Wall clock time and date at job start Mon Mar 30 2020 02:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86794 * 120.00090 * 2 1 4 4 H 1.48495 * 109.47254 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47191 * 300.00204 * 3 2 1 6 6 H 1.48497 * 109.47548 * 59.99906 * 3 2 1 7 7 C 1.37875 * 120.00113 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00314 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99953 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.47243 * 179.97438 * 9 7 2 11 11 C 1.46901 * 110.99836 * 179.97438 * 10 9 7 12 12 H 1.09001 * 110.54172 * 323.84544 * 11 10 9 13 13 C 1.54266 * 110.48271 * 86.45665 * 11 10 9 14 14 C 1.53872 * 106.60044 * 142.28511 * 13 11 10 15 15 C 1.54266 * 106.59640 * 359.97438 * 14 13 11 16 16 H 1.09001 * 110.48620 * 95.07012 * 15 14 13 17 17 C 1.53001 * 110.48622 * 217.70911 * 15 14 13 18 18 N 1.46898 * 109.47179 * 293.54728 * 17 15 14 19 19 C 1.54887 * 104.19888 * 336.38805 * 15 14 13 20 20 H 0.96996 * 120.00169 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47156 * 59.99522 * 9 7 2 22 22 H 1.09007 * 109.46849 * 299.99768 * 9 7 2 23 23 H 1.00895 * 110.99995 * 303.95486 * 10 9 7 24 24 H 1.09002 * 110.02957 * 23.00122 * 13 11 10 25 25 H 1.09000 * 110.07144 * 261.59495 * 13 11 10 26 26 H 1.09003 * 110.03622 * 240.71485 * 14 13 11 27 27 H 1.09005 * 110.03465 * 119.28158 * 14 13 11 28 28 H 1.08996 * 109.47170 * 53.55130 * 17 15 14 29 29 H 1.09001 * 109.47002 * 173.54712 * 17 15 14 30 30 H 1.00899 * 111.00063 * 56.04805 * 18 17 15 31 31 H 1.00907 * 111.00156 * 179.97438 * 18 17 15 32 32 H 1.09001 * 110.75744 * 156.25305 * 19 15 14 33 33 H 1.09000 * 110.75698 * 279.63123 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2056 -3.6157 -0.0018 11 6 1.5053 -4.9071 -0.0012 12 1 0.5991 -4.8504 0.6020 13 6 1.1678 -5.3388 -1.4433 14 6 1.3646 -6.8637 -1.5031 15 6 1.8155 -7.3053 -0.0954 16 1 0.9597 -7.6361 0.4930 17 6 2.8620 -8.4172 -0.1927 18 7 2.2423 -9.6253 -0.7534 19 6 2.4372 -6.0283 0.5224 20 1 -0.4850 0.8400 0.0004 21 1 0.6240 -2.5567 -0.8902 22 1 0.6247 -2.5571 0.8898 23 1 2.8399 -3.5483 -0.7835 24 1 1.8399 -4.8476 -2.1470 25 1 0.1335 -5.0863 -1.6770 26 1 2.1322 -7.1127 -2.2359 27 1 0.4256 -7.3514 -1.7649 28 1 3.6773 -8.0933 -0.8396 29 1 3.2522 -8.6368 0.8012 30 1 1.8162 -9.4315 -1.6472 31 1 2.9137 -10.3748 -0.8282 32 1 2.4119 -6.0742 1.6112 33 1 3.4564 -5.8827 0.1644 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724031513.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:21 Heat of formation + Delta-G solvation = -46.849313 kcal Electronic energy + Delta-G solvation = -12619.722185 eV Core-core repulsion = 10484.915339 eV Total energy + Delta-G solvation = -2134.806845 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.86743 -36.62635 -34.94654 -33.44939 -29.90842 -29.46656 -27.00587 -24.31716 -23.67000 -21.40378 -20.45379 -18.53015 -17.27011 -16.79767 -16.57464 -15.79016 -15.58614 -14.96538 -14.46977 -14.35218 -13.89692 -13.77175 -13.26979 -13.14490 -12.83130 -12.47723 -12.22953 -11.90586 -11.87090 -11.58540 -11.55760 -11.39102 -11.14483 -10.68239 -9.56608 -9.04208 -8.23609 -6.35363 1.40439 1.41388 1.55459 2.39436 3.09541 3.38058 3.70647 3.74376 3.88307 4.11585 4.34125 4.41605 4.53319 4.62163 4.73329 4.80274 4.84825 4.98960 5.04861 5.09852 5.14851 5.24682 5.32160 5.39843 5.52763 5.62680 6.02351 6.27849 6.47442 6.65072 6.74213 6.90282 7.36122 8.88305 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.093320 B = 0.006080 C = 0.005932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 299.971477 B = 4604.256381 C = 4719.301446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.000 4.000 3 Si 0.975 3.025 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.537 4.537 8 H 0.065 0.935 9 C 0.210 3.790 10 N -0.682 5.682 11 C 0.075 3.925 12 H 0.054 0.946 13 C -0.149 4.149 14 C -0.104 4.104 15 C -0.085 4.085 16 H 0.074 0.926 17 C 0.075 3.925 18 N -0.858 5.858 19 C -0.095 4.095 20 H 0.265 0.735 21 H -0.039 1.039 22 H -0.005 1.005 23 H 0.335 0.665 24 H 0.057 0.943 25 H 0.045 0.955 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.033 0.967 29 H 0.073 0.927 30 H 0.345 0.655 31 H 0.350 0.650 32 H 0.064 0.936 33 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.426 -15.150 -3.138 16.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.198 4.198 3 Si 0.799 3.201 4 H -0.186 1.186 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.575 4.575 8 H 0.083 0.917 9 C 0.082 3.918 10 N -0.312 5.312 11 C -0.036 4.036 12 H 0.072 0.928 13 C -0.189 4.189 14 C -0.142 4.142 15 C -0.104 4.104 16 H 0.092 0.908 17 C -0.055 4.055 18 N -0.389 5.389 19 C -0.134 4.134 20 H 0.074 0.926 21 H -0.021 1.021 22 H 0.013 0.987 23 H 0.153 0.847 24 H 0.076 0.924 25 H 0.064 0.936 26 H 0.091 0.909 27 H 0.089 0.911 28 H 0.051 0.949 29 H 0.091 0.909 30 H 0.158 0.842 31 H 0.163 0.837 32 H 0.083 0.917 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.907 -15.003 -1.797 15.887 hybrid contribution 0.168 1.235 -1.618 2.042 sum 5.075 -13.768 -3.416 15.066 Atomic orbital electron populations 1.70103 1.07896 1.27973 1.51597 1.25984 0.95791 1.03499 0.94504 0.85249 0.78923 0.78113 0.77784 1.18576 1.20221 1.20347 1.21609 0.93839 0.91508 1.50557 0.91722 1.19186 0.90668 0.89032 0.92907 1.60587 1.20076 1.01392 1.49121 1.22507 0.96201 0.89715 0.95133 0.92779 1.22828 1.00643 0.97833 0.97596 1.22059 1.01669 0.93364 0.97152 1.21935 0.98404 0.93859 0.96192 0.90798 1.21714 0.94401 0.89490 0.99933 1.58703 1.38336 1.08928 1.32964 1.22400 0.98713 0.92273 1.00012 0.92602 1.02150 0.98737 0.84743 0.92430 0.93619 0.90949 0.91121 0.94902 0.90897 0.84247 0.83703 0.91710 0.90892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.61 13.29 21.45 0.28 -57.33 16 2 C 0.00 0.01 5.46 84.65 0.46 0.48 16 3 Si 0.98 44.86 29.54 68.60 2.03 46.88 16 4 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 5 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 6 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 7 C -0.54 -31.39 9.32 25.60 0.24 -31.15 16 8 H 0.06 3.66 7.81 -2.91 -0.02 3.64 16 9 C 0.21 11.64 5.29 85.56 0.45 12.09 16 10 N -0.68 -30.34 6.33 -489.95 -3.10 -33.44 16 11 C 0.08 2.74 3.16 46.00 0.15 2.89 16 12 H 0.05 2.18 7.88 -2.39 -0.02 2.16 16 13 C -0.15 -4.75 6.42 31.32 0.20 -4.55 16 14 C -0.10 -2.46 5.54 31.32 0.17 -2.28 16 15 C -0.08 -1.97 3.12 -9.72 -0.03 -2.00 16 16 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 17 C 0.08 1.42 6.16 86.30 0.53 1.95 16 18 N -0.86 -14.13 9.62 -186.72 -1.80 -15.93 16 19 C -0.10 -2.72 6.00 31.89 0.19 -2.53 16 20 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 21 H -0.04 -2.32 8.12 -2.39 -0.02 -2.34 16 22 H -0.01 -0.33 8.08 -2.38 -0.02 -0.35 16 23 H 0.33 14.08 8.14 -89.70 -0.73 13.35 16 24 H 0.06 1.87 7.58 -2.39 -0.02 1.85 16 25 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.07 1.48 7.77 -2.39 -0.02 1.46 16 27 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 28 H 0.03 0.59 8.05 -2.39 -0.02 0.57 16 29 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.34 5.13 8.19 -89.69 -0.74 4.40 16 31 H 0.35 4.37 9.08 -89.69 -0.81 3.56 16 32 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.07 2.02 8.06 -2.39 -0.02 2.00 16 Total: -1.00 -64.85 268.33 -1.40 -66.25 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: -1.18 Total: 18.66 kcal Atomic # 6 Polarization: -27.46 SS G_CDS: 2.37 Total: -25.10 kcal Atomic # 7 Polarization: -102.08 SS G_CDS: -4.61 Total: -106.69 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.88 kcal Total: -64.85 -1.40 -66.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724031513.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.399 kcal (2) G-P(sol) polarization free energy of solvation -64.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds