Wall clock time and date at job start Mon Mar 30 2020 02:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08998 * 109.46465 * 2 1 4 4 C 1.52995 * 109.47033 * 240.00529 * 2 1 3 5 5 C 1.50704 * 109.46981 * 175.00025 * 4 2 1 6 6 H 1.07996 * 119.99880 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99871 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99801 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 120.00462 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.47200 * 89.99714 * 9 7 5 11 11 H 1.48496 * 109.47326 * 209.99721 * 9 7 5 12 12 H 1.48500 * 109.46760 * 330.00090 * 9 7 5 13 13 O 1.42896 * 109.47070 * 120.00231 * 2 1 3 14 14 C 1.42904 * 113.99667 * 269.99931 * 13 2 1 15 15 C 1.53006 * 109.47094 * 180.02562 * 14 13 2 16 16 C 1.53780 * 113.61448 * 274.14220 * 15 14 13 17 17 C 1.53948 * 87.01697 * 220.04552 * 16 15 14 18 18 C 1.53780 * 87.11633 * 25.36271 * 17 16 15 19 19 H 1.08992 * 109.47052 * 299.99817 * 1 2 3 20 20 H 1.09002 * 109.47094 * 60.00401 * 1 2 3 21 21 H 1.09007 * 109.46682 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47115 * 294.99714 * 4 2 1 23 23 H 1.08994 * 109.47398 * 54.99748 * 4 2 1 24 24 H 0.97006 * 120.00082 * 180.02562 * 8 7 5 25 25 H 1.09006 * 109.47347 * 60.00505 * 14 13 2 26 26 H 1.08996 * 109.47837 * 300.00108 * 14 13 2 27 27 H 1.09002 * 112.84791 * 45.33537 * 15 14 13 28 28 H 1.09000 * 113.61461 * 334.56153 * 16 15 14 29 29 H 1.08995 * 113.61894 * 105.46890 * 16 15 14 30 30 H 1.09005 * 113.54029 * 270.80899 * 17 16 15 31 31 H 1.09006 * 113.66851 * 139.93263 * 17 16 15 32 32 H 1.08994 * 113.61871 * 220.09800 * 18 17 16 33 33 H 1.09002 * 113.69172 * 89.19391 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5420 -0.6148 -1.3127 6 1 4.0790 -0.0854 -0.5396 7 6 4.2305 -1.1933 -2.3578 8 7 5.5412 -1.1000 -2.4134 9 14 3.3018 -2.1095 -3.6948 10 1 2.9401 -1.1653 -4.7823 11 1 4.1607 -3.1899 -4.2427 12 1 2.0662 -2.7018 -3.1222 13 8 2.0064 -0.6737 1.1667 14 6 2.2001 0.1829 2.2940 15 6 2.7092 -0.6406 3.4788 16 6 1.5866 -1.2909 4.3046 17 6 2.4065 -0.9277 5.5560 18 6 3.0313 0.2039 4.7230 19 1 -0.3633 0.5138 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0278 -0.0005 22 1 1.7517 -1.7714 -1.2057 23 1 1.6054 -0.2616 -2.1369 24 1 6.0256 -1.5067 -3.1489 25 1 1.2538 0.6547 2.5589 26 1 2.9319 0.9514 2.0451 27 1 3.5049 -1.3324 3.2027 28 1 0.6346 -0.7643 4.2384 29 1 1.4900 -2.3642 4.1412 30 1 3.1190 -1.6991 5.8486 31 1 1.7996 -0.5728 6.3890 32 1 4.0992 0.3356 4.8967 33 1 2.4760 1.1407 4.7706 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719687428.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:39 Heat of formation + Delta-G solvation = -46.505870 kcal Electronic energy + Delta-G solvation = -12780.947780 eV Core-core repulsion = 10613.863076 eV Total energy + Delta-G solvation = -2167.084704 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.87271 -37.08111 -33.09385 -31.43984 -27.89264 -27.80242 -25.47239 -22.99381 -22.20304 -20.09245 -19.11654 -16.68387 -16.20225 -15.29440 -14.96560 -14.48939 -14.12704 -13.17410 -12.71380 -12.48482 -12.34298 -12.15460 -11.76371 -11.69645 -11.46833 -11.37412 -10.61947 -10.55258 -10.29839 -10.13570 -9.98912 -9.70265 -9.53996 -9.12210 -8.63160 -8.46552 -5.95895 -3.91874 3.34936 3.42618 3.47280 4.31391 4.51952 4.76500 4.84692 4.94337 5.14898 5.39490 5.62400 5.67870 5.73794 5.81218 5.86023 5.89890 5.95239 6.00295 6.04635 6.07600 6.20188 6.30553 6.43787 6.62877 6.68679 6.77837 7.17170 7.32658 7.84422 8.17438 8.63181 9.10156 9.66200 11.17978 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.043736 B = 0.008211 C = 0.007434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.054111 B = 3409.181289 C = 3765.513786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.099 3.901 3 H 0.050 0.950 4 C -0.013 4.013 5 C -0.506 4.506 6 H 0.072 0.928 7 C 0.064 3.936 8 N -0.906 5.906 9 Si 0.878 3.122 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.265 1.265 13 O -0.365 6.365 14 C 0.073 3.927 15 C -0.106 4.106 16 C -0.133 4.133 17 C -0.143 4.143 18 C -0.135 4.135 19 H 0.043 0.957 20 H 0.058 0.942 21 H 0.057 0.943 22 H 0.025 0.975 23 H 0.023 0.977 24 H 0.261 0.739 25 H 0.035 0.965 26 H 0.044 0.956 27 H 0.100 0.900 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.486 1.965 11.379 14.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.042 3.958 3 H 0.069 0.931 4 C -0.051 4.051 5 C -0.544 4.544 6 H 0.090 0.910 7 C -0.137 4.137 8 N -0.546 5.546 9 Si 0.705 3.295 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.190 1.190 13 O -0.284 6.284 14 C -0.004 4.004 15 C -0.125 4.125 16 C -0.171 4.171 17 C -0.180 4.180 18 C -0.172 4.172 19 H 0.062 0.938 20 H 0.077 0.923 21 H 0.076 0.924 22 H 0.043 0.957 23 H 0.042 0.958 24 H 0.071 0.929 25 H 0.053 0.947 26 H 0.063 0.937 27 H 0.118 0.882 28 H 0.095 0.905 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.298 1.712 11.273 14.103 hybrid contribution -0.394 -0.188 -0.820 0.929 sum -8.692 1.523 10.453 13.680 Atomic orbital electron populations 1.22361 0.98212 1.01861 1.00695 1.22083 0.90729 0.96147 0.86857 0.93139 1.19717 0.97764 0.96369 0.91218 1.21041 0.89629 1.34607 1.09105 0.91011 1.25009 0.94743 0.95978 0.97929 1.69918 1.06507 1.45861 1.32323 0.86811 0.80334 0.80037 0.82309 1.20402 1.21407 1.19009 1.87989 1.86620 1.34428 1.19403 1.22389 0.97910 0.93053 0.87073 1.22519 0.99118 0.98416 0.92412 1.22955 0.97467 1.01120 0.95525 1.22839 0.99619 0.98759 0.96786 1.22893 1.01002 0.97523 0.95797 0.93799 0.92263 0.92413 0.95703 0.95842 0.92897 0.94651 0.93745 0.88208 0.90483 0.91454 0.90296 0.91821 0.91366 0.90320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.97 9.53 37.16 0.35 -2.61 16 2 C 0.10 2.11 2.66 -26.73 -0.07 2.03 16 3 H 0.05 1.06 7.79 -51.93 -0.40 0.66 16 4 C -0.01 -0.34 3.75 -27.88 -0.10 -0.44 16 5 C -0.51 -14.94 9.43 -34.44 -0.32 -15.27 16 6 H 0.07 2.30 7.99 -52.49 -0.42 1.88 16 7 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 8 N -0.91 -28.68 13.96 55.43 0.77 -27.91 16 9 Si 0.88 22.27 27.47 -169.99 -4.67 17.60 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 12 H -0.27 -6.51 6.54 56.52 0.37 -6.14 16 13 O -0.37 -7.90 9.74 -35.23 -0.34 -8.24 16 14 C 0.07 1.26 5.57 37.16 0.21 1.47 16 15 C -0.11 -1.61 4.00 -89.80 -0.36 -1.97 16 16 C -0.13 -1.73 7.65 -25.83 -0.20 -1.92 16 17 C -0.14 -1.57 8.09 -25.83 -0.21 -1.78 16 18 C -0.13 -1.62 7.65 -25.92 -0.20 -1.82 16 19 H 0.04 0.66 7.87 -51.93 -0.41 0.25 16 20 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 21 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 22 H 0.02 0.64 7.20 -51.93 -0.37 0.26 16 23 H 0.02 0.56 7.57 -51.93 -0.39 0.17 16 24 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 25 H 0.04 0.54 7.61 -51.93 -0.39 0.15 16 26 H 0.04 0.79 8.08 -51.93 -0.42 0.37 16 27 H 0.10 1.67 8.14 -51.93 -0.42 1.25 16 28 H 0.08 0.95 7.92 -51.93 -0.41 0.54 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.08 0.87 8.10 -51.93 -0.42 0.45 16 LS Contribution 271.14 15.07 4.09 4.09 Total: -1.00 -31.62 271.14 -6.93 -38.55 By element: Atomic # 1 Polarization: 2.18 SS G_CDS: -5.77 Total: -3.59 kcal Atomic # 6 Polarization: -19.49 SS G_CDS: -1.00 Total: -20.49 kcal Atomic # 7 Polarization: -28.68 SS G_CDS: 0.77 Total: -27.91 kcal Atomic # 8 Polarization: -7.90 SS G_CDS: -0.34 Total: -8.24 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.67 Total: 17.60 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -31.62 -6.93 -38.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719687428.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.958 kcal (2) G-P(sol) polarization free energy of solvation -31.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds