Wall clock time and date at job start Mon Mar 30 2020 02:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46617 * 2 1 4 4 C 1.53002 * 109.47329 * 119.99807 * 2 1 3 5 5 C 1.50696 * 109.46919 * 185.00033 * 4 2 1 6 6 H 1.07999 * 120.00202 * 359.97438 * 5 4 2 7 7 C 1.37884 * 119.99746 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99573 * 0.27650 * 7 5 4 9 9 Si 1.86800 * 119.99781 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47364 * 359.97438 * 9 7 5 11 11 H 1.48508 * 109.46883 * 120.00040 * 9 7 5 12 12 H 1.48497 * 109.46870 * 239.99850 * 9 7 5 13 13 O 1.42900 * 109.46901 * 240.00186 * 2 1 3 14 14 C 1.42895 * 113.99990 * 89.99931 * 13 2 1 15 15 C 1.53007 * 109.47251 * 179.97438 * 14 13 2 16 16 C 1.53781 * 113.61372 * 274.13982 * 15 14 13 17 17 C 1.53957 * 87.01801 * 220.04563 * 16 15 14 18 18 C 1.53772 * 113.61839 * 176.52707 * 15 14 13 19 19 H 1.08999 * 109.47143 * 299.99750 * 1 2 3 20 20 H 1.09001 * 109.47337 * 60.00388 * 1 2 3 21 21 H 1.09005 * 109.47098 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.46497 * 65.00298 * 4 2 1 23 23 H 1.08999 * 109.46623 * 305.00362 * 4 2 1 24 24 H 0.97001 * 120.00651 * 359.71956 * 8 7 5 25 25 H 1.09001 * 109.47072 * 299.99700 * 14 13 2 26 26 H 1.08999 * 109.47596 * 59.99832 * 14 13 2 27 27 H 1.08999 * 112.84966 * 45.32989 * 15 14 13 28 28 H 1.09003 * 113.61200 * 334.55859 * 16 15 14 29 29 H 1.09004 * 113.61887 * 105.46817 * 16 15 14 30 30 H 1.09002 * 113.53696 * 270.81018 * 17 16 15 31 31 H 1.08998 * 113.66973 * 139.93159 * 17 16 15 32 32 H 1.08999 * 113.61784 * 254.52968 * 18 15 14 33 33 H 1.09003 * 113.61487 * 25.35300 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6148 1.3126 6 1 4.0790 -0.0861 0.5391 7 6 4.2305 -1.1934 2.3578 8 7 3.5770 -1.8428 3.2963 9 14 6.0922 -1.0621 2.4360 10 1 6.5839 -0.2927 1.2649 11 1 6.4873 -0.3666 3.6872 12 1 6.6856 -2.4233 2.4178 13 8 2.0063 -0.6736 -1.1668 14 6 2.2000 0.1830 -2.2941 15 6 2.7090 -0.6405 -3.4789 16 6 4.2360 -0.8214 -3.4927 17 6 4.1660 -0.6158 -5.0169 18 6 2.8702 0.1754 -4.7723 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.7517 -1.7715 1.2055 23 1 1.6054 -0.2617 2.1369 24 1 2.6102 -1.9112 3.2555 25 1 1.2536 0.6547 -2.5588 26 1 2.9318 0.9514 -2.0451 27 1 2.1579 -1.5710 -3.6155 28 1 4.7741 -0.0307 -2.9698 29 1 4.5602 -1.8202 -3.2003 30 1 4.0144 -1.5402 -5.5743 31 1 4.9796 -0.0092 -5.4145 32 1 2.0933 -0.0198 -5.5115 33 1 3.0328 1.2394 -4.5999 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719687430.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:40 Heat of formation + Delta-G solvation = -54.287562 kcal Electronic energy + Delta-G solvation = -12857.121899 eV Core-core repulsion = 10689.699756 eV Total energy + Delta-G solvation = -2167.422143 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.87326 -37.08664 -33.43080 -31.20894 -27.85732 -26.93870 -25.43380 -23.04707 -22.29657 -20.39101 -19.12429 -16.72351 -16.16338 -15.51223 -14.77537 -14.45278 -13.67755 -13.21295 -12.98844 -12.58193 -12.30512 -12.18400 -11.61415 -11.39324 -11.27575 -10.96737 -10.83420 -10.58013 -10.32735 -10.14128 -10.07036 -9.88515 -9.51126 -8.83150 -8.35825 -8.24638 -6.26931 -3.93310 3.48275 3.53191 3.66413 4.29421 4.61662 4.76234 4.84309 4.98039 5.14456 5.51132 5.62866 5.68631 5.75284 5.77578 5.85001 5.88411 5.94100 5.96383 6.06497 6.12213 6.28821 6.32502 6.42424 6.66454 6.67794 6.83897 7.32542 7.44966 8.15303 8.32833 8.57305 8.98216 9.76390 11.14059 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.029170 B = 0.010204 C = 0.007867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.657244 B = 2743.436518 C = 3558.301812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.098 3.902 3 H 0.046 0.954 4 C 0.010 3.990 5 C -0.585 4.585 6 H 0.049 0.951 7 C 0.011 3.989 8 N -0.919 5.919 9 Si 1.073 2.927 10 H -0.290 1.290 11 H -0.288 1.288 12 H -0.287 1.287 13 O -0.366 6.366 14 C 0.072 3.928 15 C -0.106 4.106 16 C -0.131 4.131 17 C -0.144 4.144 18 C -0.134 4.134 19 H 0.058 0.942 20 H 0.041 0.959 21 H 0.057 0.943 22 H 0.016 0.984 23 H 0.019 0.981 24 H 0.268 0.732 25 H 0.034 0.966 26 H 0.043 0.957 27 H 0.093 0.907 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.890 4.338 -13.459 14.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.040 3.960 3 H 0.064 0.936 4 C -0.027 4.027 5 C -0.623 4.623 6 H 0.067 0.933 7 C -0.192 4.192 8 N -0.556 5.556 9 Si 0.902 3.098 10 H -0.216 1.216 11 H -0.215 1.215 12 H -0.214 1.214 13 O -0.285 6.285 14 C -0.005 4.005 15 C -0.124 4.124 16 C -0.168 4.168 17 C -0.181 4.181 18 C -0.172 4.172 19 H 0.077 0.923 20 H 0.061 0.939 21 H 0.076 0.924 22 H 0.034 0.966 23 H 0.037 0.963 24 H 0.078 0.922 25 H 0.053 0.947 26 H 0.061 0.939 27 H 0.112 0.888 28 H 0.100 0.900 29 H 0.088 0.912 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.526 3.716 -12.572 13.120 hybrid contribution -1.497 0.729 -0.890 1.888 sum -2.024 4.445 -13.462 14.321 Atomic orbital electron populations 1.22348 0.98268 1.01832 1.00568 1.22174 0.90744 0.95963 0.87077 0.93598 1.19364 0.97414 0.95690 0.90263 1.21997 0.91611 1.38031 1.10664 0.93281 1.25810 1.06819 0.93680 0.92852 1.70720 1.10278 1.40152 1.34494 0.83489 0.74515 0.76359 0.75408 1.21588 1.21496 1.21393 1.87995 1.86605 1.34434 1.19475 1.22397 0.97987 0.93009 0.87131 1.22489 0.97052 0.99520 0.93383 1.22943 0.96021 1.02764 0.95117 1.22855 0.97707 1.00185 0.97355 1.22895 0.97951 0.99267 0.97038 0.92288 0.93940 0.92437 0.96596 0.96299 0.92189 0.94739 0.93922 0.88834 0.90021 0.91181 0.90421 0.91697 0.91673 0.90244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.16 9.53 37.16 0.35 -2.80 16 2 C 0.10 2.18 2.66 -26.73 -0.07 2.11 16 3 H 0.05 1.01 7.79 -51.93 -0.40 0.60 16 4 C 0.01 0.26 4.00 -27.88 -0.11 0.14 16 5 C -0.58 -17.31 8.88 -34.44 -0.31 -17.61 16 6 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 7 C 0.01 0.33 5.46 -17.82 -0.10 0.23 16 8 N -0.92 -29.03 13.65 55.43 0.76 -28.27 16 9 Si 1.07 26.37 29.90 -169.99 -5.08 21.29 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 O -0.37 -8.13 9.74 -35.23 -0.34 -8.47 16 14 C 0.07 1.26 5.57 37.16 0.21 1.47 16 15 C -0.11 -1.59 4.00 -89.81 -0.36 -1.95 16 16 C -0.13 -1.94 7.65 -25.83 -0.20 -2.14 16 17 C -0.14 -1.67 8.09 -25.83 -0.21 -1.88 16 18 C -0.13 -1.58 7.65 -25.92 -0.20 -1.78 16 19 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 20 H 0.04 0.68 7.87 -51.93 -0.41 0.27 16 21 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 22 H 0.02 0.45 8.00 -51.93 -0.42 0.04 16 23 H 0.02 0.52 8.01 -51.93 -0.42 0.10 16 24 H 0.27 8.41 7.22 -40.82 -0.29 8.12 16 25 H 0.03 0.54 7.87 -51.93 -0.41 0.13 16 26 H 0.04 0.75 7.82 -51.93 -0.41 0.35 16 27 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 28 H 0.08 1.26 7.92 -51.93 -0.41 0.85 16 29 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.08 0.89 8.10 -51.93 -0.42 0.47 16 LS Contribution 273.43 15.07 4.12 4.12 Total: -1.00 -31.85 273.43 -7.28 -39.13 By element: Atomic # 1 Polarization: 2.15 SS G_CDS: -5.75 Total: -3.59 kcal Atomic # 6 Polarization: -23.23 SS G_CDS: -0.99 Total: -24.21 kcal Atomic # 7 Polarization: -29.03 SS G_CDS: 0.76 Total: -28.27 kcal Atomic # 8 Polarization: -8.13 SS G_CDS: -0.34 Total: -8.47 kcal Atomic # 14 Polarization: 26.37 SS G_CDS: -5.08 Total: 21.29 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -31.85 -7.28 -39.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719687430.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.153 kcal (2) G-P(sol) polarization free energy of solvation -31.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds