Wall clock time and date at job start Mon Mar 30 2020 02:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 N 1.46906 * 109.47358 * 179.97438 * 9 7 2 11 11 C 1.46899 * 111.00346 * 179.97438 * 10 9 7 12 12 H 1.08996 * 110.66788 * 31.76309 * 11 10 9 13 13 C 1.54886 * 110.75275 * 268.32728 * 11 10 9 14 14 C 1.54271 * 104.19357 * 203.73837 * 13 11 10 15 15 C 1.53882 * 106.59451 * 23.61394 * 14 13 11 16 16 H 1.08998 * 110.02928 * 240.71203 * 15 14 13 17 17 C 1.53001 * 110.07398 * 119.30802 * 15 14 13 18 18 N 1.46898 * 109.47212 * 67.80194 * 17 15 14 19 19 C 1.54260 * 106.59951 * 359.97438 * 15 14 13 20 20 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.46665 * 299.99501 * 9 7 2 22 22 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 23 23 H 1.00899 * 110.99658 * 56.03755 * 10 9 7 24 24 H 1.08999 * 110.48920 * 322.42094 * 13 11 10 25 25 H 1.09001 * 110.49068 * 85.06589 * 13 11 10 26 26 H 1.08994 * 110.03495 * 264.32515 * 14 13 11 27 27 H 1.08999 * 110.03075 * 142.89078 * 14 13 11 28 28 H 1.08996 * 109.46914 * 187.80988 * 17 15 14 29 29 H 1.09006 * 109.46565 * 307.80304 * 17 15 14 30 30 H 1.00904 * 110.99698 * 56.05098 * 18 17 15 31 31 H 1.00903 * 111.00041 * 179.97438 * 18 17 15 32 32 H 1.08999 * 110.48461 * 217.71503 * 19 15 14 33 33 H 1.09000 * 110.59972 * 95.12988 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 1.5055 -4.9071 0.0011 12 1 0.5597 -4.8321 -0.5354 13 6 1.2816 -5.4093 1.4491 14 6 1.1331 -6.9376 1.3007 15 6 1.8427 -7.3230 -0.0092 16 1 1.1322 -7.7793 -0.6984 17 6 2.9888 -8.2944 0.2806 18 7 2.4393 -9.5769 0.7401 19 6 2.3971 -6.0154 -0.6113 20 1 -0.4850 -0.8401 -0.0004 21 1 0.6242 -2.5567 0.8904 22 1 0.6248 -2.5571 -0.8896 23 1 2.8407 -3.5485 0.7818 24 1 2.1417 -5.1684 2.0738 25 1 0.3725 -4.9765 1.8668 26 1 0.0783 -7.2069 1.2471 27 1 1.6053 -7.4422 2.1436 28 1 3.5695 -8.4525 -0.6282 29 1 3.6322 -7.8764 1.0548 30 1 1.7890 -9.9536 0.0668 31 1 3.1770 -10.2363 0.9378 32 1 2.3023 -6.0252 -1.6971 33 1 3.4378 -5.8707 -0.3214 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724031518.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:23 Heat of formation + Delta-G solvation = -50.652308 kcal Electronic energy + Delta-G solvation = -12648.497312 eV Core-core repulsion = 10513.525556 eV Total energy + Delta-G solvation = -2134.971756 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.92150 -36.81638 -35.13667 -33.47689 -29.87747 -29.24573 -26.76538 -24.38220 -23.90499 -21.51981 -20.57320 -19.03203 -17.11793 -16.84186 -16.03357 -15.81718 -15.55059 -15.39569 -14.78138 -14.32509 -14.13190 -13.95373 -13.03340 -12.94093 -12.64552 -12.49657 -12.20779 -11.95598 -11.91385 -11.82839 -11.59806 -11.32667 -10.75830 -10.63020 -9.56153 -9.16584 -8.73009 -6.44143 1.53418 1.62480 1.82283 2.55575 3.11852 3.27305 3.68977 3.71825 3.80741 4.06106 4.18623 4.43292 4.49231 4.58706 4.66285 4.70698 4.77323 4.83574 4.92554 4.97581 5.05503 5.18100 5.23186 5.33657 5.51106 5.73570 6.00684 6.25315 6.37346 6.54514 6.63971 6.68866 7.38817 8.66488 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.091301 B = 0.006130 C = 0.005970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 306.604841 B = 4566.642342 C = 4688.996986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.038 4.038 3 Si 1.126 2.874 4 H -0.283 1.283 5 H -0.269 1.269 6 H -0.267 1.267 7 C -0.614 4.614 8 H 0.057 0.943 9 C 0.197 3.803 10 N -0.677 5.677 11 C 0.073 3.927 12 H 0.055 0.945 13 C -0.150 4.150 14 C -0.095 4.095 15 C -0.082 4.082 16 H 0.075 0.925 17 C 0.075 3.925 18 N -0.856 5.856 19 C -0.097 4.097 20 H 0.252 0.748 21 H -0.045 1.045 22 H -0.009 1.009 23 H 0.336 0.664 24 H 0.064 0.936 25 H 0.042 0.958 26 H 0.060 0.940 27 H 0.075 0.925 28 H 0.034 0.966 29 H 0.067 0.933 30 H 0.346 0.654 31 H 0.350 0.650 32 H 0.063 0.937 33 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.672 -16.290 1.002 17.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.235 4.235 3 Si 0.946 3.054 4 H -0.208 1.208 5 H -0.195 1.195 6 H -0.192 1.192 7 C -0.651 4.651 8 H 0.075 0.925 9 C 0.069 3.931 10 N -0.306 5.306 11 C -0.037 4.037 12 H 0.073 0.927 13 C -0.189 4.189 14 C -0.133 4.133 15 C -0.102 4.102 16 H 0.093 0.907 17 C -0.056 4.056 18 N -0.387 5.387 19 C -0.135 4.135 20 H 0.061 0.939 21 H -0.027 1.027 22 H 0.009 0.991 23 H 0.154 0.846 24 H 0.083 0.917 25 H 0.061 0.939 26 H 0.078 0.922 27 H 0.094 0.906 28 H 0.052 0.948 29 H 0.086 0.914 30 H 0.159 0.841 31 H 0.163 0.837 32 H 0.081 0.919 33 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.278 -14.234 0.919 15.209 hybrid contribution -0.197 -1.962 0.017 1.972 sum 5.080 -16.196 0.935 17.000 Atomic orbital electron populations 1.70930 1.07990 1.29594 1.48817 1.27542 0.96510 1.06949 0.92480 0.82837 0.73978 0.70540 0.78085 1.20798 1.19460 1.19192 1.22401 0.95082 0.92624 1.55043 0.92517 1.19347 0.91316 0.90344 0.92139 1.60489 1.19708 1.01170 1.49220 1.22668 0.96298 0.89430 0.95349 0.92654 1.23030 1.00739 0.97904 0.97276 1.21921 1.00396 0.92836 0.98123 1.21699 0.97262 0.94585 0.96638 0.90673 1.21773 0.95212 0.90133 0.98507 1.58669 1.22277 1.06141 1.51592 1.22259 0.99271 0.92423 0.99585 0.93863 1.02718 0.99060 0.84601 0.91713 0.93861 0.92160 0.90608 0.94817 0.91422 0.84149 0.83683 0.91855 0.91066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.41 13.65 21.45 0.29 -59.12 16 2 C -0.04 -2.23 5.46 84.65 0.46 -1.77 16 3 Si 1.13 51.07 29.90 68.60 2.05 53.13 16 4 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 5 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 6 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 7 C -0.61 -36.34 9.32 25.60 0.24 -36.11 16 8 H 0.06 3.28 7.81 -2.91 -0.02 3.26 16 9 C 0.20 10.89 4.62 85.56 0.39 11.28 16 10 N -0.68 -30.40 6.38 -488.98 -3.12 -33.51 16 11 C 0.07 2.67 3.23 46.20 0.15 2.82 16 12 H 0.06 2.21 7.82 -2.39 -0.02 2.19 16 13 C -0.15 -4.83 6.41 31.67 0.20 -4.62 16 14 C -0.09 -2.41 6.30 31.32 0.20 -2.21 16 15 C -0.08 -1.89 3.08 -10.07 -0.03 -1.92 16 16 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 17 C 0.07 1.40 5.80 86.30 0.50 1.90 16 18 N -0.86 -13.49 9.39 -186.72 -1.75 -15.25 16 19 C -0.10 -2.76 6.04 31.66 0.19 -2.57 16 20 H 0.25 16.31 7.22 -92.71 -0.67 15.64 16 21 H -0.04 -2.62 8.01 -2.39 -0.02 -2.64 16 22 H -0.01 -0.51 7.95 -2.39 -0.02 -0.53 16 23 H 0.34 14.46 8.20 -89.69 -0.74 13.73 16 24 H 0.06 2.05 7.77 -2.39 -0.02 2.03 16 25 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.08 1.85 7.62 -2.39 -0.02 1.83 16 28 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 30 H 0.35 4.66 8.99 -89.69 -0.81 3.85 16 31 H 0.35 4.23 9.08 -89.69 -0.81 3.41 16 32 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.07 2.00 7.86 -2.39 -0.02 1.99 16 Total: -1.00 -66.72 268.07 -1.38 -68.09 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: -1.16 Total: 19.85 kcal Atomic # 6 Polarization: -35.50 SS G_CDS: 2.31 Total: -33.19 kcal Atomic # 7 Polarization: -103.30 SS G_CDS: -4.58 Total: -107.88 kcal Atomic # 14 Polarization: 51.07 SS G_CDS: 2.05 Total: 53.13 kcal Total: -66.72 -1.38 -68.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724031518.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.442 kcal (2) G-P(sol) polarization free energy of solvation -66.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds