Wall clock time and date at job start Mon Mar 30 2020 02:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.47471 * 2 1 4 4 C 1.53002 * 109.47054 * 239.99942 * 2 1 3 5 5 C 1.50704 * 109.47128 * 175.00235 * 4 2 1 6 6 H 1.07998 * 119.99704 * 0.02562 * 5 4 2 7 7 C 1.37873 * 120.00052 * 180.02562 * 5 4 2 8 8 N 1.31517 * 119.99662 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00138 * 179.97438 * 7 5 4 10 10 H 1.48513 * 109.47014 * 89.99881 * 9 7 5 11 11 H 1.48497 * 109.47581 * 210.00051 * 9 7 5 12 12 H 1.48502 * 109.47224 * 330.00195 * 9 7 5 13 13 O 1.42909 * 109.46943 * 120.00398 * 2 1 3 14 14 C 1.42903 * 113.99516 * 269.99727 * 13 2 1 15 15 H 1.09002 * 109.47382 * 30.00095 * 14 13 2 16 16 C 1.53002 * 109.46923 * 270.00121 * 14 13 2 17 17 C 1.53000 * 109.46726 * 150.00349 * 14 13 2 18 18 C 1.53007 * 117.49549 * 248.74479 * 17 14 13 19 19 C 1.53001 * 117.49532 * 180.08783 * 17 14 13 20 20 H 1.09001 * 109.47127 * 299.99893 * 1 2 3 21 21 H 1.08996 * 109.47325 * 60.00189 * 1 2 3 22 22 H 1.09008 * 109.47271 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47043 * 295.00256 * 4 2 1 24 24 H 1.08995 * 109.47072 * 55.00021 * 4 2 1 25 25 H 0.97006 * 119.99773 * 179.97438 * 8 7 5 26 26 H 1.08996 * 109.47407 * 60.00564 * 16 14 13 27 27 H 1.09000 * 109.46986 * 180.02562 * 16 14 13 28 28 H 1.09002 * 109.47075 * 299.99607 * 16 14 13 29 29 H 1.08998 * 115.55045 * 34.41653 * 17 14 13 30 30 H 1.08997 * 117.49929 * 359.97438 * 18 17 14 31 31 H 1.08997 * 117.49703 * 145.02482 * 18 17 14 32 32 H 1.09002 * 117.49861 * 214.97615 * 19 17 14 33 33 H 1.09001 * 117.50171 * 359.97343 * 19 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5419 -0.6150 -1.3127 6 1 4.0789 -0.0863 -0.5392 7 6 4.2303 -1.1927 -2.3583 8 7 3.5762 -1.8370 -3.3000 9 14 6.0919 -1.0604 -2.4374 10 1 6.7008 -2.2131 -1.7259 11 1 6.5289 -1.0677 -3.8565 12 1 6.5261 0.2048 -1.7923 13 8 2.0063 -0.6738 1.1668 14 6 2.2000 0.1828 2.2941 15 1 1.4939 1.0118 2.2462 16 6 3.6292 0.7289 2.2800 17 6 1.9696 -0.6098 3.5824 18 6 0.7348 -0.2602 4.4155 19 6 2.1286 0.1362 4.9087 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 1.7515 -1.7715 -1.2056 24 1 1.6053 -0.2618 -2.1369 25 1 4.0606 -2.2431 -4.0359 26 1 3.7934 1.2936 1.3622 27 1 3.7772 1.3819 3.1401 28 1 4.3354 -0.1000 2.3280 29 1 2.2774 -1.6550 3.5527 30 1 0.0869 0.5346 4.0460 31 1 0.2305 -1.0754 4.9343 32 1 2.5407 -0.4184 5.7518 33 1 2.3978 1.1915 4.8635 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719020023.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:49 Heat of formation + Delta-G solvation = -61.540852 kcal Electronic energy + Delta-G solvation = -12968.874265 eV Core-core repulsion = 10801.137595 eV Total energy + Delta-G solvation = -2167.736669 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.87185 -37.70144 -35.18575 -33.21397 -30.95709 -29.27139 -25.49498 -24.73159 -23.12790 -21.74327 -21.05652 -18.51675 -18.03471 -16.71141 -16.14471 -15.59803 -15.46644 -14.75190 -14.27024 -13.88517 -13.81036 -13.35182 -13.27620 -12.95369 -12.85767 -12.61185 -12.42898 -12.27427 -12.09359 -11.56757 -11.41347 -11.19953 -11.16381 -10.86434 -10.55899 -10.11846 -8.17059 -6.24890 1.38095 1.40187 1.50502 2.42116 2.76567 3.04935 3.18190 3.88645 4.03543 4.12112 4.21423 4.28480 4.42196 4.45328 4.56935 4.60895 4.74278 4.82034 4.91256 5.00164 5.08945 5.23394 5.24435 5.26002 5.29386 5.38017 5.48561 5.57100 5.83059 6.26983 6.71313 6.88329 7.41708 8.95356 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.040596 B = 0.009369 C = 0.008031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.563397 B = 2987.840634 C = 3485.505945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.099 3.901 3 H 0.049 0.951 4 C 0.026 3.974 5 C -0.521 4.521 6 H 0.058 0.942 7 C -0.004 4.004 8 N -0.937 5.937 9 Si 0.960 3.040 10 H -0.277 1.277 11 H -0.280 1.280 12 H -0.263 1.263 13 O -0.388 6.388 14 C 0.111 3.889 15 H 0.062 0.938 16 C -0.165 4.165 17 C -0.172 4.172 18 C -0.173 4.173 19 C -0.156 4.156 20 H 0.068 0.932 21 H 0.068 0.932 22 H 0.049 0.951 23 H -0.010 1.010 24 H 0.011 0.989 25 H 0.262 0.738 26 H 0.042 0.958 27 H 0.086 0.914 28 H 0.046 0.954 29 H 0.093 0.907 30 H 0.098 0.902 31 H 0.103 0.897 32 H 0.109 0.891 33 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.507 5.998 14.083 15.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.041 3.959 3 H 0.067 0.933 4 C -0.011 4.011 5 C -0.559 4.559 6 H 0.076 0.924 7 C -0.200 4.200 8 N -0.578 5.578 9 Si 0.785 3.215 10 H -0.203 1.203 11 H -0.205 1.205 12 H -0.187 1.187 13 O -0.308 6.308 14 C 0.054 3.946 15 H 0.080 0.920 16 C -0.223 4.223 17 C -0.190 4.190 18 C -0.210 4.210 19 C -0.192 4.192 20 H 0.087 0.913 21 H 0.087 0.913 22 H 0.069 0.931 23 H 0.009 0.991 24 H 0.030 0.970 25 H 0.071 0.929 26 H 0.061 0.939 27 H 0.105 0.895 28 H 0.065 0.935 29 H 0.111 0.889 30 H 0.117 0.883 31 H 0.121 0.879 32 H 0.127 0.873 33 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -3.449 5.720 13.932 15.451 hybrid contribution 0.857 -0.145 -0.652 1.086 sum -2.592 5.575 13.281 14.635 Atomic orbital electron populations 1.22229 0.95438 1.02017 1.02265 1.22121 0.93006 0.95035 0.85709 0.93315 1.19127 0.95619 0.94683 0.91720 1.21539 0.93236 1.33670 1.07435 0.92380 1.25923 1.03506 0.95143 0.95457 1.70095 1.37437 1.37345 1.12905 0.85522 0.79790 0.78859 0.77350 1.20261 1.20546 1.18679 1.87987 1.86696 1.35983 1.20154 1.21675 0.95952 0.91771 0.85237 0.91958 1.22222 0.97181 1.01013 1.01854 1.22163 1.05441 1.00142 0.91248 1.23122 0.90989 1.03794 1.03053 1.23052 0.99341 1.01331 0.95510 0.91279 0.91335 0.93140 0.99122 0.97032 0.92918 0.93906 0.89480 0.93457 0.88911 0.88342 0.87880 0.87284 0.87681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.73 9.52 71.98 0.69 -5.04 16 2 C 0.10 4.31 2.46 30.59 0.08 4.38 16 3 H 0.05 2.06 7.62 -2.39 -0.02 2.04 16 4 C 0.03 1.41 4.68 29.85 0.14 1.55 16 5 C -0.52 -30.70 8.88 25.60 0.23 -30.47 16 6 H 0.06 3.33 7.62 -2.91 -0.02 3.31 16 7 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 8 N -0.94 -58.66 13.29 21.45 0.28 -58.38 16 9 Si 0.96 45.91 29.54 68.60 2.03 47.94 16 10 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 11 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 12 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 13 O -0.39 -16.88 9.39 -148.98 -1.40 -18.28 16 14 C 0.11 3.68 2.75 30.60 0.08 3.76 16 15 H 0.06 1.86 7.38 -2.39 -0.02 1.85 16 16 C -0.17 -5.32 9.37 71.98 0.67 -4.65 16 17 C -0.17 -4.76 5.49 -10.79 -0.06 -4.82 16 18 C -0.17 -3.68 10.18 30.62 0.31 -3.37 16 19 C -0.16 -3.08 9.74 30.62 0.30 -2.78 16 20 H 0.07 2.02 7.96 -2.39 -0.02 2.00 16 21 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 22 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 23 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 24 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 25 H 0.26 15.41 8.31 -92.70 -0.77 14.64 16 26 H 0.04 1.51 7.84 -2.39 -0.02 1.49 16 27 H 0.09 2.14 7.29 -2.39 -0.02 2.12 16 28 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 30 H 0.10 1.97 8.05 -2.39 -0.02 1.95 16 31 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.10 1.84 7.61 -2.39 -0.02 1.82 16 Total: -1.00 -66.97 276.88 4.86 -62.11 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: 1.04 Total: 7.80 kcal Atomic # 6 Polarization: -44.08 SS G_CDS: 2.90 Total: -41.19 kcal Atomic # 7 Polarization: -58.66 SS G_CDS: 0.28 Total: -58.38 kcal Atomic # 8 Polarization: -16.88 SS G_CDS: -1.40 Total: -18.28 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -66.97 4.86 -62.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719020023.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.572 kcal (2) G-P(sol) polarization free energy of solvation -66.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds