Wall clock time and date at job start Mon Mar 30 2020 02:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99667 * 2 1 4 4 H 1.48502 * 109.47412 * 270.00227 * 3 2 1 5 5 H 1.48496 * 109.47460 * 30.00377 * 3 2 1 6 6 H 1.48504 * 109.47120 * 150.00434 * 3 2 1 7 7 C 1.37876 * 120.00140 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99818 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99857 * 179.97438 * 7 2 1 10 10 N 1.46900 * 109.47056 * 180.02562 * 9 7 2 11 11 C 1.46907 * 111.00149 * 179.97438 * 10 9 7 12 12 H 1.08993 * 110.01098 * 326.38930 * 11 10 9 13 13 C 1.54265 * 110.07071 * 87.80605 * 11 10 9 14 14 C 1.54888 * 104.19721 * 142.91755 * 13 11 10 15 15 C 1.54892 * 102.74611 * 322.05788 * 14 13 11 16 16 H 1.09002 * 110.48502 * 279.26222 * 15 14 13 17 17 C 1.53002 * 110.59807 * 156.67207 * 15 14 13 18 18 N 1.46900 * 109.46784 * 68.31898 * 17 15 14 19 19 C 1.53873 * 110.02951 * 204.99569 * 11 10 9 20 20 H 0.97000 * 120.00389 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.47564 * 59.99549 * 9 7 2 22 22 H 1.09004 * 109.47293 * 299.99610 * 9 7 2 23 23 H 1.00903 * 111.00500 * 56.03916 * 10 9 7 24 24 H 1.09007 * 110.48635 * 261.59528 * 13 11 10 25 25 H 1.08996 * 110.49299 * 24.23824 * 13 11 10 26 26 H 1.08992 * 110.76047 * 203.74196 * 14 13 11 27 27 H 1.09000 * 110.75534 * 80.36765 * 14 13 11 28 28 H 1.09003 * 109.47103 * 188.31267 * 17 15 14 29 29 H 1.08991 * 109.47595 * 308.31608 * 17 15 14 30 30 H 1.00900 * 111.00240 * 56.04570 * 18 17 15 31 31 H 1.00903 * 111.00115 * 179.97438 * 18 17 15 32 32 H 1.09002 * 110.03017 * 121.38694 * 19 11 10 33 33 H 1.08992 * 110.03600 * 359.95248 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 4.0012 -2.5789 -0.0022 11 6 5.4698 -2.6181 -0.0034 12 1 5.8649 -1.7751 -0.5702 13 6 6.0017 -2.5775 1.4440 14 6 7.2325 -3.5175 1.4230 15 6 6.7747 -4.6591 0.4816 16 1 6.1463 -5.3686 1.0200 17 6 7.9836 -5.3716 -0.1280 18 7 8.6986 -6.1086 0.9226 19 6 5.9612 -3.9416 -0.6154 20 1 -0.4851 0.8400 0.0004 21 1 3.8753 -0.6802 0.8888 22 1 3.8745 -0.6799 -0.8912 23 1 3.6254 -3.0948 -0.7837 24 1 6.3001 -1.5641 1.7126 25 1 5.2485 -2.9508 2.1379 26 1 7.4429 -3.9010 2.4213 27 1 8.1030 -3.0049 1.0135 28 1 7.6459 -6.0686 -0.8950 29 1 8.6520 -4.6357 -0.5747 30 1 8.0826 -6.7524 1.3959 31 1 9.5018 -6.5886 0.5449 32 1 6.5950 -3.7410 -1.4792 33 1 5.1101 -4.5552 -0.9107 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724031520.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:24 Heat of formation + Delta-G solvation = -41.651201 kcal Electronic energy + Delta-G solvation = -12667.933960 eV Core-core repulsion = 10533.352522 eV Total energy + Delta-G solvation = -2134.581438 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.79728 -36.60053 -34.90947 -33.65496 -29.99674 -29.80258 -27.06745 -24.22181 -23.26568 -21.11674 -20.75781 -18.89864 -16.88559 -16.84883 -16.48165 -15.80627 -15.43025 -15.20452 -15.10038 -14.43916 -14.29668 -13.80011 -13.29113 -12.81192 -12.67252 -12.22356 -11.90852 -11.81820 -11.73174 -11.70178 -11.61986 -11.39202 -11.34466 -10.83456 -9.50953 -9.13780 -8.32286 -6.36771 1.32138 1.34673 1.46195 2.32205 3.01609 3.48723 3.54955 3.73690 3.92784 4.07582 4.41583 4.52835 4.58832 4.67449 4.73347 4.76869 4.81228 4.92459 5.00629 5.05974 5.12001 5.22549 5.34236 5.38536 5.53664 5.59257 5.99837 6.29299 6.57052 6.66568 6.67060 6.78687 7.28657 8.84580 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.077379 B = 0.006726 C = 0.006487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 361.766267 B = 4162.249917 C = 4315.351407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.009 3.991 3 Si 0.951 3.049 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.254 1.254 7 C -0.529 4.529 8 H 0.037 0.963 9 C 0.176 3.824 10 N -0.683 5.683 11 C 0.073 3.927 12 H 0.032 0.968 13 C -0.118 4.118 14 C -0.092 4.092 15 C -0.081 4.081 16 H 0.068 0.932 17 C 0.075 3.925 18 N -0.856 5.856 19 C -0.113 4.113 20 H 0.268 0.732 21 H 0.021 0.979 22 H -0.018 1.018 23 H 0.335 0.665 24 H 0.051 0.949 25 H 0.057 0.943 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.032 0.968 29 H 0.072 0.928 30 H 0.344 0.656 31 H 0.349 0.651 32 H 0.078 0.922 33 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.201 -8.572 -0.608 20.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.189 4.189 3 Si 0.774 3.226 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.178 1.178 7 C -0.568 4.568 8 H 0.056 0.944 9 C 0.047 3.953 10 N -0.314 5.314 11 C -0.037 4.037 12 H 0.050 0.950 13 C -0.157 4.157 14 C -0.130 4.130 15 C -0.100 4.100 16 H 0.086 0.914 17 C -0.056 4.056 18 N -0.387 5.387 19 C -0.152 4.152 20 H 0.077 0.923 21 H 0.039 0.961 22 H 0.000 1.000 23 H 0.153 0.847 24 H 0.070 0.930 25 H 0.076 0.924 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.050 0.950 29 H 0.091 0.909 30 H 0.157 0.843 31 H 0.163 0.837 32 H 0.096 0.904 33 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 18.120 -7.816 0.393 19.737 hybrid contribution -0.543 0.266 -1.438 1.560 sum 17.577 -7.549 -1.045 19.158 Atomic orbital electron populations 1.70049 1.08127 1.28271 1.52281 1.25874 0.95645 1.03272 0.94073 0.85659 0.79260 0.78435 0.79234 1.18973 1.20370 1.17758 1.21358 0.91413 0.93469 1.50527 0.94445 1.19759 0.93630 0.87513 0.94349 1.60594 1.06907 1.14375 1.49558 1.22305 0.87441 0.97248 0.96687 0.94991 1.22452 0.97767 0.99407 0.96033 1.22297 0.95942 0.94912 0.99827 1.21866 0.95613 0.96785 0.95754 0.91380 1.21757 0.94442 0.96971 0.92438 1.58667 1.12982 1.35490 1.31581 1.22314 0.99750 0.94748 0.98341 0.92283 0.96086 0.99997 0.84656 0.92985 0.92419 0.91171 0.91234 0.94978 0.90920 0.84283 0.83746 0.90375 0.91498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.19 13.96 21.45 0.30 -59.89 16 2 C 0.01 0.53 5.47 84.65 0.46 1.00 16 3 Si 0.95 45.14 27.47 68.60 1.88 47.03 16 4 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 6 H -0.25 -11.42 6.54 99.48 0.65 -10.77 16 7 C -0.53 -31.66 9.87 25.60 0.25 -31.40 16 8 H 0.04 2.47 8.06 -2.91 -0.02 2.45 16 9 C 0.18 8.79 4.34 85.56 0.37 9.16 16 10 N -0.68 -28.96 6.26 -491.83 -3.08 -32.04 16 11 C 0.07 2.45 3.25 45.64 0.15 2.60 16 12 H 0.03 1.10 7.81 -2.39 -0.02 1.08 16 13 C -0.12 -3.73 6.49 31.67 0.21 -3.52 16 14 C -0.09 -2.24 6.19 31.89 0.20 -2.04 16 15 C -0.08 -1.81 3.03 -9.72 -0.03 -1.84 16 16 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 17 C 0.07 1.30 6.07 86.30 0.52 1.83 16 18 N -0.86 -13.17 9.48 -186.72 -1.77 -14.94 16 19 C -0.11 -2.91 6.05 31.32 0.19 -2.72 16 20 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 21 H 0.02 1.07 7.20 -2.39 -0.02 1.05 16 22 H -0.02 -0.85 7.49 -2.38 -0.02 -0.87 16 23 H 0.34 13.81 8.00 -89.69 -0.72 13.09 16 24 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 25 H 0.06 2.04 8.05 -2.39 -0.02 2.02 16 26 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.07 1.59 8.00 -2.39 -0.02 1.57 16 28 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.07 1.26 8.06 -2.39 -0.02 1.24 16 30 H 0.34 4.80 8.99 -89.69 -0.81 3.99 16 31 H 0.35 4.01 9.08 -89.69 -0.81 3.20 16 32 H 0.08 1.73 7.84 -2.39 -0.02 1.72 16 33 H 0.07 1.77 7.47 -2.39 -0.02 1.76 16 Total: -1.00 -66.63 265.61 -1.63 -68.26 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: -1.29 Total: 18.53 kcal Atomic # 6 Polarization: -29.27 SS G_CDS: 2.32 Total: -26.95 kcal Atomic # 7 Polarization: -102.32 SS G_CDS: -4.55 Total: -106.87 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.88 Total: 47.03 kcal Total: -66.63 -1.63 -68.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724031520.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.613 kcal (2) G-P(sol) polarization free energy of solvation -66.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds