Wall clock time and date at job start Mon Mar 30 2020 02:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08998 * 109.46465 * 2 1 4 4 C 1.52995 * 109.47033 * 240.00529 * 2 1 3 5 5 C 1.50704 * 109.46981 * 175.00025 * 4 2 1 6 6 H 1.07996 * 119.99880 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99871 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99801 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 120.00462 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.47200 * 89.99714 * 9 7 5 11 11 H 1.48496 * 109.47326 * 209.99721 * 9 7 5 12 12 H 1.48500 * 109.46760 * 330.00090 * 9 7 5 13 13 O 1.42896 * 109.47070 * 120.00231 * 2 1 3 14 14 C 1.42904 * 113.99667 * 269.99931 * 13 2 1 15 15 C 1.53006 * 109.47094 * 180.02562 * 14 13 2 16 16 C 1.53780 * 113.61448 * 274.14220 * 15 14 13 17 17 C 1.53948 * 87.01697 * 220.04552 * 16 15 14 18 18 C 1.53780 * 87.11633 * 25.36271 * 17 16 15 19 19 H 1.08992 * 109.47052 * 299.99817 * 1 2 3 20 20 H 1.09002 * 109.47094 * 60.00401 * 1 2 3 21 21 H 1.09007 * 109.46682 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47115 * 294.99714 * 4 2 1 23 23 H 1.08994 * 109.47398 * 54.99748 * 4 2 1 24 24 H 0.97006 * 120.00082 * 180.02562 * 8 7 5 25 25 H 1.09006 * 109.47347 * 60.00505 * 14 13 2 26 26 H 1.08996 * 109.47837 * 300.00108 * 14 13 2 27 27 H 1.09002 * 112.84791 * 45.33537 * 15 14 13 28 28 H 1.09000 * 113.61461 * 334.56153 * 16 15 14 29 29 H 1.08995 * 113.61894 * 105.46890 * 16 15 14 30 30 H 1.09005 * 113.54029 * 270.80899 * 17 16 15 31 31 H 1.09006 * 113.66851 * 139.93263 * 17 16 15 32 32 H 1.08994 * 113.61871 * 220.09800 * 18 17 16 33 33 H 1.09002 * 113.69172 * 89.19391 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5420 -0.6148 -1.3127 6 1 4.0790 -0.0854 -0.5396 7 6 4.2305 -1.1933 -2.3578 8 7 5.5412 -1.1000 -2.4134 9 14 3.3018 -2.1095 -3.6948 10 1 2.9401 -1.1653 -4.7823 11 1 4.1607 -3.1899 -4.2427 12 1 2.0662 -2.7018 -3.1222 13 8 2.0064 -0.6737 1.1667 14 6 2.2001 0.1829 2.2940 15 6 2.7092 -0.6406 3.4788 16 6 1.5866 -1.2909 4.3046 17 6 2.4065 -0.9277 5.5560 18 6 3.0313 0.2039 4.7230 19 1 -0.3633 0.5138 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0278 -0.0005 22 1 1.7517 -1.7714 -1.2057 23 1 1.6054 -0.2616 -2.1369 24 1 6.0256 -1.5067 -3.1489 25 1 1.2538 0.6547 2.5589 26 1 2.9319 0.9514 2.0451 27 1 3.5049 -1.3324 3.2027 28 1 0.6346 -0.7643 4.2384 29 1 1.4900 -2.3642 4.1412 30 1 3.1190 -1.6991 5.8486 31 1 1.7996 -0.5728 6.3890 32 1 4.0992 0.3356 4.8967 33 1 2.4760 1.1407 4.7706 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719687428.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:38 Heat of formation + Delta-G solvation = -66.164691 kcal Electronic energy + Delta-G solvation = -12781.800250 eV Core-core repulsion = 10613.863076 eV Total energy + Delta-G solvation = -2167.937174 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.07594 -38.55559 -35.17901 -33.31178 -29.75694 -29.10510 -26.46920 -24.85530 -23.49763 -21.83776 -20.22615 -18.92296 -17.71408 -16.69340 -16.42377 -16.05786 -15.66080 -14.86150 -14.32883 -14.12019 -13.85812 -13.50541 -13.30821 -13.08599 -12.90495 -12.62278 -12.43429 -12.16076 -11.77156 -11.54371 -11.39153 -11.28769 -11.11205 -11.02958 -10.76105 -10.21981 -8.27376 -6.30090 1.34710 1.38185 1.50290 2.37347 2.88500 3.10341 3.72030 3.79024 3.92641 4.02379 4.16467 4.33737 4.40821 4.53094 4.62451 4.66816 4.84591 4.86317 4.86623 4.98490 5.05132 5.09053 5.13218 5.18812 5.26240 5.39494 5.41638 5.60731 5.66977 6.28400 6.60285 6.76464 7.32139 8.90117 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.043736 B = 0.008211 C = 0.007434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.054111 B = 3409.181289 C = 3765.513786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.096 3.904 3 H 0.043 0.957 4 C -0.013 4.013 5 C -0.518 4.518 6 H 0.025 0.975 7 C -0.001 4.001 8 N -0.955 5.955 9 Si 0.953 3.047 10 H -0.260 1.260 11 H -0.285 1.285 12 H -0.249 1.249 13 O -0.396 6.396 14 C 0.070 3.930 15 C -0.124 4.124 16 C -0.130 4.130 17 C -0.130 4.130 18 C -0.127 4.127 19 H 0.067 0.933 20 H 0.076 0.924 21 H 0.058 0.942 22 H 0.020 0.980 23 H 0.040 0.960 24 H 0.265 0.735 25 H 0.063 0.937 26 H 0.027 0.973 27 H 0.070 0.930 28 H 0.089 0.911 29 H 0.060 0.940 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.068 0.932 33 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.949 1.875 11.717 16.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.039 3.961 3 H 0.061 0.939 4 C -0.050 4.050 5 C -0.556 4.556 6 H 0.043 0.957 7 C -0.197 4.197 8 N -0.597 5.597 9 Si 0.776 3.224 10 H -0.185 1.185 11 H -0.210 1.210 12 H -0.172 1.172 13 O -0.316 6.316 14 C -0.006 4.006 15 C -0.143 4.143 16 C -0.168 4.168 17 C -0.167 4.167 18 C -0.165 4.165 19 H 0.086 0.914 20 H 0.095 0.905 21 H 0.077 0.923 22 H 0.038 0.962 23 H 0.058 0.942 24 H 0.074 0.926 25 H 0.081 0.919 26 H 0.045 0.955 27 H 0.088 0.912 28 H 0.107 0.893 29 H 0.078 0.922 30 H 0.100 0.900 31 H 0.106 0.894 32 H 0.087 0.913 33 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.775 1.636 11.629 15.938 hybrid contribution 0.470 -0.108 -0.861 0.987 sum -10.305 1.527 10.768 14.983 Atomic orbital electron populations 1.22231 0.94290 1.02612 1.02790 1.22042 0.93681 0.94883 0.85539 0.93906 1.19704 0.94512 0.96727 0.94105 1.21329 0.92321 1.34039 1.07930 0.95710 1.26055 0.95687 0.97025 1.00927 1.70085 1.08614 1.47312 1.33641 0.85614 0.79206 0.78730 0.78826 1.18514 1.21033 1.17236 1.87934 1.87125 1.36064 1.20499 1.22603 0.98818 0.92758 0.86425 1.22616 0.99658 0.99090 0.92902 1.22974 0.97357 1.00625 0.95817 1.22793 0.99256 0.98063 0.96567 1.22915 1.01551 0.98226 0.93796 0.91418 0.90503 0.92288 0.96197 0.94173 0.92612 0.91941 0.95496 0.91185 0.89258 0.92156 0.90000 0.89406 0.91294 0.88785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.06 9.53 71.99 0.69 -4.38 16 2 C 0.10 4.02 2.66 30.60 0.08 4.10 16 3 H 0.04 1.81 7.79 -2.39 -0.02 1.80 16 4 C -0.01 -0.65 3.75 29.85 0.11 -0.54 16 5 C -0.52 -31.57 9.43 25.60 0.24 -31.33 16 6 H 0.02 1.68 7.99 -2.91 -0.02 1.65 16 7 C 0.00 -0.07 5.47 84.65 0.46 0.39 16 8 N -0.96 -62.27 13.96 21.45 0.30 -61.97 16 9 Si 0.95 45.75 27.47 68.60 1.88 47.63 16 10 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 11 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 12 H -0.25 -11.19 6.54 99.48 0.65 -10.54 16 13 O -0.40 -17.35 9.74 -148.98 -1.45 -18.80 16 14 C 0.07 2.45 5.57 71.98 0.40 2.85 16 15 C -0.12 -3.76 4.00 -10.27 -0.04 -3.80 16 16 C -0.13 -3.17 7.65 31.18 0.24 -2.93 16 17 C -0.13 -2.54 8.09 31.18 0.25 -2.29 16 18 C -0.13 -2.89 7.65 31.12 0.24 -2.65 16 19 H 0.07 1.79 7.87 -2.39 -0.02 1.77 16 20 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 21 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 22 H 0.02 0.99 7.20 -2.38 -0.02 0.98 16 23 H 0.04 1.84 7.57 -2.39 -0.02 1.83 16 24 H 0.27 16.05 8.31 -92.70 -0.77 15.28 16 25 H 0.06 1.81 7.61 -2.38 -0.02 1.79 16 26 H 0.03 1.00 8.08 -2.39 -0.02 0.98 16 27 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 28 H 0.09 1.95 7.92 -2.39 -0.02 1.93 16 29 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 31 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 32 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.09 1.86 8.10 -2.39 -0.02 1.84 16 Total: -1.00 -70.22 271.14 4.39 -65.82 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: 0.99 Total: 7.90 kcal Atomic # 6 Polarization: -43.26 SS G_CDS: 2.67 Total: -40.59 kcal Atomic # 7 Polarization: -62.27 SS G_CDS: 0.30 Total: -61.97 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: -1.45 Total: -18.80 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 1.88 Total: 47.63 kcal Total: -70.22 4.39 -65.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719687428.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.340 kcal (2) G-P(sol) polarization free energy of solvation -70.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds