Wall clock time and date at job start Mon Mar 30 2020 02:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46617 * 2 1 4 4 C 1.53002 * 109.47329 * 119.99807 * 2 1 3 5 5 C 1.50696 * 109.46919 * 185.00033 * 4 2 1 6 6 H 1.07999 * 120.00202 * 359.97438 * 5 4 2 7 7 C 1.37884 * 119.99746 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99573 * 0.27650 * 7 5 4 9 9 Si 1.86800 * 119.99781 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47364 * 359.97438 * 9 7 5 11 11 H 1.48508 * 109.46883 * 120.00040 * 9 7 5 12 12 H 1.48497 * 109.46870 * 239.99850 * 9 7 5 13 13 O 1.42900 * 109.46901 * 240.00186 * 2 1 3 14 14 C 1.42895 * 113.99990 * 89.99931 * 13 2 1 15 15 C 1.53007 * 109.47251 * 179.97438 * 14 13 2 16 16 C 1.53781 * 113.61372 * 274.13982 * 15 14 13 17 17 C 1.53957 * 87.01801 * 220.04563 * 16 15 14 18 18 C 1.53772 * 113.61839 * 176.52707 * 15 14 13 19 19 H 1.08999 * 109.47143 * 299.99750 * 1 2 3 20 20 H 1.09001 * 109.47337 * 60.00388 * 1 2 3 21 21 H 1.09005 * 109.47098 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.46497 * 65.00298 * 4 2 1 23 23 H 1.08999 * 109.46623 * 305.00362 * 4 2 1 24 24 H 0.97001 * 120.00651 * 359.71956 * 8 7 5 25 25 H 1.09001 * 109.47072 * 299.99700 * 14 13 2 26 26 H 1.08999 * 109.47596 * 59.99832 * 14 13 2 27 27 H 1.08999 * 112.84966 * 45.32989 * 15 14 13 28 28 H 1.09003 * 113.61200 * 334.55859 * 16 15 14 29 29 H 1.09004 * 113.61887 * 105.46817 * 16 15 14 30 30 H 1.09002 * 113.53696 * 270.81018 * 17 16 15 31 31 H 1.08998 * 113.66973 * 139.93159 * 17 16 15 32 32 H 1.08999 * 113.61784 * 254.52968 * 18 15 14 33 33 H 1.09003 * 113.61487 * 25.35300 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6148 1.3126 6 1 4.0790 -0.0861 0.5391 7 6 4.2305 -1.1934 2.3578 8 7 3.5770 -1.8428 3.2963 9 14 6.0922 -1.0621 2.4360 10 1 6.5839 -0.2927 1.2649 11 1 6.4873 -0.3666 3.6872 12 1 6.6856 -2.4233 2.4178 13 8 2.0063 -0.6736 -1.1668 14 6 2.2000 0.1830 -2.2941 15 6 2.7090 -0.6405 -3.4789 16 6 4.2360 -0.8214 -3.4927 17 6 4.1660 -0.6158 -5.0169 18 6 2.8702 0.1754 -4.7723 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.7517 -1.7715 1.2055 23 1 1.6054 -0.2617 2.1369 24 1 2.6102 -1.9112 3.2555 25 1 1.2536 0.6547 -2.5588 26 1 2.9318 0.9514 -2.0451 27 1 2.1579 -1.5710 -3.6155 28 1 4.7741 -0.0307 -2.9698 29 1 4.5602 -1.8202 -3.2003 30 1 4.0144 -1.5402 -5.5743 31 1 4.9796 -0.0092 -5.4145 32 1 2.0933 -0.0198 -5.5115 33 1 3.0328 1.2394 -4.5999 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719687430.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:40 Heat of formation + Delta-G solvation = -73.277393 kcal Electronic energy + Delta-G solvation = -12857.945360 eV Core-core repulsion = 10689.699756 eV Total energy + Delta-G solvation = -2168.245604 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.11314 -38.62903 -35.58841 -33.04050 -29.16465 -28.94153 -26.47922 -25.14985 -23.56472 -22.18261 -20.25066 -18.96640 -17.74330 -16.82343 -16.09721 -15.91336 -15.63880 -14.94880 -14.63873 -14.22334 -13.59345 -13.42035 -13.34628 -13.09815 -12.81066 -12.53874 -12.51665 -12.37997 -11.95434 -11.44682 -11.41510 -11.17670 -11.13397 -10.78810 -10.55888 -10.22394 -8.68381 -6.35893 1.48758 1.59386 1.75798 2.55184 2.82747 3.17957 3.69276 3.77050 3.89547 3.98012 4.08852 4.26406 4.40334 4.42681 4.56803 4.60418 4.76314 4.83369 4.85633 4.94916 4.99606 5.07265 5.08519 5.11609 5.20963 5.31570 5.37004 5.59017 5.99515 6.18329 6.50368 6.62922 7.42953 8.72972 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.029170 B = 0.010204 C = 0.007867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.657244 B = 2743.436518 C = 3558.301812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.101 3.899 3 H 0.047 0.953 4 C 0.008 3.992 5 C -0.598 4.598 6 H 0.043 0.957 7 C -0.042 4.042 8 N -0.941 5.941 9 Si 1.120 2.880 10 H -0.272 1.272 11 H -0.274 1.274 12 H -0.279 1.279 13 O -0.396 6.396 14 C 0.067 3.933 15 C -0.116 4.116 16 C -0.147 4.147 17 C -0.129 4.129 18 C -0.119 4.119 19 H 0.069 0.931 20 H 0.072 0.928 21 H 0.051 0.949 22 H -0.012 1.012 23 H 0.009 0.991 24 H 0.255 0.745 25 H 0.057 0.943 26 H 0.036 0.964 27 H 0.088 0.912 28 H 0.069 0.931 29 H 0.052 0.948 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.567 5.343 -15.287 16.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.044 3.956 3 H 0.065 0.935 4 C -0.029 4.029 5 C -0.636 4.636 6 H 0.062 0.938 7 C -0.239 4.239 8 N -0.579 5.579 9 Si 0.942 3.058 10 H -0.197 1.197 11 H -0.199 1.199 12 H -0.205 1.205 13 O -0.316 6.316 14 C -0.010 4.010 15 C -0.134 4.134 16 C -0.185 4.185 17 C -0.166 4.166 18 C -0.156 4.156 19 H 0.088 0.912 20 H 0.091 0.909 21 H 0.071 0.929 22 H 0.006 0.994 23 H 0.027 0.973 24 H 0.064 0.936 25 H 0.075 0.925 26 H 0.054 0.946 27 H 0.107 0.893 28 H 0.088 0.912 29 H 0.071 0.929 30 H 0.108 0.892 31 H 0.099 0.901 32 H 0.104 0.896 33 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.227 4.731 -14.416 15.174 hybrid contribution -1.624 0.409 -0.333 1.707 sum -1.851 5.140 -14.749 15.728 Atomic orbital electron populations 1.22226 0.94971 1.02176 1.02595 1.21981 0.93278 0.94823 0.85524 0.93516 1.19311 0.96328 0.94536 0.92696 1.22338 0.93202 1.37685 1.10419 0.93822 1.27405 1.11391 0.92737 0.92347 1.70857 1.09655 1.41798 1.35631 0.82902 0.69115 0.77150 0.76660 1.19715 1.19947 1.20511 1.87943 1.87005 1.36147 1.20476 1.22664 0.99071 0.92925 0.86293 1.22611 0.96718 0.99893 0.94169 1.23020 0.95997 1.01357 0.98082 1.22815 0.98215 1.01007 0.94593 1.22857 0.98438 0.99214 0.95086 0.91192 0.90947 0.92948 0.99352 0.97294 0.93584 0.92482 0.94581 0.89341 0.91225 0.92925 0.89193 0.90107 0.89583 0.89403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.70 9.53 71.98 0.69 -5.02 16 2 C 0.10 4.51 2.66 30.59 0.08 4.59 16 3 H 0.05 2.03 7.79 -2.39 -0.02 2.01 16 4 C 0.01 0.46 4.00 29.85 0.12 0.58 16 5 C -0.60 -36.10 8.88 25.60 0.23 -35.87 16 6 H 0.04 2.62 7.74 -2.91 -0.02 2.60 16 7 C -0.04 -2.57 5.46 84.66 0.46 -2.11 16 8 N -0.94 -60.58 13.65 21.45 0.29 -60.28 16 9 Si 1.12 52.82 29.90 68.60 2.05 54.88 16 10 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 11 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 12 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 13 O -0.40 -17.58 9.74 -148.98 -1.45 -19.04 16 14 C 0.07 2.26 5.57 71.98 0.40 2.66 16 15 C -0.12 -3.31 4.00 -10.27 -0.04 -3.36 16 16 C -0.15 -4.27 7.65 31.18 0.24 -4.03 16 17 C -0.13 -2.65 8.09 31.18 0.25 -2.40 16 18 C -0.12 -2.42 7.65 31.12 0.24 -2.19 16 19 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 20 H 0.07 2.11 7.87 -2.39 -0.02 2.09 16 21 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 22 H -0.01 -0.71 8.00 -2.39 -0.02 -0.73 16 23 H 0.01 0.50 8.01 -2.39 -0.02 0.48 16 24 H 0.25 16.58 7.22 -92.71 -0.67 15.91 16 25 H 0.06 1.66 7.87 -2.39 -0.02 1.64 16 26 H 0.04 1.25 7.82 -2.39 -0.02 1.23 16 27 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 28 H 0.07 2.15 7.92 -2.39 -0.02 2.13 16 29 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.09 1.67 8.10 -2.39 -0.02 1.65 16 Total: -1.00 -69.26 273.43 4.70 -64.56 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: 1.14 Total: 7.02 kcal Atomic # 6 Polarization: -49.80 SS G_CDS: 2.66 Total: -47.14 kcal Atomic # 7 Polarization: -60.58 SS G_CDS: 0.29 Total: -60.28 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: -1.45 Total: -19.04 kcal Atomic # 14 Polarization: 52.82 SS G_CDS: 2.05 Total: 54.88 kcal Total: -69.26 4.70 -64.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719687430.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.719 kcal (2) G-P(sol) polarization free energy of solvation -69.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds