Wall clock time and date at job start Mon Mar 30 2020 02:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47001 * 2 1 4 4 O 1.42905 * 109.46645 * 240.00390 * 2 1 3 5 5 C 1.34927 * 116.99967 * 90.00081 * 4 2 1 6 6 H 1.08004 * 120.00018 * 359.97438 * 5 4 2 7 7 C 1.38629 * 120.00045 * 179.97438 * 5 4 2 8 8 N 1.31583 * 120.00011 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00078 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47324 * 90.00266 * 9 7 5 11 11 H 1.48509 * 109.47256 * 210.00159 * 9 7 5 12 12 H 1.48505 * 109.47193 * 329.99692 * 9 7 5 13 13 C 1.52997 * 109.47192 * 120.00364 * 2 1 3 14 14 C 1.52996 * 109.46975 * 184.99658 * 13 2 1 15 15 C 1.53000 * 109.47328 * 180.02562 * 14 13 2 16 16 C 1.52997 * 109.47060 * 60.00126 * 15 14 13 17 17 C 1.53006 * 109.47127 * 300.00449 * 16 15 14 18 18 C 1.52997 * 109.47164 * 59.99836 * 17 16 15 19 19 H 1.09002 * 109.47375 * 179.97438 * 1 2 3 20 20 H 1.09002 * 109.47097 * 299.99485 * 1 2 3 21 21 H 1.09004 * 109.47334 * 59.99533 * 1 2 3 22 22 H 0.97003 * 119.99874 * 180.02562 * 8 7 5 23 23 H 1.08992 * 109.47280 * 305.00193 * 13 2 1 24 24 H 1.09004 * 109.47368 * 60.00217 * 14 13 2 25 25 H 1.09001 * 109.47372 * 300.00372 * 14 13 2 26 26 H 1.09002 * 109.47398 * 180.02562 * 15 14 13 27 27 H 1.09001 * 109.47194 * 300.00476 * 15 14 13 28 28 H 1.08998 * 109.47533 * 59.99948 * 16 15 14 29 29 H 1.08996 * 109.47853 * 180.02562 * 16 15 14 30 30 H 1.09001 * 109.47002 * 299.99574 * 17 16 15 31 31 H 1.09000 * 109.47050 * 179.97438 * 17 16 15 32 32 H 1.09002 * 109.47045 * 180.02562 * 18 17 16 33 33 H 1.09001 * 109.47375 * 59.99966 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1669 5 6 2.2104 0.0789 -2.2681 6 1 2.0140 1.1405 -2.2407 7 6 2.6723 -0.5107 -3.4347 8 7 2.9120 -1.8041 -3.4679 9 14 2.9556 0.5311 -4.9590 10 1 4.3506 1.0404 -4.9583 11 1 2.7310 -0.2953 -6.1723 12 1 2.0104 1.6765 -4.9585 13 6 2.0400 -0.7213 1.2492 14 6 3.5648 -0.6134 1.3135 15 6 4.0750 -1.3352 2.5623 16 6 3.6703 -2.8094 2.5004 17 6 2.1454 -2.9174 2.4359 18 6 1.6353 -2.1955 1.1871 19 1 -0.3634 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 3.2356 -2.2166 -4.2840 23 1 1.6054 -0.2619 2.1369 24 1 3.8533 0.4369 1.3572 25 1 3.9994 -1.0728 0.4257 26 1 5.1613 -1.2580 2.6085 27 1 3.6404 -0.8762 3.4504 28 1 4.1047 -3.2685 1.6124 29 1 4.0332 -3.3237 3.3902 30 1 1.7108 -2.4584 3.3239 31 1 1.8571 -3.9676 2.3913 32 1 0.5489 -2.2721 1.1415 33 1 2.0699 -2.6545 0.2991 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719665309.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:12 Heat of formation + Delta-G solvation = -70.503709 kcal Electronic energy + Delta-G solvation = -13339.056108 eV Core-core repulsion = 11170.930780 eV Total energy + Delta-G solvation = -2168.125328 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.48275 -35.92425 -32.40431 -30.79676 -30.23097 -28.12624 -24.53309 -22.92186 -21.90190 -19.89863 -18.96686 -17.41491 -15.41948 -14.69145 -14.15379 -13.78475 -13.61375 -13.46771 -13.04286 -12.54098 -12.09362 -11.75050 -11.53498 -11.22481 -11.12219 -10.88216 -10.68871 -10.49856 -10.44127 -10.22015 -9.82907 -9.76729 -9.38570 -9.18563 -8.87320 -7.88066 -5.87731 -3.49035 3.34140 3.37344 3.40646 4.37238 5.20097 5.21807 5.26175 5.44553 5.60367 5.72594 5.83468 5.95639 5.99845 6.05486 6.06180 6.11332 6.24540 6.33246 6.39580 6.48227 6.55584 6.65900 6.67488 6.80185 6.87780 7.00584 7.04764 7.18377 7.34998 7.54492 8.51021 9.56606 10.28519 11.33419 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.044195 B = 0.010007 C = 0.009351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.403985 B = 2797.281003 C = 2993.463410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.095 3.905 3 H 0.035 0.965 4 O -0.280 6.280 5 C -0.353 4.353 6 H 0.059 0.941 7 C 0.021 3.979 8 N -0.890 5.890 9 Si 0.919 3.081 10 H -0.282 1.282 11 H -0.285 1.285 12 H -0.277 1.277 13 C -0.074 4.074 14 C -0.112 4.112 15 C -0.116 4.116 16 C -0.118 4.118 17 C -0.117 4.117 18 C -0.109 4.109 19 H 0.056 0.944 20 H 0.040 0.960 21 H 0.052 0.948 22 H 0.256 0.744 23 H 0.059 0.941 24 H 0.051 0.949 25 H 0.079 0.921 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.615 0.818 10.210 10.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.035 3.965 3 H 0.053 0.947 4 O -0.194 6.194 5 C -0.433 4.433 6 H 0.077 0.923 7 C -0.176 4.176 8 N -0.533 5.533 9 Si 0.747 3.253 10 H -0.209 1.209 11 H -0.210 1.210 12 H -0.202 1.202 13 C -0.093 4.093 14 C -0.149 4.149 15 C -0.153 4.153 16 C -0.156 4.156 17 C -0.155 4.155 18 C -0.147 4.147 19 H 0.075 0.925 20 H 0.059 0.941 21 H 0.071 0.929 22 H 0.066 0.934 23 H 0.077 0.923 24 H 0.069 0.931 25 H 0.098 0.902 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.530 0.499 10.094 10.120 hybrid contribution 0.033 0.843 -0.810 1.170 sum -0.497 1.342 9.284 9.393 Atomic orbital electron populations 1.22337 0.98633 1.01568 1.00097 1.21767 0.91911 0.94603 0.88170 0.94741 1.85683 1.83570 1.33507 1.16689 1.20854 1.42681 0.90800 0.88928 0.92350 1.24877 0.99214 0.95938 0.97586 1.70011 1.47167 1.09074 1.27095 0.86058 0.78319 0.79040 0.81915 1.20877 1.21032 1.20212 1.21164 0.95536 0.96254 0.96344 1.21510 0.95689 0.99493 0.98219 1.21521 0.99725 0.95728 0.98347 1.21517 0.96322 0.96590 1.01147 1.21550 0.95594 0.99783 0.98538 1.21493 0.99989 0.95119 0.98077 0.92511 0.94053 0.92925 0.93435 0.92272 0.93052 0.90238 0.92760 0.92947 0.91718 0.93117 0.93009 0.92752 0.92667 0.89990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.31 9.28 37.16 0.34 -2.97 16 2 C 0.09 2.08 2.44 -26.73 -0.07 2.02 16 3 H 0.03 0.76 7.80 -51.93 -0.41 0.36 16 4 O -0.28 -7.77 8.08 -16.50 -0.13 -7.91 16 5 C -0.35 -10.31 9.77 30.88 0.30 -10.01 16 6 H 0.06 1.63 7.65 -52.48 -0.40 1.23 16 7 C 0.02 0.63 5.49 -17.51 -0.10 0.54 16 8 N -0.89 -27.85 13.67 55.48 0.76 -27.10 16 9 Si 0.92 22.33 29.55 -169.99 -5.02 17.31 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 C -0.07 -1.38 2.03 -90.62 -0.18 -1.57 16 14 C -0.11 -2.04 5.10 -26.73 -0.14 -2.18 16 15 C -0.12 -1.73 5.92 -26.73 -0.16 -1.89 16 16 C -0.12 -1.74 5.92 -26.73 -0.16 -1.90 16 17 C -0.12 -1.76 5.92 -26.73 -0.16 -1.92 16 18 C -0.11 -2.01 4.76 -26.73 -0.13 -2.14 16 19 H 0.06 1.11 6.57 -51.93 -0.34 0.77 16 20 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 21 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 22 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 23 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 24 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.08 1.74 7.82 -51.93 -0.41 1.33 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.05 0.98 6.56 -51.93 -0.34 0.64 16 33 H 0.08 1.82 7.56 -51.93 -0.39 1.42 16 LS Contribution 262.96 15.07 3.96 3.96 Total: -1.00 -31.12 262.96 -6.52 -37.64 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -5.65 Total: -1.90 kcal Atomic # 6 Polarization: -21.57 SS G_CDS: -0.44 Total: -22.01 kcal Atomic # 7 Polarization: -27.85 SS G_CDS: 0.76 Total: -27.10 kcal Atomic # 8 Polarization: -7.77 SS G_CDS: -0.13 Total: -7.91 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -31.12 -6.52 -37.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719665309.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.860 kcal (2) G-P(sol) polarization free energy of solvation -31.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds