Wall clock time and date at job start Mon Mar 30 2020 02:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53007 * 109.46898 * 2 1 4 4 H 1.08995 * 109.46715 * 305.31738 * 3 2 1 5 5 O 1.42901 * 109.47161 * 65.32305 * 3 2 1 6 6 C 1.42892 * 113.99629 * 259.54024 * 5 3 2 7 7 C 1.50706 * 109.47310 * 178.94457 * 6 5 3 8 8 H 1.08002 * 119.99188 * 359.97438 * 7 6 5 9 9 C 1.37873 * 120.00540 * 180.02562 * 7 6 5 10 10 N 1.31514 * 119.99838 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00376 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47084 * 89.99384 * 11 9 7 13 13 H 1.48490 * 109.47320 * 209.99883 * 11 9 7 14 14 H 1.48509 * 109.46765 * 329.99807 * 11 9 7 15 15 C 1.53001 * 109.46851 * 185.32275 * 3 2 1 16 16 C 1.53781 * 113.61262 * 279.13448 * 15 3 2 17 17 C 1.53955 * 87.02115 * 220.04935 * 16 15 3 18 18 C 1.53781 * 87.11084 * 25.36302 * 17 16 15 19 19 H 1.09003 * 109.47645 * 57.73997 * 1 2 3 20 20 H 1.09000 * 109.47236 * 177.74061 * 1 2 3 21 21 H 1.09001 * 109.47178 * 297.74145 * 1 2 3 22 22 H 1.09000 * 109.47108 * 240.00267 * 2 1 3 23 23 H 1.09001 * 109.47178 * 119.99634 * 2 1 3 24 24 H 1.09002 * 109.47521 * 298.94296 * 6 5 3 25 25 H 1.08998 * 109.47479 * 58.94378 * 6 5 3 26 26 H 0.96999 * 120.00469 * 180.02562 * 10 9 7 27 27 H 1.08999 * 112.85192 * 50.32855 * 15 3 2 28 28 H 1.08997 * 113.61943 * 334.56973 * 16 15 3 29 29 H 1.09006 * 113.61457 * 105.47151 * 16 15 3 30 30 H 1.09003 * 113.53637 * 270.81144 * 17 16 15 31 31 H 1.08995 * 113.74397 * 139.94208 * 17 16 15 32 32 H 1.08992 * 113.61401 * 220.09085 * 18 17 16 33 33 H 1.09002 * 113.61507 * 89.18292 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6008 1.9831 -0.8385 5 8 1.6683 2.0792 1.2242 6 6 0.5230 2.9265 1.1143 7 6 0.2073 3.5219 2.4623 8 1 0.8200 3.2772 3.3175 9 6 -0.8640 4.3780 2.6041 10 7 -1.6103 4.6755 1.5629 11 14 -1.2548 5.1165 4.2748 12 1 -0.5261 6.4010 4.4309 13 1 -2.7159 5.3605 4.3787 14 1 -0.8329 4.1751 5.3431 15 6 3.5640 1.4446 -0.1338 16 6 4.2990 1.1789 1.1906 17 6 5.3095 2.2548 0.7528 18 6 4.1829 2.8522 -0.1067 19 1 -0.3634 0.5485 -0.8690 20 1 -0.3634 -1.0269 -0.0405 21 1 -0.3633 0.4784 0.9095 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 0.7296 3.7264 0.4033 25 1 -0.3291 2.3425 0.7666 26 1 -2.3638 5.2782 1.6625 27 1 3.9172 0.8282 -0.9605 28 1 3.7222 1.4550 2.0732 29 1 4.7271 0.1787 1.2594 30 1 6.1410 1.8593 0.1694 31 1 5.6337 2.9079 1.5629 32 1 4.5173 3.2010 -1.0836 33 1 3.5741 3.5867 0.4206 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719694199.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:59 Heat of formation + Delta-G solvation = -50.703383 kcal Electronic energy + Delta-G solvation = -13130.673884 eV Core-core repulsion = 10963.407163 eV Total energy + Delta-G solvation = -2167.266721 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.96274 -36.15953 -32.98528 -32.11082 -28.13502 -26.46908 -25.18122 -22.98792 -22.20171 -20.44483 -18.77950 -16.42774 -15.73228 -15.34240 -14.69470 -14.32974 -14.13644 -13.17327 -12.52807 -12.23841 -12.12320 -11.87882 -11.75512 -11.33164 -11.05887 -10.94195 -10.87372 -10.64786 -10.27559 -10.13958 -10.05458 -9.74300 -9.46324 -9.01104 -8.71536 -8.00814 -6.08537 -4.09620 3.30903 3.36165 3.41239 4.36854 4.86340 5.03995 5.16244 5.23012 5.27894 5.30763 5.62953 5.69745 5.73444 5.97930 6.02883 6.11806 6.23514 6.28740 6.36994 6.38818 6.47353 6.51718 6.69237 6.73220 6.88831 7.05473 7.24321 7.51037 7.82809 8.21164 8.66536 9.05520 9.55215 11.02773 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.035049 B = 0.009982 C = 0.008554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.691204 B = 2804.511930 C = 3272.502363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.133 4.133 3 C 0.096 3.904 4 H 0.051 0.949 5 O -0.382 6.382 6 C 0.191 3.809 7 C -0.512 4.512 8 H 0.065 0.935 9 C 0.056 3.944 10 N -0.898 5.898 11 Si 0.904 3.096 12 H -0.279 1.279 13 H -0.286 1.286 14 H -0.272 1.272 15 C -0.115 4.115 16 C -0.125 4.125 17 C -0.144 4.144 18 C -0.133 4.133 19 H 0.048 0.952 20 H 0.043 0.957 21 H 0.072 0.928 22 H 0.055 0.945 23 H 0.064 0.936 24 H 0.000 1.000 25 H 0.013 0.987 26 H 0.263 0.737 27 H 0.085 0.915 28 H 0.097 0.903 29 H 0.053 0.947 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.306 -6.300 -3.584 11.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.171 4.171 3 C 0.037 3.963 4 H 0.069 0.931 5 O -0.302 6.302 6 C 0.117 3.883 7 C -0.551 4.551 8 H 0.083 0.917 9 C -0.145 4.145 10 N -0.538 5.538 11 Si 0.732 3.268 12 H -0.205 1.205 13 H -0.211 1.211 14 H -0.197 1.197 15 C -0.133 4.133 16 C -0.163 4.163 17 C -0.182 4.182 18 C -0.170 4.170 19 H 0.067 0.933 20 H 0.062 0.938 21 H 0.091 0.909 22 H 0.073 0.927 23 H 0.082 0.918 24 H 0.018 0.982 25 H 0.030 0.970 26 H 0.073 0.927 27 H 0.103 0.897 28 H 0.116 0.884 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 8.238 -6.217 -3.457 10.885 hybrid contribution -0.511 0.503 0.445 0.844 sum 7.727 -5.714 -3.013 10.071 Atomic orbital electron populations 1.21848 0.95775 1.00483 1.03071 1.21907 0.96416 0.97671 1.01135 1.21712 0.92920 0.92400 0.89269 0.93131 1.87847 1.49769 1.63117 1.29438 1.20335 0.82652 0.87844 0.97462 1.21071 1.12561 1.26677 0.94765 0.91721 1.24929 0.95808 0.96401 0.97346 1.69961 1.18283 1.35966 1.29564 0.86389 0.77347 0.79457 0.83621 1.20539 1.21137 1.19673 1.22729 0.94690 0.97658 0.98272 1.22824 0.97081 0.97541 0.98808 1.22816 0.96549 0.99009 0.99783 1.22880 0.97601 0.97100 0.99435 0.93289 0.93782 0.90910 0.92668 0.91750 0.98181 0.96959 0.92746 0.89653 0.88407 0.92784 0.91238 0.91864 0.92595 0.88978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 8.92 37.15 0.33 -2.37 16 2 C -0.13 -2.22 5.62 -26.73 -0.15 -2.37 16 3 C 0.10 1.80 2.28 -26.73 -0.06 1.74 16 4 H 0.05 0.99 7.70 -51.93 -0.40 0.59 16 5 O -0.38 -8.92 7.85 -35.23 -0.28 -9.19 16 6 C 0.19 5.15 5.06 36.01 0.18 5.33 16 7 C -0.51 -14.95 9.43 -34.44 -0.32 -15.28 16 8 H 0.06 1.88 7.81 -52.49 -0.41 1.47 16 9 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 10 N -0.90 -26.85 13.29 55.43 0.74 -26.11 16 11 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 14 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 15 C -0.12 -1.83 3.58 -89.80 -0.32 -2.15 16 16 C -0.13 -1.95 7.49 -25.83 -0.19 -2.14 16 17 C -0.14 -2.04 8.09 -25.83 -0.21 -2.25 16 18 C -0.13 -2.12 7.54 -25.92 -0.20 -2.31 16 19 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 20 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 21 H 0.07 1.50 6.35 -51.93 -0.33 1.17 16 22 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 24 H 0.00 0.01 8.13 -51.93 -0.42 -0.41 16 25 H 0.01 0.35 5.86 -51.93 -0.30 0.04 16 26 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 27 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 28 H 0.10 1.79 7.03 -51.93 -0.36 1.42 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.09 1.74 7.72 -51.93 -0.40 1.34 16 LS Contribution 267.64 15.07 4.03 4.03 Total: -1.00 -29.60 267.64 -7.14 -36.73 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: -5.57 Total: -2.07 kcal Atomic # 6 Polarization: -19.24 SS G_CDS: -1.04 Total: -20.28 kcal Atomic # 7 Polarization: -26.85 SS G_CDS: 0.74 Total: -26.11 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: -0.28 Total: -9.19 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -29.60 -7.14 -36.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719694199.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.970 kcal (2) G-P(sol) polarization free energy of solvation -29.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds