Wall clock time and date at job start Mon Mar 30 2020 02:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 N 1.46906 * 109.47358 * 179.97438 * 9 7 2 11 11 C 1.46899 * 111.00346 * 179.97438 * 10 9 7 12 12 H 1.08996 * 110.66788 * 31.76309 * 11 10 9 13 13 C 1.54886 * 110.75275 * 268.32728 * 11 10 9 14 14 C 1.54271 * 104.19357 * 203.73837 * 13 11 10 15 15 C 1.53882 * 106.59451 * 23.61394 * 14 13 11 16 16 H 1.08998 * 110.02928 * 240.71203 * 15 14 13 17 17 C 1.53001 * 110.07398 * 119.30802 * 15 14 13 18 18 N 1.46898 * 109.47212 * 67.80194 * 17 15 14 19 19 C 1.54260 * 106.59951 * 359.97438 * 15 14 13 20 20 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.46665 * 299.99501 * 9 7 2 22 22 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 23 23 H 1.00899 * 110.99658 * 56.03755 * 10 9 7 24 24 H 1.08999 * 110.48920 * 322.42094 * 13 11 10 25 25 H 1.09001 * 110.49068 * 85.06589 * 13 11 10 26 26 H 1.08994 * 110.03495 * 264.32515 * 14 13 11 27 27 H 1.08999 * 110.03075 * 142.89078 * 14 13 11 28 28 H 1.08996 * 109.46914 * 187.80988 * 17 15 14 29 29 H 1.09006 * 109.46565 * 307.80304 * 17 15 14 30 30 H 1.00904 * 110.99698 * 56.05098 * 18 17 15 31 31 H 1.00903 * 111.00041 * 179.97438 * 18 17 15 32 32 H 1.08999 * 110.48461 * 217.71503 * 19 15 14 33 33 H 1.09000 * 110.59972 * 95.12988 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 1.5055 -4.9071 0.0011 12 1 0.5597 -4.8321 -0.5354 13 6 1.2816 -5.4093 1.4491 14 6 1.1331 -6.9376 1.3007 15 6 1.8427 -7.3230 -0.0092 16 1 1.1322 -7.7793 -0.6984 17 6 2.9888 -8.2944 0.2806 18 7 2.4393 -9.5769 0.7401 19 6 2.3971 -6.0154 -0.6113 20 1 -0.4850 -0.8401 -0.0004 21 1 0.6242 -2.5567 0.8904 22 1 0.6248 -2.5571 -0.8896 23 1 2.8407 -3.5485 0.7818 24 1 2.1417 -5.1684 2.0738 25 1 0.3725 -4.9765 1.8668 26 1 0.0783 -7.2069 1.2471 27 1 1.6053 -7.4422 2.1436 28 1 3.5695 -8.4525 -0.6282 29 1 3.6322 -7.8764 1.0548 30 1 1.7890 -9.9536 0.0668 31 1 3.1770 -10.2363 0.9378 32 1 2.3023 -6.0252 -1.6971 33 1 3.4378 -5.8707 -0.3214 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724031518.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:23 Heat of formation + Delta-G solvation = -27.199323 kcal Electronic energy + Delta-G solvation = -12647.480314 eV Core-core repulsion = 10513.525556 eV Total energy + Delta-G solvation = -2133.954758 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.63422 -35.26491 -33.49835 -31.79448 -28.69979 -27.61130 -24.92333 -23.21483 -21.88593 -20.04211 -19.48843 -16.87213 -16.01000 -15.65734 -14.61015 -14.53692 -14.05493 -13.64678 -13.35154 -12.84149 -12.40934 -12.23291 -11.82826 -11.14589 -10.87418 -10.82055 -10.71490 -10.67314 -10.48557 -10.26865 -10.17772 -10.02736 -8.83174 -8.59568 -8.38959 -7.31142 -6.35526 -4.04167 3.46069 3.48808 3.67313 4.36357 4.55839 4.80228 4.89250 4.95906 5.36976 5.40627 5.43092 5.49954 5.67492 5.81235 5.82278 5.92900 6.04586 6.11899 6.24977 6.32837 6.51398 6.58935 6.65485 6.96094 7.00310 7.21143 7.24898 7.83979 8.19894 8.51531 8.60819 8.89699 9.67790 11.04303 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.091301 B = 0.006130 C = 0.005970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 306.604841 B = 4566.642342 C = 4688.996986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.014 3.986 3 Si 1.074 2.926 4 H -0.283 1.283 5 H -0.287 1.287 6 H -0.288 1.288 7 C -0.596 4.596 8 H 0.055 0.945 9 C 0.184 3.816 10 N -0.677 5.677 11 C 0.083 3.917 12 H 0.073 0.927 13 C -0.155 4.155 14 C -0.104 4.104 15 C -0.091 4.091 16 H 0.065 0.935 17 C 0.068 3.932 18 N -0.851 5.851 19 C -0.106 4.106 20 H 0.267 0.733 21 H -0.024 1.024 22 H 0.016 0.984 23 H 0.332 0.668 24 H 0.062 0.938 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.067 0.933 28 H 0.024 0.976 29 H 0.072 0.928 30 H 0.338 0.662 31 H 0.338 0.662 32 H 0.062 0.938 33 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.288 -15.373 0.913 15.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.190 4.190 3 Si 0.902 3.098 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.215 1.215 7 C -0.634 4.634 8 H 0.073 0.927 9 C 0.057 3.943 10 N -0.305 5.305 11 C -0.028 4.028 12 H 0.091 0.909 13 C -0.194 4.194 14 C -0.142 4.142 15 C -0.110 4.110 16 H 0.083 0.917 17 C -0.062 4.062 18 N -0.380 5.380 19 C -0.145 4.145 20 H 0.077 0.923 21 H -0.006 1.006 22 H 0.034 0.966 23 H 0.149 0.851 24 H 0.081 0.919 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.086 0.914 28 H 0.042 0.958 29 H 0.090 0.910 30 H 0.150 0.850 31 H 0.149 0.851 32 H 0.081 0.919 33 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.885 -13.258 0.826 13.840 hybrid contribution 0.261 -2.178 0.046 2.194 sum 4.146 -15.436 0.872 16.007 Atomic orbital electron populations 1.70791 1.06892 1.30410 1.46961 1.25869 0.96497 1.02765 0.93834 0.83476 0.74768 0.75044 0.76522 1.20830 1.21387 1.21483 1.22023 0.94795 0.91381 1.55234 0.92655 1.19668 0.91267 0.89001 0.94368 1.60556 1.20331 1.00753 1.48901 1.22526 0.96421 0.90305 0.93596 0.90869 1.23115 1.01490 0.95824 0.98980 1.21987 0.99803 0.95275 0.97183 1.21774 0.96503 0.95386 0.97369 0.91664 1.21919 0.96194 0.89943 0.98151 1.58725 1.21609 1.06297 1.51373 1.22347 0.99869 0.92676 0.99613 0.92319 1.00610 0.96560 0.85101 0.91881 0.92211 0.92565 0.91395 0.95758 0.90965 0.85006 0.85061 0.91947 0.91373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.50 13.65 55.43 0.76 -27.74 16 2 C 0.01 0.41 5.46 -17.82 -0.10 0.31 16 3 Si 1.07 25.75 29.90 -169.99 -5.08 20.67 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 6 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.60 -17.47 9.32 -34.44 -0.32 -17.79 16 8 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 9 C 0.18 4.93 4.62 -4.97 -0.02 4.91 16 10 N -0.68 -15.01 6.38 -105.91 -0.68 -15.69 16 11 C 0.08 1.51 3.23 -65.74 -0.21 1.30 16 12 H 0.07 1.42 7.82 -51.93 -0.41 1.01 16 13 C -0.15 -2.51 6.41 -25.07 -0.16 -2.67 16 14 C -0.10 -1.42 6.30 -25.61 -0.16 -1.58 16 15 C -0.09 -1.14 3.08 -89.50 -0.28 -1.42 16 16 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 17 C 0.07 0.74 5.80 -3.82 -0.02 0.72 16 18 N -0.85 -7.97 9.39 -10.37 -0.10 -8.07 16 19 C -0.11 -1.59 6.04 -25.09 -0.15 -1.74 16 20 H 0.27 8.31 7.22 -40.82 -0.29 8.01 16 21 H -0.02 -0.66 8.01 -51.93 -0.42 -1.08 16 22 H 0.02 0.47 7.95 -51.93 -0.41 0.05 16 23 H 0.33 7.12 8.20 -39.29 -0.32 6.80 16 24 H 0.06 1.02 7.77 -51.93 -0.40 0.61 16 25 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.07 0.91 7.62 -51.93 -0.40 0.52 16 28 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.34 2.79 8.99 -39.29 -0.35 2.43 16 31 H 0.34 2.54 9.08 -39.29 -0.36 2.18 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.07 1.02 7.86 -51.93 -0.41 0.61 16 LS Contribution 268.07 15.07 4.04 4.04 Total: -1.00 -31.11 268.07 -8.00 -39.11 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -5.51 Total: 5.64 kcal Atomic # 6 Polarization: -16.53 SS G_CDS: -1.42 Total: -17.96 kcal Atomic # 7 Polarization: -51.48 SS G_CDS: -0.02 Total: -51.50 kcal Atomic # 14 Polarization: 25.75 SS G_CDS: -5.08 Total: 20.67 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -31.11 -8.00 -39.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724031518.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.907 kcal (2) G-P(sol) polarization free energy of solvation -31.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds