Wall clock time and date at job start Mon Mar 30 2020 02:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47161 * 2 1 4 4 H 1.09005 * 109.47378 * 56.26338 * 3 2 1 5 5 O 1.42901 * 109.47317 * 296.26844 * 3 2 1 6 6 C 1.42903 * 114.00473 * 140.49299 * 5 3 2 7 7 C 1.50693 * 109.47225 * 185.28002 * 6 5 3 8 8 H 1.08007 * 120.00439 * 0.02562 * 7 6 5 9 9 C 1.37881 * 119.99990 * 180.02562 * 7 6 5 10 10 N 1.31516 * 120.00100 * 180.02562 * 9 7 6 11 11 Si 1.86801 * 119.99986 * 359.97438 * 9 7 6 12 12 H 1.48496 * 109.47090 * 90.00011 * 11 9 7 13 13 H 1.48500 * 109.47157 * 210.00297 * 11 9 7 14 14 H 1.48499 * 109.47042 * 330.00266 * 11 9 7 15 15 C 1.52998 * 109.47373 * 176.26637 * 3 2 1 16 16 C 1.53782 * 113.61618 * 277.49676 * 15 3 2 17 17 C 1.53781 * 87.08051 * 220.01797 * 16 15 3 18 18 C 1.53780 * 87.08365 * 25.43104 * 17 16 15 19 19 H 1.08997 * 109.47235 * 305.55244 * 1 2 3 20 20 H 1.08999 * 109.47266 * 65.55996 * 1 2 3 21 21 H 1.09006 * 109.47292 * 185.55627 * 1 2 3 22 22 H 1.09001 * 109.47265 * 239.99960 * 2 1 3 23 23 H 1.09002 * 109.47164 * 120.00097 * 2 1 3 24 24 H 1.09005 * 109.46724 * 65.28258 * 6 5 3 25 25 H 1.08999 * 109.46778 * 305.28154 * 6 5 3 26 26 H 0.96994 * 119.99997 * 180.02562 * 10 9 7 27 27 H 1.08998 * 112.84885 * 48.81100 * 15 3 2 28 28 H 1.08996 * 113.61114 * 334.56464 * 16 15 3 29 29 H 1.08993 * 113.61127 * 105.47253 * 16 15 3 30 30 H 1.09000 * 113.61800 * 270.88373 * 17 16 15 31 31 H 1.09004 * 113.69063 * 139.99049 * 17 16 15 32 32 H 1.08997 * 113.61645 * 220.01256 * 18 17 16 33 33 H 1.09009 * 113.61042 * 89.11261 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.6230 1.9753 0.8546 5 8 1.6366 2.0903 -1.2081 6 6 1.2270 3.4479 -1.0310 7 6 0.7034 3.9891 -2.3363 8 1 0.6849 3.3592 -3.2135 9 6 0.2481 5.2884 -2.4109 10 7 -0.2093 5.7605 -3.5500 11 14 0.2795 6.3776 -0.8936 12 1 1.5762 7.0984 -0.8285 13 1 -0.8305 7.3613 -0.9674 14 1 0.1179 5.5390 0.3212 15 6 3.5670 1.4435 0.0939 16 6 4.0961 1.2905 1.5298 17 6 5.1662 2.3321 1.1626 18 6 4.1828 2.8527 0.1011 19 1 -0.3633 0.5975 0.8361 20 1 -0.3634 0.4252 -0.9356 21 1 -0.3634 -1.0229 0.0995 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5139 0.8900 24 1 2.0790 4.0449 -0.7057 25 1 0.4413 3.4949 -0.2769 26 1 -0.5293 6.6747 -3.6025 27 1 4.0355 0.7661 -0.6200 28 1 3.3962 1.6335 2.2917 29 1 4.5035 0.3021 1.7419 30 1 6.0728 1.8971 0.7419 31 1 5.3704 3.0492 1.9577 32 1 4.6603 3.1254 -0.8400 33 1 3.5067 3.6227 0.4726 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719694197.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:58 Heat of formation + Delta-G solvation = -46.276654 kcal Electronic energy + Delta-G solvation = -13105.397716 eV Core-core repulsion = 10938.322952 eV Total energy + Delta-G solvation = -2167.074764 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.16013 -36.31163 -33.21789 -32.24456 -28.33796 -26.98143 -25.35138 -23.15749 -21.82072 -20.55726 -19.13621 -16.79446 -15.96283 -15.42071 -14.96236 -14.45956 -13.76735 -13.29202 -13.01576 -12.64118 -12.31430 -12.15145 -11.70458 -11.63860 -11.36326 -11.04166 -10.91861 -10.60662 -10.48919 -10.26440 -10.06953 -9.82242 -9.77081 -9.11957 -8.73590 -8.28041 -6.09989 -4.08096 3.24731 3.31868 3.33077 4.36437 4.57244 4.83115 4.93245 5.07004 5.15027 5.22375 5.46217 5.52417 5.65814 5.76976 5.84702 5.95149 5.99075 6.05079 6.22520 6.23923 6.24540 6.42063 6.48249 6.52962 6.70970 6.74233 6.76283 7.06668 7.64322 8.10321 8.71789 9.02390 9.50049 11.03241 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.031679 B = 0.011157 C = 0.009250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.646478 B = 2509.008034 C = 3026.238823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.119 4.119 3 C 0.094 3.906 4 H 0.051 0.949 5 O -0.369 6.369 6 C 0.168 3.832 7 C -0.516 4.516 8 H 0.082 0.918 9 C 0.072 3.928 10 N -0.896 5.896 11 Si 0.873 3.127 12 H -0.273 1.273 13 H -0.282 1.282 14 H -0.267 1.267 15 C -0.125 4.125 16 C -0.135 4.135 17 C -0.144 4.144 18 C -0.133 4.133 19 H 0.047 0.953 20 H 0.067 0.933 21 H 0.046 0.954 22 H 0.066 0.934 23 H 0.062 0.938 24 H 0.002 0.998 25 H -0.001 1.001 26 H 0.266 0.734 27 H 0.090 0.910 28 H 0.077 0.923 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.694 -8.012 10.798 15.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.157 4.157 3 C 0.035 3.965 4 H 0.069 0.931 5 O -0.288 6.288 6 C 0.093 3.907 7 C -0.554 4.554 8 H 0.100 0.900 9 C -0.130 4.130 10 N -0.535 5.535 11 Si 0.700 3.300 12 H -0.199 1.199 13 H -0.208 1.208 14 H -0.191 1.191 15 C -0.143 4.143 16 C -0.172 4.172 17 C -0.182 4.182 18 C -0.171 4.171 19 H 0.066 0.934 20 H 0.087 0.913 21 H 0.065 0.935 22 H 0.084 0.916 23 H 0.081 0.919 24 H 0.019 0.981 25 H 0.017 0.983 26 H 0.076 0.924 27 H 0.108 0.892 28 H 0.096 0.904 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 6.604 -7.930 10.523 14.739 hybrid contribution -0.017 0.882 0.952 1.298 sum 6.587 -7.048 11.475 14.991 Atomic orbital electron populations 1.21705 0.95663 1.00442 1.02874 1.21620 0.96422 0.96097 1.01531 1.22014 0.91874 0.93368 0.89278 0.93134 1.87928 1.84991 1.27233 1.28659 1.20696 0.92893 0.79160 0.97951 1.20922 1.41108 0.97759 0.95637 0.90042 1.24762 0.94823 0.97392 0.95983 1.69876 1.42465 1.16340 1.24826 0.86893 0.78276 0.80932 0.83943 1.19902 1.20806 1.19136 1.23005 0.96557 0.98120 0.96637 1.22916 0.98425 0.98995 0.96912 1.22843 0.97265 0.98767 0.99297 1.22892 0.98039 0.96950 0.99175 0.93385 0.91349 0.93522 0.91569 0.91914 0.98077 0.98344 0.92432 0.89178 0.90418 0.91854 0.90540 0.91927 0.91243 0.90092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 9.73 37.15 0.36 -1.94 16 2 C -0.12 -1.81 5.64 -26.74 -0.15 -1.96 16 3 C 0.09 1.67 2.01 -26.73 -0.05 1.62 16 4 H 0.05 0.91 7.42 -51.93 -0.39 0.52 16 5 O -0.37 -8.57 9.41 -35.23 -0.33 -8.91 16 6 C 0.17 4.28 4.37 36.00 0.16 4.43 16 7 C -0.52 -15.42 9.99 -34.44 -0.34 -15.77 16 8 H 0.08 2.67 8.06 -52.48 -0.42 2.24 16 9 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 10 N -0.90 -27.85 13.96 55.43 0.77 -27.07 16 11 Si 0.87 21.57 27.47 -169.99 -4.67 16.90 16 12 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 13 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 14 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 15 C -0.12 -1.94 3.36 -89.81 -0.30 -2.24 16 16 C -0.13 -1.70 7.63 -25.92 -0.20 -1.90 16 17 C -0.14 -1.83 8.08 -25.92 -0.21 -2.04 16 18 C -0.13 -2.14 6.68 -25.92 -0.17 -2.32 16 19 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 20 H 0.07 1.23 7.94 -51.93 -0.41 0.81 16 21 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 23 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 24 H 0.00 0.04 5.35 -51.93 -0.28 -0.24 16 25 H 0.00 -0.03 7.05 -51.93 -0.37 -0.39 16 26 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 27 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 28 H 0.08 0.96 7.96 -51.93 -0.41 0.55 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.08 1.41 6.60 -51.92 -0.34 1.07 16 LS Contribution 266.52 15.07 4.02 4.02 Total: -1.00 -30.86 266.52 -6.81 -37.67 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: -5.59 Total: -2.52 kcal Atomic # 6 Polarization: -19.07 SS G_CDS: -1.01 Total: -20.08 kcal Atomic # 7 Polarization: -27.85 SS G_CDS: 0.77 Total: -27.07 kcal Atomic # 8 Polarization: -8.57 SS G_CDS: -0.33 Total: -8.91 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.67 Total: 16.90 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -30.86 -6.81 -37.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719694197.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.610 kcal (2) G-P(sol) polarization free energy of solvation -30.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds