Wall clock time and date at job start Mon Mar 30 2020 02:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47161 * 2 1 4 4 H 1.09005 * 109.47378 * 56.26338 * 3 2 1 5 5 O 1.42901 * 109.47317 * 296.26844 * 3 2 1 6 6 C 1.42903 * 114.00473 * 140.49299 * 5 3 2 7 7 C 1.50693 * 109.47225 * 185.28002 * 6 5 3 8 8 H 1.08007 * 120.00439 * 0.02562 * 7 6 5 9 9 C 1.37881 * 119.99990 * 180.02562 * 7 6 5 10 10 N 1.31516 * 120.00100 * 180.02562 * 9 7 6 11 11 Si 1.86801 * 119.99986 * 359.97438 * 9 7 6 12 12 H 1.48496 * 109.47090 * 90.00011 * 11 9 7 13 13 H 1.48500 * 109.47157 * 210.00297 * 11 9 7 14 14 H 1.48499 * 109.47042 * 330.00266 * 11 9 7 15 15 C 1.52998 * 109.47373 * 176.26637 * 3 2 1 16 16 C 1.53782 * 113.61618 * 277.49676 * 15 3 2 17 17 C 1.53781 * 87.08051 * 220.01797 * 16 15 3 18 18 C 1.53780 * 87.08365 * 25.43104 * 17 16 15 19 19 H 1.08997 * 109.47235 * 305.55244 * 1 2 3 20 20 H 1.08999 * 109.47266 * 65.55996 * 1 2 3 21 21 H 1.09006 * 109.47292 * 185.55627 * 1 2 3 22 22 H 1.09001 * 109.47265 * 239.99960 * 2 1 3 23 23 H 1.09002 * 109.47164 * 120.00097 * 2 1 3 24 24 H 1.09005 * 109.46724 * 65.28258 * 6 5 3 25 25 H 1.08999 * 109.46778 * 305.28154 * 6 5 3 26 26 H 0.96994 * 119.99997 * 180.02562 * 10 9 7 27 27 H 1.08998 * 112.84885 * 48.81100 * 15 3 2 28 28 H 1.08996 * 113.61114 * 334.56464 * 16 15 3 29 29 H 1.08993 * 113.61127 * 105.47253 * 16 15 3 30 30 H 1.09000 * 113.61800 * 270.88373 * 17 16 15 31 31 H 1.09004 * 113.69063 * 139.99049 * 17 16 15 32 32 H 1.08997 * 113.61645 * 220.01256 * 18 17 16 33 33 H 1.09009 * 113.61042 * 89.11261 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.6230 1.9753 0.8546 5 8 1.6366 2.0903 -1.2081 6 6 1.2270 3.4479 -1.0310 7 6 0.7034 3.9891 -2.3363 8 1 0.6849 3.3592 -3.2135 9 6 0.2481 5.2884 -2.4109 10 7 -0.2093 5.7605 -3.5500 11 14 0.2795 6.3776 -0.8936 12 1 1.5762 7.0984 -0.8285 13 1 -0.8305 7.3613 -0.9674 14 1 0.1179 5.5390 0.3212 15 6 3.5670 1.4435 0.0939 16 6 4.0961 1.2905 1.5298 17 6 5.1662 2.3321 1.1626 18 6 4.1828 2.8527 0.1011 19 1 -0.3633 0.5975 0.8361 20 1 -0.3634 0.4252 -0.9356 21 1 -0.3634 -1.0229 0.0995 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5139 0.8900 24 1 2.0790 4.0449 -0.7057 25 1 0.4413 3.4949 -0.2769 26 1 -0.5293 6.6747 -3.6025 27 1 4.0355 0.7661 -0.6200 28 1 3.3962 1.6335 2.2917 29 1 4.5035 0.3021 1.7419 30 1 6.0728 1.8971 0.7419 31 1 5.3704 3.0492 1.9577 32 1 4.6603 3.1254 -0.8400 33 1 3.5067 3.6227 0.4726 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719694197.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:58 Heat of formation + Delta-G solvation = -65.480485 kcal Electronic energy + Delta-G solvation = -13106.230456 eV Core-core repulsion = 10938.322952 eV Total energy + Delta-G solvation = -2167.907505 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.45713 -37.84710 -35.08571 -34.03004 -30.25931 -28.47285 -26.46685 -24.48691 -23.79615 -21.91095 -20.29961 -18.97961 -17.63466 -16.81475 -16.46875 -16.11219 -15.24427 -14.95532 -14.59387 -14.41720 -13.70796 -13.37750 -13.13902 -13.03770 -12.89783 -12.68803 -12.46884 -11.99458 -11.88511 -11.76520 -11.63972 -11.34036 -11.16275 -11.01992 -10.87480 -9.96953 -8.38938 -6.45694 1.29354 1.32381 1.43020 2.26645 2.93512 3.07708 3.68650 3.80396 3.88915 4.01648 4.22668 4.28445 4.41877 4.46276 4.59831 4.83078 4.84493 4.87236 4.93365 5.03310 5.06796 5.09470 5.10679 5.17284 5.26172 5.38375 5.42870 5.50427 5.62448 5.98277 6.58291 6.82453 7.19035 8.78420 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.031679 B = 0.011157 C = 0.009250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.646478 B = 2509.008034 C = 3026.238823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C 0.082 3.918 4 H 0.052 0.948 5 O -0.396 6.396 6 C 0.185 3.815 7 C -0.543 4.543 8 H 0.028 0.972 9 C 0.014 3.986 10 N -0.942 5.942 11 Si 0.950 3.050 12 H -0.258 1.258 13 H -0.271 1.271 14 H -0.248 1.248 15 C -0.130 4.130 16 C -0.119 4.119 17 C -0.130 4.130 18 C -0.151 4.151 19 H 0.050 0.950 20 H 0.030 0.970 21 H 0.074 0.926 22 H 0.061 0.939 23 H 0.100 0.900 24 H 0.012 0.988 25 H 0.002 0.998 26 H 0.273 0.727 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.050 0.950 33 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.726 -8.403 13.935 18.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.152 4.152 3 C 0.024 3.976 4 H 0.070 0.930 5 O -0.316 6.316 6 C 0.109 3.891 7 C -0.580 4.580 8 H 0.047 0.953 9 C -0.184 4.184 10 N -0.582 5.582 11 Si 0.771 3.229 12 H -0.183 1.183 13 H -0.196 1.196 14 H -0.171 1.171 15 C -0.149 4.149 16 C -0.157 4.157 17 C -0.167 4.167 18 C -0.189 4.189 19 H 0.069 0.931 20 H 0.049 0.951 21 H 0.093 0.907 22 H 0.079 0.921 23 H 0.118 0.882 24 H 0.030 0.970 25 H 0.020 0.980 26 H 0.082 0.918 27 H 0.108 0.892 28 H 0.102 0.898 29 H 0.107 0.893 30 H 0.109 0.891 31 H 0.094 0.906 32 H 0.069 0.931 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.646 -8.348 13.662 17.743 hybrid contribution -0.347 0.920 -0.139 0.993 sum 7.300 -7.428 13.523 17.068 Atomic orbital electron populations 1.21700 0.96054 1.01950 1.00952 1.21650 0.96075 0.94451 1.03047 1.22424 0.93748 0.94311 0.87106 0.92986 1.87879 1.85412 1.26194 1.32110 1.20338 0.92976 0.80586 0.95202 1.21196 1.42593 0.98104 0.96153 0.95320 1.25810 0.93681 0.98895 1.00036 1.70031 1.43186 1.17256 1.27688 0.85683 0.79204 0.78659 0.79321 1.18293 1.19632 1.17111 1.23045 0.94655 0.97890 0.99305 1.22865 0.97949 1.00372 0.94469 1.22807 0.97085 0.98719 0.98126 1.22961 0.99273 0.96954 0.99703 0.93056 0.95077 0.90736 0.92055 0.88201 0.97043 0.97988 0.91835 0.89158 0.89802 0.89330 0.89107 0.90566 0.93108 0.91756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.43 9.73 71.98 0.70 -3.73 16 2 C -0.11 -3.27 5.64 30.59 0.17 -3.10 16 3 C 0.08 2.84 2.01 30.59 0.06 2.90 16 4 H 0.05 1.78 7.42 -2.38 -0.02 1.76 16 5 O -0.40 -18.82 9.41 -148.98 -1.40 -20.22 16 6 C 0.18 9.51 4.37 71.23 0.31 9.82 16 7 C -0.54 -33.81 9.99 25.60 0.26 -33.56 16 8 H 0.03 2.01 8.06 -2.91 -0.02 1.99 16 9 C 0.01 0.82 5.47 84.66 0.46 1.29 16 10 N -0.94 -60.24 13.96 21.45 0.30 -59.94 16 11 Si 0.95 44.24 27.47 68.60 1.88 46.13 16 12 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 13 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 14 H -0.25 -10.70 6.54 99.48 0.65 -10.05 16 15 C -0.13 -3.82 3.36 -10.27 -0.03 -3.85 16 16 C -0.12 -2.54 7.63 31.12 0.24 -2.30 16 17 C -0.13 -2.87 8.08 31.12 0.25 -2.62 16 18 C -0.15 -4.70 6.68 31.12 0.21 -4.50 16 19 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 20 H 0.03 1.13 7.94 -2.39 -0.02 1.11 16 21 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 22 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 23 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 24 H 0.01 0.59 5.35 -2.38 -0.01 0.57 16 25 H 0.00 0.12 7.05 -2.39 -0.02 0.11 16 26 H 0.27 15.97 8.31 -92.71 -0.77 15.20 16 27 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 28 H 0.08 1.72 7.96 -2.39 -0.02 1.70 16 29 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 32 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.06 2.19 6.60 -2.38 -0.02 2.17 16 Total: -1.00 -69.53 266.52 4.40 -65.13 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: 0.99 Total: 8.55 kcal Atomic # 6 Polarization: -42.28 SS G_CDS: 2.63 Total: -39.65 kcal Atomic # 7 Polarization: -60.24 SS G_CDS: 0.30 Total: -59.94 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: -1.40 Total: -20.22 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 1.88 Total: 46.13 kcal Total: -69.53 4.40 -65.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719694197.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.352 kcal (2) G-P(sol) polarization free energy of solvation -69.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds