Wall clock time and date at job start Mon Mar 30 2020 02:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99667 * 2 1 4 4 H 1.48502 * 109.47412 * 270.00227 * 3 2 1 5 5 H 1.48496 * 109.47460 * 30.00377 * 3 2 1 6 6 H 1.48504 * 109.47120 * 150.00434 * 3 2 1 7 7 C 1.37876 * 120.00140 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99818 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99857 * 179.97438 * 7 2 1 10 10 N 1.46900 * 109.47056 * 180.02562 * 9 7 2 11 11 C 1.46907 * 111.00149 * 179.97438 * 10 9 7 12 12 H 1.08993 * 110.01098 * 326.38930 * 11 10 9 13 13 C 1.54265 * 110.07071 * 87.80605 * 11 10 9 14 14 C 1.54888 * 104.19721 * 142.91755 * 13 11 10 15 15 C 1.54892 * 102.74611 * 322.05788 * 14 13 11 16 16 H 1.09002 * 110.48502 * 279.26222 * 15 14 13 17 17 C 1.53002 * 110.59807 * 156.67207 * 15 14 13 18 18 N 1.46900 * 109.46784 * 68.31898 * 17 15 14 19 19 C 1.53873 * 110.02951 * 204.99569 * 11 10 9 20 20 H 0.97000 * 120.00389 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.47564 * 59.99549 * 9 7 2 22 22 H 1.09004 * 109.47293 * 299.99610 * 9 7 2 23 23 H 1.00903 * 111.00500 * 56.03916 * 10 9 7 24 24 H 1.09007 * 110.48635 * 261.59528 * 13 11 10 25 25 H 1.08996 * 110.49299 * 24.23824 * 13 11 10 26 26 H 1.08992 * 110.76047 * 203.74196 * 14 13 11 27 27 H 1.09000 * 110.75534 * 80.36765 * 14 13 11 28 28 H 1.09003 * 109.47103 * 188.31267 * 17 15 14 29 29 H 1.08991 * 109.47595 * 308.31608 * 17 15 14 30 30 H 1.00900 * 111.00240 * 56.04570 * 18 17 15 31 31 H 1.00903 * 111.00115 * 179.97438 * 18 17 15 32 32 H 1.09002 * 110.03017 * 121.38694 * 19 11 10 33 33 H 1.08992 * 110.03600 * 359.95248 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 4.0012 -2.5789 -0.0022 11 6 5.4698 -2.6181 -0.0034 12 1 5.8649 -1.7751 -0.5702 13 6 6.0017 -2.5775 1.4440 14 6 7.2325 -3.5175 1.4230 15 6 6.7747 -4.6591 0.4816 16 1 6.1463 -5.3686 1.0200 17 6 7.9836 -5.3716 -0.1280 18 7 8.6986 -6.1086 0.9226 19 6 5.9612 -3.9416 -0.6154 20 1 -0.4851 0.8400 0.0004 21 1 3.8753 -0.6802 0.8888 22 1 3.8745 -0.6799 -0.8912 23 1 3.6254 -3.0948 -0.7837 24 1 6.3001 -1.5641 1.7126 25 1 5.2485 -2.9508 2.1379 26 1 7.4429 -3.9010 2.4213 27 1 8.1030 -3.0049 1.0135 28 1 7.6459 -6.0686 -0.8950 29 1 8.6520 -4.6357 -0.5747 30 1 8.0826 -6.7524 1.3959 31 1 9.5018 -6.5886 0.5449 32 1 6.5950 -3.7410 -1.4792 33 1 5.1101 -4.5552 -0.9107 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724031520.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:24 Heat of formation + Delta-G solvation = -17.677761 kcal Electronic energy + Delta-G solvation = -12666.894394 eV Core-core repulsion = 10533.352522 eV Total energy + Delta-G solvation = -2133.541872 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.58755 -35.21754 -33.30297 -31.89243 -28.77763 -28.21235 -25.46076 -23.24098 -21.23915 -19.99145 -19.46823 -16.72737 -15.99896 -15.50006 -14.74652 -14.50093 -14.24560 -13.98054 -13.44638 -13.17209 -12.42190 -11.95332 -11.93998 -11.46523 -10.87142 -10.80012 -10.67609 -10.65454 -10.37667 -10.32093 -10.08480 -9.73105 -9.22145 -8.81080 -8.57863 -7.42587 -6.03949 -4.01523 3.29865 3.37384 3.41108 4.37956 4.44145 4.81181 4.85814 5.03101 5.15249 5.29593 5.38969 5.58551 5.71157 5.75475 5.88671 5.93288 6.01645 6.14987 6.27121 6.37834 6.48970 6.56700 6.74578 6.89952 6.97061 7.06362 7.25851 7.66760 7.97407 8.40389 8.69043 9.04210 9.58539 11.09478 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.077379 B = 0.006726 C = 0.006487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 361.766267 B = 4162.249917 C = 4315.351407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.068 3.932 3 Si 0.878 3.122 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.515 4.515 8 H 0.078 0.922 9 C 0.163 3.837 10 N -0.674 5.674 11 C 0.079 3.921 12 H 0.035 0.965 13 C -0.116 4.116 14 C -0.103 4.103 15 C -0.087 4.087 16 H 0.073 0.927 17 C 0.068 3.932 18 N -0.850 5.850 19 C -0.119 4.119 20 H 0.263 0.737 21 H 0.026 0.974 22 H -0.022 1.022 23 H 0.333 0.667 24 H 0.055 0.945 25 H 0.077 0.923 26 H 0.064 0.936 27 H 0.059 0.941 28 H 0.023 0.977 29 H 0.070 0.930 30 H 0.339 0.661 31 H 0.337 0.663 32 H 0.059 0.941 33 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.779 -8.761 -0.311 18.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.134 4.134 3 Si 0.705 3.295 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.191 1.191 7 C -0.553 4.553 8 H 0.096 0.904 9 C 0.036 3.964 10 N -0.305 5.305 11 C -0.031 4.031 12 H 0.053 0.947 13 C -0.154 4.154 14 C -0.141 4.141 15 C -0.106 4.106 16 H 0.091 0.909 17 C -0.063 4.063 18 N -0.379 5.379 19 C -0.158 4.158 20 H 0.073 0.927 21 H 0.044 0.956 22 H -0.005 1.005 23 H 0.151 0.849 24 H 0.074 0.926 25 H 0.096 0.904 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.041 0.959 29 H 0.088 0.912 30 H 0.152 0.848 31 H 0.149 0.851 32 H 0.077 0.923 33 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 15.674 -7.975 0.692 17.599 hybrid contribution 0.263 0.415 -1.550 1.626 sum 15.937 -7.560 -0.859 17.660 Atomic orbital electron populations 1.69902 1.06163 1.26846 1.51162 1.24908 0.94742 0.98951 0.94756 0.86819 0.80381 0.83861 0.78423 1.20387 1.21146 1.19144 1.21089 0.89063 0.94766 1.50421 0.90351 1.20040 0.96492 0.85284 0.94626 1.60673 1.04111 1.16554 1.49190 1.22133 0.90110 0.95267 0.95621 0.94696 1.22462 0.96893 0.98814 0.97278 1.22376 0.97232 0.95374 0.99137 1.21924 0.94919 0.97177 0.96552 0.90868 1.21886 0.95388 0.96769 0.92212 1.58703 1.12476 1.34959 1.31771 1.22369 0.99363 0.96661 0.97398 0.92684 0.95577 1.00477 0.84866 0.92630 0.90382 0.91675 0.92182 0.95879 0.91184 0.84835 0.85133 0.92257 0.91199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.12 13.96 55.43 0.77 -27.35 16 2 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 3 Si 0.88 22.04 27.47 -169.99 -4.67 17.37 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.27 -6.50 6.54 56.52 0.37 -6.13 16 7 C -0.52 -15.06 9.87 -34.44 -0.34 -15.40 16 8 H 0.08 2.47 8.06 -52.49 -0.42 2.05 16 9 C 0.16 4.09 4.34 -4.98 -0.02 4.07 16 10 N -0.67 -14.30 6.26 -106.81 -0.67 -14.96 16 11 C 0.08 1.38 3.25 -66.59 -0.22 1.16 16 12 H 0.04 0.63 7.81 -51.93 -0.41 0.23 16 13 C -0.12 -1.89 6.49 -25.07 -0.16 -2.05 16 14 C -0.10 -1.37 6.19 -24.74 -0.15 -1.53 16 15 C -0.09 -1.07 3.03 -88.96 -0.27 -1.34 16 16 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 17 C 0.07 0.70 6.07 -3.82 -0.02 0.67 16 18 N -0.85 -7.75 9.48 -10.37 -0.10 -7.85 16 19 C -0.12 -1.66 6.05 -25.61 -0.16 -1.81 16 20 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 21 H 0.03 0.67 7.20 -51.93 -0.37 0.30 16 22 H -0.02 -0.56 7.49 -51.93 -0.39 -0.95 16 23 H 0.33 6.81 8.00 -39.29 -0.31 6.50 16 24 H 0.05 0.91 8.14 -51.92 -0.42 0.48 16 25 H 0.08 1.39 8.05 -51.93 -0.42 0.97 16 26 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.06 0.77 8.00 -51.93 -0.42 0.36 16 28 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.07 0.73 8.06 -51.93 -0.42 0.31 16 30 H 0.34 2.80 8.99 -39.29 -0.35 2.44 16 31 H 0.34 2.43 9.08 -39.29 -0.36 2.07 16 32 H 0.06 0.75 7.84 -51.93 -0.41 0.34 16 33 H 0.07 0.98 7.47 -51.93 -0.39 0.59 16 LS Contribution 265.61 15.07 4.00 4.00 Total: -1.00 -30.96 265.61 -7.62 -38.58 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -5.52 Total: 4.53 kcal Atomic # 6 Polarization: -12.87 SS G_CDS: -1.44 Total: -14.31 kcal Atomic # 7 Polarization: -50.17 SS G_CDS: 0.01 Total: -50.16 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.67 Total: 17.37 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -30.96 -7.62 -38.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724031520.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.900 kcal (2) G-P(sol) polarization free energy of solvation -30.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds