Wall clock time and date at job start Mon Mar 30 2020 02:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53007 * 109.46898 * 2 1 4 4 H 1.08995 * 109.46715 * 305.31738 * 3 2 1 5 5 O 1.42901 * 109.47161 * 65.32305 * 3 2 1 6 6 C 1.42892 * 113.99629 * 259.54024 * 5 3 2 7 7 C 1.50706 * 109.47310 * 178.94457 * 6 5 3 8 8 H 1.08002 * 119.99188 * 359.97438 * 7 6 5 9 9 C 1.37873 * 120.00540 * 180.02562 * 7 6 5 10 10 N 1.31514 * 119.99838 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00376 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47084 * 89.99384 * 11 9 7 13 13 H 1.48490 * 109.47320 * 209.99883 * 11 9 7 14 14 H 1.48509 * 109.46765 * 329.99807 * 11 9 7 15 15 C 1.53001 * 109.46851 * 185.32275 * 3 2 1 16 16 C 1.53781 * 113.61262 * 279.13448 * 15 3 2 17 17 C 1.53955 * 87.02115 * 220.04935 * 16 15 3 18 18 C 1.53781 * 87.11084 * 25.36302 * 17 16 15 19 19 H 1.09003 * 109.47645 * 57.73997 * 1 2 3 20 20 H 1.09000 * 109.47236 * 177.74061 * 1 2 3 21 21 H 1.09001 * 109.47178 * 297.74145 * 1 2 3 22 22 H 1.09000 * 109.47108 * 240.00267 * 2 1 3 23 23 H 1.09001 * 109.47178 * 119.99634 * 2 1 3 24 24 H 1.09002 * 109.47521 * 298.94296 * 6 5 3 25 25 H 1.08998 * 109.47479 * 58.94378 * 6 5 3 26 26 H 0.96999 * 120.00469 * 180.02562 * 10 9 7 27 27 H 1.08999 * 112.85192 * 50.32855 * 15 3 2 28 28 H 1.08997 * 113.61943 * 334.56973 * 16 15 3 29 29 H 1.09006 * 113.61457 * 105.47151 * 16 15 3 30 30 H 1.09003 * 113.53637 * 270.81144 * 17 16 15 31 31 H 1.08995 * 113.74397 * 139.94208 * 17 16 15 32 32 H 1.08992 * 113.61401 * 220.09085 * 18 17 16 33 33 H 1.09002 * 113.61507 * 89.18292 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6008 1.9831 -0.8385 5 8 1.6683 2.0792 1.2242 6 6 0.5230 2.9265 1.1143 7 6 0.2073 3.5219 2.4623 8 1 0.8200 3.2772 3.3175 9 6 -0.8640 4.3780 2.6041 10 7 -1.6103 4.6755 1.5629 11 14 -1.2548 5.1165 4.2748 12 1 -0.5261 6.4010 4.4309 13 1 -2.7159 5.3605 4.3787 14 1 -0.8329 4.1751 5.3431 15 6 3.5640 1.4446 -0.1338 16 6 4.2990 1.1789 1.1906 17 6 5.3095 2.2548 0.7528 18 6 4.1829 2.8522 -0.1067 19 1 -0.3634 0.5485 -0.8690 20 1 -0.3634 -1.0269 -0.0405 21 1 -0.3633 0.4784 0.9095 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 0.7296 3.7264 0.4033 25 1 -0.3291 2.3425 0.7666 26 1 -2.3638 5.2782 1.6625 27 1 3.9172 0.8282 -0.9605 28 1 3.7222 1.4550 2.0732 29 1 4.7271 0.1787 1.2594 30 1 6.1410 1.8593 0.1694 31 1 5.6337 2.9079 1.5629 32 1 4.5173 3.2010 -1.0836 33 1 3.5741 3.5867 0.4206 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719694199.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:59 Heat of formation + Delta-G solvation = -67.737606 kcal Electronic energy + Delta-G solvation = -13131.412543 eV Core-core repulsion = 10963.407163 eV Total energy + Delta-G solvation = -2168.005381 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.38275 -37.78397 -35.02286 -33.81774 -29.93853 -28.27442 -26.45632 -24.58420 -24.07684 -21.89985 -20.09112 -18.59477 -17.47344 -16.86340 -16.43130 -15.88932 -15.76506 -14.81842 -14.31861 -13.92165 -13.57843 -13.35502 -13.11379 -12.96074 -12.82967 -12.75384 -12.50418 -12.23282 -12.09648 -11.71640 -11.40379 -11.13801 -11.10405 -10.85719 -10.72182 -9.91525 -8.31200 -6.42486 1.37647 1.40187 1.52092 2.33911 3.02322 3.25647 3.70810 3.90023 3.93826 4.05112 4.27612 4.33655 4.34255 4.59159 4.82239 4.84422 4.89510 4.96550 5.02140 5.03223 5.07520 5.13862 5.19433 5.28021 5.32868 5.45993 5.46365 5.57781 5.79285 6.01596 6.60546 6.91697 7.29897 8.80788 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.035049 B = 0.009982 C = 0.008554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.691204 B = 2804.511930 C = 3272.502363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C 0.082 3.918 4 H 0.037 0.963 5 O -0.392 6.392 6 C 0.211 3.789 7 C -0.544 4.544 8 H 0.058 0.942 9 C 0.006 3.994 10 N -0.930 5.930 11 Si 0.978 3.022 12 H -0.269 1.269 13 H -0.274 1.274 14 H -0.265 1.265 15 C -0.110 4.110 16 C -0.128 4.128 17 C -0.130 4.130 18 C -0.143 4.143 19 H 0.043 0.957 20 H 0.072 0.928 21 H 0.031 0.969 22 H 0.093 0.907 23 H 0.065 0.935 24 H -0.028 1.028 25 H -0.001 1.001 26 H 0.269 0.731 27 H 0.122 0.878 28 H 0.061 0.939 29 H 0.080 0.920 30 H 0.103 0.897 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.505 -7.282 -3.582 12.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C 0.024 3.976 4 H 0.055 0.945 5 O -0.312 6.312 6 C 0.136 3.864 7 C -0.582 4.582 8 H 0.076 0.924 9 C -0.192 4.192 10 N -0.570 5.570 11 Si 0.801 3.199 12 H -0.194 1.194 13 H -0.199 1.199 14 H -0.189 1.189 15 C -0.128 4.128 16 C -0.165 4.165 17 C -0.167 4.167 18 C -0.180 4.180 19 H 0.062 0.938 20 H 0.091 0.909 21 H 0.050 0.950 22 H 0.111 0.889 23 H 0.084 0.916 24 H -0.011 1.011 25 H 0.017 0.983 26 H 0.078 0.922 27 H 0.140 0.860 28 H 0.079 0.921 29 H 0.098 0.902 30 H 0.121 0.879 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 9.451 -7.211 -3.466 12.383 hybrid contribution -0.868 0.774 0.368 1.220 sum 8.583 -6.437 -3.098 11.167 Atomic orbital electron populations 1.21806 0.96784 1.01693 1.00700 1.21882 0.95470 0.96126 1.02966 1.22104 0.95391 0.93247 0.86886 0.94522 1.87816 1.48305 1.62868 1.32200 1.19883 0.83393 0.87241 0.95916 1.21397 1.13403 1.27986 0.95413 0.92406 1.25910 0.95179 0.96350 1.01756 1.70070 1.18655 1.36304 1.31923 0.85258 0.77640 0.78720 0.78269 1.19439 1.19900 1.18939 1.22840 0.92100 0.98124 0.99759 1.22752 0.97250 0.99425 0.97082 1.22807 0.96503 0.97929 0.99438 1.22850 0.98231 0.96490 1.00452 0.93821 0.90868 0.94959 0.88869 0.91603 1.01067 0.98349 0.92186 0.85970 0.92068 0.90180 0.87880 0.92215 0.90607 0.93215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.32 8.92 71.98 0.64 -4.68 16 2 C -0.13 -4.03 5.62 30.59 0.17 -3.86 16 3 C 0.08 3.08 2.28 30.60 0.07 3.15 16 4 H 0.04 1.47 7.70 -2.39 -0.02 1.45 16 5 O -0.39 -19.10 7.85 -148.98 -1.17 -20.27 16 6 C 0.21 11.98 5.06 71.24 0.36 12.34 16 7 C -0.54 -32.95 9.43 25.60 0.24 -32.71 16 8 H 0.06 3.48 7.81 -2.91 -0.02 3.46 16 9 C 0.01 0.37 5.46 84.65 0.46 0.84 16 10 N -0.93 -56.77 13.29 21.45 0.28 -56.49 16 11 Si 0.98 45.23 29.54 68.60 2.03 47.26 16 12 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 13 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 14 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 15 C -0.11 -3.30 3.58 -10.27 -0.04 -3.34 16 16 C -0.13 -3.77 7.49 31.18 0.23 -3.53 16 17 C -0.13 -3.37 8.09 31.18 0.25 -3.12 16 18 C -0.14 -4.45 7.54 31.12 0.23 -4.22 16 19 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 20 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 21 H 0.03 1.36 6.35 -2.39 -0.02 1.35 16 22 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 23 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 24 H -0.03 -1.73 8.13 -2.39 -0.02 -1.75 16 25 H 0.00 -0.07 5.86 -2.39 -0.01 -0.08 16 26 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 27 H 0.12 2.83 8.14 -2.39 -0.02 2.82 16 28 H 0.06 2.26 7.03 -2.39 -0.02 2.25 16 29 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 30 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.05 1.96 7.72 -2.39 -0.02 1.94 16 Total: -1.00 -65.92 267.64 4.82 -61.10 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: 1.05 Total: 7.53 kcal Atomic # 6 Polarization: -41.76 SS G_CDS: 2.63 Total: -39.13 kcal Atomic # 7 Polarization: -56.77 SS G_CDS: 0.28 Total: -56.49 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: -1.17 Total: -20.27 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -65.92 4.82 -61.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719694199.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.640 kcal (2) G-P(sol) polarization free energy of solvation -65.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds