Wall clock time and date at job start Mon Mar 30 2020 02:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46976 * 2 1 4 4 O 1.42905 * 109.47369 * 119.99781 * 2 1 3 5 5 C 1.34929 * 116.99984 * 270.00428 * 4 2 1 6 6 H 1.08002 * 119.99806 * 359.97438 * 5 4 2 7 7 C 1.38636 * 119.99824 * 180.27471 * 5 4 2 8 8 N 1.31584 * 119.99830 * 359.72370 * 7 5 4 9 9 Si 1.86801 * 119.99919 * 179.72215 * 7 5 4 10 10 H 1.48496 * 109.46852 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47021 * 119.99718 * 9 7 5 12 12 H 1.48501 * 109.47039 * 240.00135 * 9 7 5 13 13 C 1.52999 * 109.47332 * 239.99991 * 2 1 3 14 14 C 1.53000 * 109.46934 * 299.99737 * 13 2 1 15 15 C 1.53006 * 109.46903 * 179.97438 * 14 13 2 16 16 C 1.52998 * 109.47122 * 60.00411 * 15 14 13 17 17 C 1.53002 * 109.46991 * 299.99972 * 16 15 14 18 18 C 1.52998 * 109.47332 * 180.02562 * 13 2 1 19 19 H 1.09000 * 109.47289 * 299.99632 * 1 2 3 20 20 H 1.08999 * 109.47363 * 60.00439 * 1 2 3 21 21 H 1.09003 * 109.46976 * 180.02562 * 1 2 3 22 22 H 0.96995 * 119.99730 * 180.02562 * 8 7 5 23 23 H 1.08999 * 109.47247 * 59.99500 * 13 2 1 24 24 H 1.08991 * 109.47205 * 299.99795 * 14 13 2 25 25 H 1.08998 * 109.47232 * 60.00163 * 14 13 2 26 26 H 1.08991 * 109.47249 * 300.00044 * 15 14 13 27 27 H 1.09001 * 109.46697 * 179.97438 * 15 14 13 28 28 H 1.09000 * 109.47289 * 180.02562 * 16 15 14 29 29 H 1.08999 * 109.47363 * 59.99403 * 16 15 14 30 30 H 1.09005 * 109.46986 * 300.00135 * 17 16 15 31 31 H 1.08995 * 109.47293 * 180.02562 * 17 16 15 32 32 H 1.09003 * 109.46976 * 300.00009 * 18 13 2 33 33 H 1.08999 * 109.47363 * 59.99570 * 18 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.2105 0.0788 2.2681 6 1 2.0147 1.1406 2.2405 7 6 2.6775 -0.5100 3.4331 8 7 2.9164 -1.8035 3.4664 9 14 2.9675 0.5330 4.9554 10 1 2.6259 1.9474 4.6588 11 1 2.1123 0.0388 6.0643 12 1 4.3954 0.4421 5.3531 13 6 2.0400 -0.7212 -1.2492 14 6 1.5301 -2.1638 -1.2492 15 6 2.0396 -2.8848 -2.4987 16 6 3.5696 -2.8848 -2.4993 17 6 4.0796 -1.4423 -2.4993 18 6 3.5700 -0.7218 -1.2489 19 1 -0.3634 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 3.2428 -2.2155 4.2816 23 1 1.6767 -0.2075 -2.1392 24 1 1.8934 -2.6775 -0.3592 25 1 0.4401 -2.1638 -1.2492 26 1 1.6760 -2.3710 -3.3885 27 1 1.6767 -3.9126 -2.4984 28 1 3.9326 -3.3981 -3.3897 29 1 3.9333 -3.3987 -1.6095 30 1 3.7159 -0.9283 -3.3891 31 1 5.1695 -1.4422 -2.5002 32 1 3.9337 0.3058 -1.2487 33 1 3.9330 -1.2358 -0.3589 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719665308.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:11 Heat of formation + Delta-G solvation = -88.920504 kcal Electronic energy + Delta-G solvation = -13342.774546 eV Core-core repulsion = 11173.850606 eV Total energy + Delta-G solvation = -2168.923940 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.03356 -37.72139 -34.33374 -32.73616 -31.57969 -29.60675 -26.74829 -24.49976 -23.24447 -21.37839 -20.50732 -19.52826 -17.28959 -16.31574 -16.02277 -15.23394 -15.19401 -14.89057 -14.67899 -14.25361 -13.78461 -13.32943 -13.18175 -12.95742 -12.82656 -12.61625 -12.16803 -12.12182 -11.90724 -11.78266 -11.54498 -11.29403 -11.10973 -10.72382 -10.62848 -10.03973 -8.12487 -5.78313 1.37912 1.42802 1.53113 2.34586 3.20199 3.76248 3.86165 3.91928 4.05270 4.35128 4.44781 4.46775 4.54695 4.65320 4.74157 4.75258 4.79186 4.90273 4.96269 5.02937 5.15805 5.21303 5.27039 5.35971 5.40472 5.44468 5.47306 5.52368 5.62549 5.81571 6.26587 7.31589 8.18061 9.12577 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.044621 B = 0.010011 C = 0.009312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.358447 B = 2796.189768 C = 3006.135000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.079 3.921 3 H 0.028 0.972 4 O -0.315 6.315 5 C -0.362 4.362 6 H 0.064 0.936 7 C -0.044 4.044 8 N -0.939 5.939 9 Si 0.996 3.004 10 H -0.260 1.260 11 H -0.278 1.278 12 H -0.278 1.278 13 C -0.071 4.071 14 C -0.107 4.107 15 C -0.111 4.111 16 C -0.120 4.120 17 C -0.109 4.109 18 C -0.109 4.109 19 H 0.035 0.965 20 H 0.081 0.919 21 H 0.052 0.948 22 H 0.257 0.743 23 H 0.096 0.904 24 H 0.028 0.972 25 H 0.063 0.937 26 H 0.080 0.920 27 H 0.064 0.936 28 H 0.082 0.918 29 H 0.036 0.964 30 H 0.080 0.920 31 H 0.062 0.938 32 H 0.051 0.949 33 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.125 1.805 -11.970 12.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.021 3.979 3 H 0.047 0.953 4 O -0.230 6.230 5 C -0.442 4.442 6 H 0.082 0.918 7 C -0.237 4.237 8 N -0.585 5.585 9 Si 0.819 3.181 10 H -0.183 1.183 11 H -0.203 1.203 12 H -0.204 1.204 13 C -0.089 4.089 14 C -0.145 4.145 15 C -0.148 4.148 16 C -0.157 4.157 17 C -0.146 4.146 18 C -0.147 4.147 19 H 0.054 0.946 20 H 0.100 0.900 21 H 0.071 0.929 22 H 0.065 0.935 23 H 0.114 0.886 24 H 0.047 0.953 25 H 0.081 0.919 26 H 0.099 0.901 27 H 0.083 0.917 28 H 0.100 0.900 29 H 0.055 0.945 30 H 0.099 0.901 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -1.046 1.509 -11.884 12.025 hybrid contribution 0.132 0.525 1.280 1.390 sum -0.914 2.034 -10.604 10.836 Atomic orbital electron populations 1.22250 0.96617 1.01687 1.01277 1.22193 0.93587 0.94442 0.87680 0.95349 1.85645 1.84277 1.35182 1.17937 1.21331 1.41802 0.91221 0.89827 0.91805 1.26061 0.98982 0.97400 1.01225 1.70202 1.48779 1.11347 1.28159 0.84823 0.77854 0.77961 0.77454 1.18340 1.20349 1.20396 1.21203 0.95452 0.96450 0.95780 1.21456 0.99887 0.95281 0.97829 1.21520 0.95507 1.00306 0.97462 1.21544 0.96076 0.96766 1.01332 1.21507 1.00134 0.95781 0.97226 1.21436 0.95557 0.99650 0.98047 0.94570 0.89985 0.92867 0.93454 0.88610 0.95350 0.91887 0.90091 0.91726 0.89953 0.94526 0.90100 0.91923 0.93023 0.95306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.16 9.18 71.98 0.66 -5.50 16 2 C 0.08 3.51 2.49 30.59 0.08 3.59 16 3 H 0.03 1.27 7.80 -2.39 -0.02 1.25 16 4 O -0.31 -18.23 8.08 -81.98 -0.66 -18.89 16 5 C -0.36 -21.76 9.77 67.92 0.66 -21.10 16 6 H 0.06 3.64 7.64 -2.91 -0.02 3.61 16 7 C -0.04 -2.67 5.49 84.83 0.47 -2.20 16 8 N -0.94 -61.05 13.67 21.61 0.30 -60.76 16 9 Si 1.00 46.50 29.55 68.60 2.03 48.53 16 10 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 11 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 12 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 13 C -0.07 -2.56 2.08 -10.79 -0.02 -2.58 16 14 C -0.11 -3.84 4.70 30.60 0.14 -3.70 16 15 C -0.11 -3.02 5.92 30.60 0.18 -2.83 16 16 C -0.12 -3.30 5.92 30.59 0.18 -3.12 16 17 C -0.11 -3.05 5.93 30.61 0.18 -2.87 16 18 C -0.11 -4.06 5.06 30.61 0.15 -3.90 16 19 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 20 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 21 H 0.05 2.06 6.43 -2.39 -0.02 2.04 16 22 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 23 H 0.10 2.81 8.14 -2.39 -0.02 2.79 16 24 H 0.03 1.29 7.68 -2.39 -0.02 1.27 16 25 H 0.06 2.12 6.43 -2.39 -0.02 2.11 16 26 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 31 H 0.06 1.64 8.14 -2.39 -0.02 1.63 16 32 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.03 1.35 7.68 -2.39 -0.02 1.33 16 Total: -1.00 -70.37 262.58 5.39 -64.98 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: 1.05 Total: 10.36 kcal Atomic # 6 Polarization: -46.90 SS G_CDS: 2.69 Total: -44.21 kcal Atomic # 7 Polarization: -61.05 SS G_CDS: 0.30 Total: -60.76 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: -0.66 Total: -18.89 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.53 kcal Total: -70.37 5.39 -64.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719665308.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.943 kcal (2) G-P(sol) polarization free energy of solvation -70.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds