Wall clock time and date at job start Mon Mar 30 2020 02:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00235 * 2 1 4 4 H 1.48495 * 109.47776 * 240.00080 * 3 2 1 5 5 H 1.48503 * 109.46851 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47028 * 119.99683 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99394 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.46577 * 179.97438 * 9 7 2 11 11 C 1.46905 * 110.99800 * 179.97438 * 10 9 7 12 12 H 1.09005 * 110.01656 * 33.60710 * 11 10 9 13 13 C 1.54266 * 110.03324 * 272.16907 * 11 10 9 14 14 C 1.54887 * 104.19681 * 217.10586 * 13 11 10 15 15 C 1.54888 * 102.74777 * 37.93778 * 14 13 11 16 16 H 1.09001 * 110.59626 * 80.79780 * 15 14 13 17 17 C 1.52998 * 110.48740 * 203.38031 * 15 14 13 18 18 N 1.46907 * 109.47359 * 289.77996 * 17 15 14 19 19 C 1.53867 * 110.03257 * 154.99923 * 11 10 9 20 20 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47318 * 299.99483 * 9 7 2 22 22 H 1.09000 * 109.47161 * 60.00114 * 9 7 2 23 23 H 1.00896 * 111.00594 * 303.95433 * 10 9 7 24 24 H 1.09006 * 110.48394 * 335.78278 * 13 11 10 25 25 H 1.09000 * 110.48778 * 98.42411 * 13 11 10 26 26 H 1.09008 * 110.75316 * 279.62402 * 14 13 11 27 27 H 1.08998 * 110.75732 * 156.26124 * 14 13 11 28 28 H 1.08998 * 109.47497 * 49.77328 * 17 15 14 29 29 H 1.08997 * 109.47453 * 169.77723 * 17 15 14 30 30 H 1.00888 * 111.00272 * 179.97438 * 18 17 15 31 31 H 1.00902 * 110.99767 * 303.95615 * 18 17 15 32 32 H 1.09002 * 110.03474 * 238.56728 * 19 11 10 33 33 H 1.09002 * 110.03545 * 0.02562 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6965 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2057 -3.6157 -0.0018 11 6 1.5054 -4.9071 -0.0012 12 1 0.5770 -4.8283 -0.5670 13 6 1.2068 -5.3457 1.4474 14 6 1.4060 -6.8816 1.4279 15 6 2.6220 -7.0566 0.4846 16 1 3.5527 -6.8675 1.0197 17 6 2.6309 -8.4608 -0.1227 18 7 2.9572 -9.4432 0.9197 19 6 2.4051 -5.9948 -0.6133 20 1 -0.4849 0.8400 0.0004 21 1 0.6248 -2.5571 0.8897 22 1 0.6240 -2.5567 -0.8903 23 1 2.8400 -3.5483 -0.7835 24 1 1.9078 -4.8789 2.1394 25 1 0.1804 -5.0975 1.7173 26 1 0.5262 -7.3800 1.0206 27 1 1.6347 -7.2542 2.4263 28 1 1.6476 -8.6838 -0.5369 29 1 3.3783 -8.5096 -0.9146 30 1 2.9689 -10.3793 0.5435 31 1 3.8353 -9.2207 1.3641 32 1 1.9131 -6.4447 -1.4757 33 1 3.3616 -5.5647 -0.9104 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724031522.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:26 Heat of formation + Delta-G solvation = -21.835566 kcal Electronic energy + Delta-G solvation = -12617.346896 eV Core-core repulsion = 10483.624728 eV Total energy + Delta-G solvation = -2133.722168 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.48321 -35.09323 -33.27924 -31.77114 -28.68284 -27.77628 -25.22400 -23.15088 -21.61051 -19.93078 -19.31975 -16.33052 -15.94375 -15.42160 -14.55514 -14.50470 -14.21723 -14.06948 -13.23786 -13.03045 -12.26830 -11.90056 -11.42901 -11.25302 -10.78998 -10.73062 -10.60831 -10.57177 -10.49372 -10.30149 -10.09590 -9.76350 -9.10624 -8.76622 -8.44396 -7.21896 -5.99642 -4.01574 3.35513 3.39190 3.42447 4.42453 4.46540 4.88953 4.93914 5.11187 5.31966 5.36241 5.45934 5.65532 5.80580 5.84104 5.98204 6.05194 6.10851 6.23228 6.39044 6.48218 6.58758 6.69732 6.88083 7.01435 7.29957 7.36520 7.48262 7.83797 8.19379 8.47347 8.69304 9.08014 9.63189 11.11503 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.088102 B = 0.006141 C = 0.005996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 317.738460 B = 4558.351765 C = 4668.952316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.899 3.101 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.514 4.514 8 H 0.061 0.939 9 C 0.194 3.806 10 N -0.684 5.684 11 C 0.082 3.918 12 H 0.035 0.965 13 C -0.114 4.114 14 C -0.104 4.104 15 C -0.086 4.086 16 H 0.072 0.928 17 C 0.068 3.932 18 N -0.850 5.850 19 C -0.119 4.119 20 H 0.261 0.739 21 H 0.028 0.972 22 H -0.016 1.016 23 H 0.326 0.674 24 H 0.075 0.925 25 H 0.056 0.944 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.070 0.930 29 H 0.022 0.978 30 H 0.337 0.663 31 H 0.339 0.661 32 H 0.057 0.943 33 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.613 -14.859 -0.344 15.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.553 4.553 8 H 0.079 0.921 9 C 0.067 3.933 10 N -0.315 5.315 11 C -0.029 4.029 12 H 0.053 0.947 13 C -0.152 4.152 14 C -0.142 4.142 15 C -0.105 4.105 16 H 0.090 0.910 17 C -0.063 4.063 18 N -0.379 5.379 19 C -0.158 4.158 20 H 0.071 0.929 21 H 0.046 0.954 22 H 0.002 0.998 23 H 0.144 0.856 24 H 0.094 0.906 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.040 0.960 30 H 0.148 0.852 31 H 0.151 0.849 32 H 0.076 0.924 33 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.854 -14.456 0.680 14.976 hybrid contribution 0.853 0.751 -1.560 1.930 sum 4.707 -13.706 -0.881 14.518 Atomic orbital electron populations 1.69957 1.06085 1.26828 1.50945 1.24992 0.94865 0.99326 0.95390 0.86549 0.79421 0.82726 0.78616 1.20309 1.21352 1.20168 1.21178 0.93448 0.90374 1.50308 0.92089 1.19580 0.90628 0.87444 0.95647 1.60838 1.20974 1.01139 1.48595 1.22082 0.95120 0.90212 0.95465 0.94667 1.22436 1.01195 0.94267 0.97329 1.22391 0.96802 0.95986 0.99009 1.21920 0.99480 0.92525 0.96596 0.90971 1.21898 1.00120 0.92097 0.92147 1.58688 1.40032 1.05348 1.33846 1.22381 1.00108 0.95946 0.97351 0.92898 0.95407 0.99788 0.85643 0.90619 0.92527 0.92203 0.91785 0.91152 0.95953 0.85162 0.84877 0.92375 0.91423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.37 13.29 55.43 0.74 -26.63 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 22.02 29.54 -169.99 -5.02 16.99 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.51 -14.92 9.32 -34.44 -0.32 -15.24 16 8 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 9 C 0.19 5.24 5.27 -4.97 -0.03 5.21 16 10 N -0.68 -15.12 6.25 -106.80 -0.67 -15.79 16 11 C 0.08 1.51 3.25 -66.60 -0.22 1.30 16 12 H 0.04 0.70 7.81 -51.93 -0.41 0.29 16 13 C -0.11 -1.97 6.49 -25.07 -0.16 -2.13 16 14 C -0.10 -1.46 6.22 -24.74 -0.15 -1.61 16 15 C -0.09 -1.12 3.03 -88.96 -0.27 -1.38 16 16 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 17 C 0.07 0.73 6.07 -3.82 -0.02 0.71 16 18 N -0.85 -8.10 9.51 -10.37 -0.10 -8.20 16 19 C -0.12 -1.74 6.05 -25.62 -0.16 -1.90 16 20 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 21 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 22 H -0.02 -0.45 8.07 -51.93 -0.42 -0.87 16 23 H 0.33 6.87 8.00 -39.29 -0.31 6.56 16 24 H 0.08 1.42 8.05 -51.93 -0.42 1.00 16 25 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.06 0.82 7.97 -51.92 -0.41 0.41 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.07 0.77 8.02 -51.93 -0.42 0.36 16 29 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 30 H 0.34 2.55 9.08 -39.30 -0.36 2.19 16 31 H 0.34 2.91 8.99 -39.29 -0.35 2.56 16 32 H 0.06 0.78 7.84 -51.93 -0.41 0.37 16 33 H 0.07 0.99 7.47 -51.93 -0.39 0.60 16 LS Contribution 269.19 15.07 4.06 4.06 Total: -1.00 -30.50 269.19 -7.97 -38.47 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -5.55 Total: 4.65 kcal Atomic # 6 Polarization: -12.11 SS G_CDS: -1.42 Total: -13.54 kcal Atomic # 7 Polarization: -50.59 SS G_CDS: -0.03 Total: -50.62 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -30.50 -7.97 -38.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724031522.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.631 kcal (2) G-P(sol) polarization free energy of solvation -30.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds