Wall clock time and date at job start Mon Mar 30 2020 02:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86794 * 120.00090 * 2 1 4 4 H 1.48495 * 109.47254 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47191 * 300.00204 * 3 2 1 6 6 H 1.48497 * 109.47548 * 59.99906 * 3 2 1 7 7 C 1.37875 * 120.00113 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00314 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99953 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.47243 * 179.97438 * 9 7 2 11 11 C 1.46901 * 110.99836 * 179.97438 * 10 9 7 12 12 H 1.09001 * 110.54172 * 323.84544 * 11 10 9 13 13 C 1.54266 * 110.48271 * 86.45665 * 11 10 9 14 14 C 1.53872 * 106.60044 * 142.28511 * 13 11 10 15 15 C 1.54266 * 106.59640 * 359.97438 * 14 13 11 16 16 H 1.09001 * 110.48620 * 95.07012 * 15 14 13 17 17 C 1.53001 * 110.48622 * 217.70911 * 15 14 13 18 18 N 1.46898 * 109.47179 * 293.54728 * 17 15 14 19 19 C 1.54887 * 104.19888 * 336.38805 * 15 14 13 20 20 H 0.96996 * 120.00169 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47156 * 59.99522 * 9 7 2 22 22 H 1.09007 * 109.46849 * 299.99768 * 9 7 2 23 23 H 1.00895 * 110.99995 * 303.95486 * 10 9 7 24 24 H 1.09002 * 110.02957 * 23.00122 * 13 11 10 25 25 H 1.09000 * 110.07144 * 261.59495 * 13 11 10 26 26 H 1.09003 * 110.03622 * 240.71485 * 14 13 11 27 27 H 1.09005 * 110.03465 * 119.28158 * 14 13 11 28 28 H 1.08996 * 109.47170 * 53.55130 * 17 15 14 29 29 H 1.09001 * 109.47002 * 173.54712 * 17 15 14 30 30 H 1.00899 * 111.00063 * 56.04805 * 18 17 15 31 31 H 1.00907 * 111.00156 * 179.97438 * 18 17 15 32 32 H 1.09001 * 110.75744 * 156.25305 * 19 15 14 33 33 H 1.09000 * 110.75698 * 279.63123 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2056 -3.6157 -0.0018 11 6 1.5053 -4.9071 -0.0012 12 1 0.5991 -4.8504 0.6020 13 6 1.1678 -5.3388 -1.4433 14 6 1.3646 -6.8637 -1.5031 15 6 1.8155 -7.3053 -0.0954 16 1 0.9597 -7.6361 0.4930 17 6 2.8620 -8.4172 -0.1927 18 7 2.2423 -9.6253 -0.7534 19 6 2.4372 -6.0283 0.5224 20 1 -0.4850 0.8400 0.0004 21 1 0.6240 -2.5567 -0.8902 22 1 0.6247 -2.5571 0.8898 23 1 2.8399 -3.5483 -0.7835 24 1 1.8399 -4.8476 -2.1470 25 1 0.1335 -5.0863 -1.6770 26 1 2.1322 -7.1127 -2.2359 27 1 0.4256 -7.3514 -1.7649 28 1 3.6773 -8.0933 -0.8396 29 1 3.2522 -8.6368 0.8012 30 1 1.8162 -9.4315 -1.6472 31 1 2.9137 -10.3748 -0.8282 32 1 2.4119 -6.0742 1.6112 33 1 3.4564 -5.8827 0.1644 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724031513.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:21 Heat of formation + Delta-G solvation = -24.269341 kcal Electronic energy + Delta-G solvation = -12618.743043 eV Core-core repulsion = 10484.915339 eV Total energy + Delta-G solvation = -2133.827704 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.60141 -35.17201 -33.26158 -31.75533 -28.75242 -27.76711 -25.27533 -23.25426 -21.62083 -20.01517 -19.30472 -16.38292 -16.19818 -15.64209 -14.83564 -14.41982 -14.16803 -13.40957 -13.13285 -12.80786 -12.67013 -12.28024 -11.51952 -11.39126 -11.04929 -10.73266 -10.64227 -10.54283 -10.50051 -10.36177 -10.14229 -9.80760 -9.11552 -8.82280 -8.47126 -7.20808 -6.01589 -4.03439 3.31788 3.38947 3.44184 4.40163 4.46992 4.80402 4.86231 5.06745 5.34253 5.41320 5.48260 5.51669 5.69299 5.81873 5.91250 5.92893 6.08518 6.12651 6.22830 6.31996 6.56401 6.59274 6.74162 7.01292 7.28622 7.31063 7.47291 7.81890 8.16283 8.44439 8.66430 9.06646 9.61573 11.09571 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.093320 B = 0.006080 C = 0.005932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 299.971477 B = 4604.256381 C = 4719.301446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.514 4.514 8 H 0.062 0.938 9 C 0.193 3.807 10 N -0.683 5.683 11 C 0.085 3.915 12 H 0.075 0.925 13 C -0.153 4.153 14 C -0.115 4.115 15 C -0.094 4.094 16 H 0.079 0.921 17 C 0.069 3.931 18 N -0.853 5.853 19 C -0.105 4.105 20 H 0.260 0.740 21 H -0.013 1.013 22 H 0.027 0.973 23 H 0.328 0.672 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.054 0.946 27 H 0.058 0.942 28 H 0.026 0.974 29 H 0.070 0.930 30 H 0.339 0.661 31 H 0.337 0.663 32 H 0.065 0.935 33 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.016 -14.441 -2.684 15.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.552 4.552 8 H 0.080 0.920 9 C 0.067 3.933 10 N -0.312 5.312 11 C -0.026 4.026 12 H 0.093 0.907 13 C -0.192 4.192 14 C -0.153 4.153 15 C -0.113 4.113 16 H 0.098 0.902 17 C -0.061 4.061 18 N -0.382 5.382 19 C -0.144 4.144 20 H 0.070 0.930 21 H 0.004 0.996 22 H 0.045 0.955 23 H 0.146 0.854 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.044 0.956 29 H 0.088 0.912 30 H 0.152 0.848 31 H 0.148 0.852 32 H 0.084 0.916 33 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.485 -14.255 -1.337 14.735 hybrid contribution 0.651 1.060 -1.771 2.164 sum 4.136 -13.195 -3.108 14.173 Atomic orbital electron populations 1.69973 1.06088 1.26635 1.51094 1.24992 0.94865 0.99363 0.95386 0.86438 0.80069 0.83390 0.77491 1.19668 1.21124 1.20986 1.21255 0.93546 0.90354 1.50090 0.91971 1.19570 0.90656 0.87404 0.95704 1.60679 1.20745 1.01103 1.48710 1.22372 0.96215 0.90464 0.93588 0.90671 1.22919 1.01685 0.95138 0.99480 1.22122 1.00389 0.96271 0.96531 1.22035 0.98168 0.94293 0.96802 0.90225 1.21839 0.95108 0.89783 0.99392 1.58753 1.37855 1.09072 1.32539 1.22495 0.99211 0.92681 0.99988 0.92996 0.99562 0.95534 0.85444 0.92019 0.92190 0.92765 0.92269 0.95569 0.91150 0.84822 0.85154 0.91603 0.91489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.19 13.29 55.43 0.74 -26.46 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 7 C -0.51 -14.80 9.32 -34.44 -0.32 -15.12 16 8 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 9 C 0.19 5.16 5.29 -4.97 -0.03 5.13 16 10 N -0.68 -14.90 6.33 -106.21 -0.67 -15.57 16 11 C 0.09 1.53 3.16 -66.04 -0.21 1.32 16 12 H 0.08 1.45 7.88 -51.93 -0.41 1.04 16 13 C -0.15 -2.44 6.42 -25.61 -0.16 -2.60 16 14 C -0.11 -1.47 5.54 -25.61 -0.14 -1.61 16 15 C -0.09 -1.18 3.12 -88.96 -0.28 -1.46 16 16 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 17 C 0.07 0.75 6.16 -3.82 -0.02 0.73 16 18 N -0.85 -8.26 9.62 -10.37 -0.10 -8.36 16 19 C -0.10 -1.55 6.00 -24.72 -0.15 -1.70 16 20 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 21 H -0.01 -0.38 8.12 -51.93 -0.42 -0.80 16 22 H 0.03 0.77 8.08 -51.92 -0.42 0.35 16 23 H 0.33 6.87 8.14 -39.29 -0.32 6.55 16 24 H 0.06 1.01 7.58 -51.93 -0.39 0.62 16 25 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 26 H 0.05 0.64 7.77 -51.93 -0.40 0.24 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.03 0.28 8.05 -51.93 -0.42 -0.14 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.34 3.05 8.19 -39.29 -0.32 2.73 16 31 H 0.34 2.60 9.08 -39.29 -0.36 2.25 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.07 0.99 8.06 -51.93 -0.42 0.57 16 LS Contribution 268.33 15.07 4.04 4.04 Total: -1.00 -30.13 268.33 -7.96 -38.09 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -5.54 Total: 5.19 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: -1.41 Total: -13.81 kcal Atomic # 7 Polarization: -50.36 SS G_CDS: -0.04 Total: -50.39 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -30.13 -7.96 -38.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724031513.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.820 kcal (2) G-P(sol) polarization free energy of solvation -30.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds