Wall clock time and date at job start Mon Mar 30 2020 02:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46976 * 2 1 4 4 O 1.42905 * 109.47369 * 119.99781 * 2 1 3 5 5 C 1.34929 * 116.99984 * 270.00428 * 4 2 1 6 6 H 1.08002 * 119.99806 * 359.97438 * 5 4 2 7 7 C 1.38636 * 119.99824 * 180.27471 * 5 4 2 8 8 N 1.31584 * 119.99830 * 359.72370 * 7 5 4 9 9 Si 1.86801 * 119.99919 * 179.72215 * 7 5 4 10 10 H 1.48496 * 109.46852 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47021 * 119.99718 * 9 7 5 12 12 H 1.48501 * 109.47039 * 240.00135 * 9 7 5 13 13 C 1.52999 * 109.47332 * 239.99991 * 2 1 3 14 14 C 1.53000 * 109.46934 * 299.99737 * 13 2 1 15 15 C 1.53006 * 109.46903 * 179.97438 * 14 13 2 16 16 C 1.52998 * 109.47122 * 60.00411 * 15 14 13 17 17 C 1.53002 * 109.46991 * 299.99972 * 16 15 14 18 18 C 1.52998 * 109.47332 * 180.02562 * 13 2 1 19 19 H 1.09000 * 109.47289 * 299.99632 * 1 2 3 20 20 H 1.08999 * 109.47363 * 60.00439 * 1 2 3 21 21 H 1.09003 * 109.46976 * 180.02562 * 1 2 3 22 22 H 0.96995 * 119.99730 * 180.02562 * 8 7 5 23 23 H 1.08999 * 109.47247 * 59.99500 * 13 2 1 24 24 H 1.08991 * 109.47205 * 299.99795 * 14 13 2 25 25 H 1.08998 * 109.47232 * 60.00163 * 14 13 2 26 26 H 1.08991 * 109.47249 * 300.00044 * 15 14 13 27 27 H 1.09001 * 109.46697 * 179.97438 * 15 14 13 28 28 H 1.09000 * 109.47289 * 180.02562 * 16 15 14 29 29 H 1.08999 * 109.47363 * 59.99403 * 16 15 14 30 30 H 1.09005 * 109.46986 * 300.00135 * 17 16 15 31 31 H 1.08995 * 109.47293 * 180.02562 * 17 16 15 32 32 H 1.09003 * 109.46976 * 300.00009 * 18 13 2 33 33 H 1.08999 * 109.47363 * 59.99570 * 18 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.2105 0.0788 2.2681 6 1 2.0147 1.1406 2.2405 7 6 2.6775 -0.5100 3.4331 8 7 2.9164 -1.8035 3.4664 9 14 2.9675 0.5330 4.9554 10 1 2.6259 1.9474 4.6588 11 1 2.1123 0.0388 6.0643 12 1 4.3954 0.4421 5.3531 13 6 2.0400 -0.7212 -1.2492 14 6 1.5301 -2.1638 -1.2492 15 6 2.0396 -2.8848 -2.4987 16 6 3.5696 -2.8848 -2.4993 17 6 4.0796 -1.4423 -2.4993 18 6 3.5700 -0.7218 -1.2489 19 1 -0.3634 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 3.2428 -2.2155 4.2816 23 1 1.6767 -0.2075 -2.1392 24 1 1.8934 -2.6775 -0.3592 25 1 0.4401 -2.1638 -1.2492 26 1 1.6760 -2.3710 -3.3885 27 1 1.6767 -3.9126 -2.4984 28 1 3.9326 -3.3981 -3.3897 29 1 3.9333 -3.3987 -1.6095 30 1 3.7159 -0.9283 -3.3891 31 1 5.1695 -1.4422 -2.5002 32 1 3.9337 0.3058 -1.2487 33 1 3.9330 -1.2358 -0.3589 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719665308.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:11 Heat of formation + Delta-G solvation = -70.118710 kcal Electronic energy + Delta-G solvation = -13341.959239 eV Core-core repulsion = 11173.850606 eV Total energy + Delta-G solvation = -2168.108633 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.49114 -35.92213 -32.41309 -30.81301 -30.22616 -28.09360 -24.54118 -22.95725 -21.88273 -19.90793 -18.95015 -17.41876 -15.42547 -14.70401 -14.16073 -13.77143 -13.59745 -13.44723 -13.07715 -12.55728 -12.11519 -11.73977 -11.53066 -11.19665 -11.13491 -10.89286 -10.68715 -10.50629 -10.42479 -10.19734 -9.82797 -9.76897 -9.38681 -9.18984 -8.86794 -7.88270 -5.88001 -3.49224 3.33616 3.37469 3.41262 4.37083 5.20415 5.21907 5.26111 5.44451 5.59906 5.73089 5.83255 5.95689 5.99813 6.05115 6.06128 6.11357 6.24208 6.33168 6.39857 6.48553 6.55241 6.65508 6.67666 6.80485 6.87614 7.02061 7.04146 7.18188 7.34325 7.54771 8.50789 9.56409 10.28369 11.33221 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.044621 B = 0.010011 C = 0.009312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.358447 B = 2796.189768 C = 3006.135000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.095 3.905 3 H 0.034 0.966 4 O -0.280 6.280 5 C -0.352 4.352 6 H 0.059 0.941 7 C 0.021 3.979 8 N -0.890 5.890 9 Si 0.919 3.081 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.284 1.284 13 C -0.074 4.074 14 C -0.111 4.111 15 C -0.117 4.117 16 C -0.118 4.118 17 C -0.116 4.116 18 C -0.111 4.111 19 H 0.051 0.949 20 H 0.040 0.960 21 H 0.057 0.943 22 H 0.255 0.745 23 H 0.059 0.941 24 H 0.080 0.920 25 H 0.055 0.945 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.050 0.950 29 H 0.064 0.936 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.051 0.949 33 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.733 0.754 -10.226 10.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.036 3.964 3 H 0.052 0.948 4 O -0.195 6.195 5 C -0.432 4.432 6 H 0.077 0.923 7 C -0.176 4.176 8 N -0.533 5.533 9 Si 0.746 3.254 10 H -0.201 1.201 11 H -0.210 1.210 12 H -0.210 1.210 13 C -0.093 4.093 14 C -0.148 4.148 15 C -0.154 4.154 16 C -0.156 4.156 17 C -0.154 4.154 18 C -0.148 4.148 19 H 0.071 0.929 20 H 0.060 0.940 21 H 0.076 0.924 22 H 0.065 0.935 23 H 0.077 0.923 24 H 0.098 0.902 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.642 0.442 -10.116 10.146 hybrid contribution 0.039 0.835 0.812 1.165 sum -0.603 1.277 -9.304 9.411 Atomic orbital electron populations 1.22346 0.98628 1.01611 1.00092 1.21767 0.91931 0.94587 0.88164 0.94761 1.85681 1.83546 1.33562 1.16695 1.20903 1.42452 0.90845 0.88977 0.92290 1.24883 0.99197 0.95955 0.97614 1.70021 1.47210 1.09082 1.27023 0.85985 0.77846 0.79209 0.82310 1.20068 1.21043 1.21036 1.21162 0.95566 0.96213 0.96345 1.21533 0.99564 0.95627 0.98080 1.21544 0.95602 0.99794 0.98505 1.21519 0.96006 0.96897 1.01162 1.21537 0.99536 0.95886 0.98398 1.21498 0.95298 0.99813 0.98219 0.92941 0.94048 0.92423 0.93486 0.92291 0.90178 0.92597 0.92977 0.92766 0.93125 0.91715 0.92981 0.92757 0.93059 0.90035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.31 9.18 37.16 0.34 -2.97 16 2 C 0.09 2.08 2.49 -26.73 -0.07 2.02 16 3 H 0.03 0.76 7.80 -51.93 -0.41 0.36 16 4 O -0.28 -7.78 8.08 -16.51 -0.13 -7.91 16 5 C -0.35 -10.28 9.77 30.88 0.30 -9.98 16 6 H 0.06 1.65 7.64 -52.49 -0.40 1.25 16 7 C 0.02 0.62 5.49 -17.51 -0.10 0.52 16 8 N -0.89 -27.85 13.67 55.48 0.76 -27.09 16 9 Si 0.92 22.33 29.55 -169.99 -5.02 17.31 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 C -0.07 -1.38 2.08 -90.62 -0.19 -1.57 16 14 C -0.11 -2.00 4.70 -26.73 -0.13 -2.13 16 15 C -0.12 -1.74 5.92 -26.73 -0.16 -1.90 16 16 C -0.12 -1.74 5.92 -26.73 -0.16 -1.90 16 17 C -0.12 -1.75 5.93 -26.71 -0.16 -1.91 16 18 C -0.11 -2.05 5.06 -26.71 -0.14 -2.19 16 19 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 20 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 21 H 0.06 1.13 6.43 -51.93 -0.33 0.79 16 22 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 23 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 24 H 0.08 1.74 7.68 -51.93 -0.40 1.34 16 25 H 0.06 0.97 6.43 -51.93 -0.33 0.64 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.08 1.81 7.68 -51.93 -0.40 1.41 16 LS Contribution 262.58 15.07 3.96 3.96 Total: -1.00 -31.14 262.58 -6.52 -37.66 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: -5.63 Total: -1.92 kcal Atomic # 6 Polarization: -21.56 SS G_CDS: -0.44 Total: -22.01 kcal Atomic # 7 Polarization: -27.85 SS G_CDS: 0.76 Total: -27.09 kcal Atomic # 8 Polarization: -7.78 SS G_CDS: -0.13 Total: -7.91 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -31.14 -6.52 -37.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719665308.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.457 kcal (2) G-P(sol) polarization free energy of solvation -31.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds