 -8.28733 -5.91929 -3.91579 3.37339 3.43001 3.46077 3.88172 4.33190 4.53067 4.97176 5.04439 5.27225 5.45019 5.52206 5.60679 5.67333 5.83336 5.86667 5.92130 6.00049 6.07796 6.15357 6.18686 6.30447 6.42302 6.50565 6.71223 6.81445 7.00687 7.61590 7.73655 8.06585 8.28836 8.51903 9.12750 9.70316 11.19986 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.040596 B = 0.009369 C = 0.008031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.563397 B = 2987.840634 C = 3485.505945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.092 3.908 3 H 0.045 0.955 4 C 0.024 3.976 5 C -0.504 4.504 6 H 0.057 0.943 7 C 0.054 3.946 8 N -0.900 5.900 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.275 1.275 13 O -0.359 6.359 14 C 0.117 3.883 15 H 0.048 0.952 16 C -0.168 4.168 17 C -0.141 4.141 18 C -0.182 4.182 19 C -0.178 4.178 20 H 0.039 0.961 21 H 0.058 0.942 22 H 0.057 0.943 23 H 0.025 0.975 24 H 0.029 0.971 25 H 0.259 0.741 26 H 0.062 0.938 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.111 0.889 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.803 4.777 12.254 13.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.034 3.966 3 H 0.063 0.937 4 C -0.013 4.013 5 C -0.542 4.542 6 H 0.075 0.925 7 C -0.147 4.147 8 N -0.540 5.540 9 Si 0.718 3.282 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.200 1.200 13 O -0.278 6.278 14 C 0.058 3.942 15 H 0.066 0.934 16 C -0.226 4.226 17 C -0.160 4.160 18 C -0.219 4.219 19 C -0.215 4.215 20 H 0.058 0.942 21 H 0.077 0.923 22 H 0.076 0.924 23 H 0.043 0.957 24 H 0.047 0.953 25 H 0.069 0.931 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.129 0.871 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.111 0.889 33 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.739 4.487 12.087 13.425 hybrid contribution 0.969 0.246 -0.120 1.007 sum -2.770 4.734 11.967 13.164 Atomic orbital electron populations 1.22345 0.98327 1.01873 1.00349 1.22399 0.90820 0.96062 0.87284 0.93678 1.19239 0.96302 0.96334 0.89454 1.21175 0.91916 1.33741 1.07390 0.92485 1.24995 0.98192 0.95595 0.95871 1.69965 1.35327 1.36481 1.12223 0.86622 0.86163 0.78409 0.76963 1.20738 1.21377 1.19986 1.88040 1.86318 1.34244 1.19186 1.21425 0.95529 0.91465 0.85786 0.93372 1.22238 0.97676 1.01337 1.01342 1.22303 1.01909 1.00834 0.90914 1.23009 0.91026 1.03407 1.04437 1.22925 1.00164 1.00929 0.97458 0.94220 0.92300 0.92375 0.95678 0.95307 0.93147 0.91943 0.92924 0.91728 0.87112 0.89078 0.89014 0.88890 0.88931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.11 9.52 37.16 0.35 -2.76 16 2 C 0.09 1.99 2.46 -26.73 -0.07 1.92 16 3 H 0.05 0.96 7.62 -51.93 -0.40 0.56 16 4 C 0.02 0.63 4.68 -27.88 -0.13 0.50 16 5 C -0.50 -14.54 8.88 -34.44 -0.31 -14.84 16 6 H 0.06 1.61 7.62 -52.49 -0.40 1.21 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -27.57 13.29 55.43 0.74 -26.83 16 9 Si 0.89 22.23 29.54 -169.99 -5.02 17.21 16 10 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 12 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 13 O -0.36 -7.76 9.39 -35.23 -0.33 -8.09 16 14 C 0.12 2.00 2.75 -26.73 -0.07 1.92 16 15 H 0.05 0.78 7.38 -51.93 -0.38 0.39 16 16 C -0.17 -2.81 9.37 37.16 0.35 -2.46 16 17 C -0.14 -2.08 5.49 -90.62 -0.50 -2.58 16 18 C -0.18 -2.21 10.18 -26.69 -0.27 -2.48 16 19 C -0.18 -2.06 9.74 -26.69 -0.26 -2.32 16 20 H 0.04 0.63 7.96 -51.93 -0.41 0.21 16 21 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 22 H 0.06 1.07 8.14 -51.92 -0.42 0.65 16 23 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 26 H 0.06 1.12 7.84 -51.93 -0.41 0.72 16 27 H 0.05 0.71 7.29 -51.93 -0.38 0.34 16 28 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.11 1.73 8.14 -51.93 -0.42 1.30 16 30 H 0.09 1.07 8.05 -51.93 -0.42 0.65 16 31 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.09 1.01 7.61 -51.93 -0.40 0.61 16 LS Contribution 276.88 15.07 4.17 4.17 Total: -1.00 -30.68 276.88 -7.15 -37.83 By element: Atomic # 1 Polarization: 3.04 SS G_CDS: -5.71 Total: -2.67 kcal Atomic # 6 Polarization: -20.63 SS G_CDS: -1.00 Total: -21.63 kcal Atomic # 7 Polarization: -27.57 SS G_CDS: 0.74 Total: -26.83 kcal Atomic # 8 Polarization: -7.76 SS G_CDS: -0.33 Total: -8.09 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -30.68 -7.15 -37.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719020023.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.850 kcal (2) G-P(sol) polarization free energy of solvation -30.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds