Wall clock time and date at job start Mon Mar 30 2020 02:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00235 * 2 1 4 4 H 1.48495 * 109.47776 * 240.00080 * 3 2 1 5 5 H 1.48503 * 109.46851 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47028 * 119.99683 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99394 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.46577 * 179.97438 * 9 7 2 11 11 C 1.46905 * 110.99800 * 179.97438 * 10 9 7 12 12 H 1.09005 * 110.01656 * 33.60710 * 11 10 9 13 13 C 1.54266 * 110.03324 * 272.16907 * 11 10 9 14 14 C 1.54887 * 104.19681 * 217.10586 * 13 11 10 15 15 C 1.54888 * 102.74777 * 37.93778 * 14 13 11 16 16 H 1.09001 * 110.59626 * 80.79780 * 15 14 13 17 17 C 1.52998 * 110.48740 * 203.38031 * 15 14 13 18 18 N 1.46907 * 109.47359 * 289.77996 * 17 15 14 19 19 C 1.53867 * 110.03257 * 154.99923 * 11 10 9 20 20 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47318 * 299.99483 * 9 7 2 22 22 H 1.09000 * 109.47161 * 60.00114 * 9 7 2 23 23 H 1.00896 * 111.00594 * 303.95433 * 10 9 7 24 24 H 1.09006 * 110.48394 * 335.78278 * 13 11 10 25 25 H 1.09000 * 110.48778 * 98.42411 * 13 11 10 26 26 H 1.09008 * 110.75316 * 279.62402 * 14 13 11 27 27 H 1.08998 * 110.75732 * 156.26124 * 14 13 11 28 28 H 1.08998 * 109.47497 * 49.77328 * 17 15 14 29 29 H 1.08997 * 109.47453 * 169.77723 * 17 15 14 30 30 H 1.00888 * 111.00272 * 179.97438 * 18 17 15 31 31 H 1.00902 * 110.99767 * 303.95615 * 18 17 15 32 32 H 1.09002 * 110.03474 * 238.56728 * 19 11 10 33 33 H 1.09002 * 110.03545 * 0.02562 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6965 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2057 -3.6157 -0.0018 11 6 1.5054 -4.9071 -0.0012 12 1 0.5770 -4.8283 -0.5670 13 6 1.2068 -5.3457 1.4474 14 6 1.4060 -6.8816 1.4279 15 6 2.6220 -7.0566 0.4846 16 1 3.5527 -6.8675 1.0197 17 6 2.6309 -8.4608 -0.1227 18 7 2.9572 -9.4432 0.9197 19 6 2.4051 -5.9948 -0.6133 20 1 -0.4849 0.8400 0.0004 21 1 0.6248 -2.5571 0.8897 22 1 0.6240 -2.5567 -0.8903 23 1 2.8400 -3.5483 -0.7835 24 1 1.9078 -4.8789 2.1394 25 1 0.1804 -5.0975 1.7173 26 1 0.5262 -7.3800 1.0206 27 1 1.6347 -7.2542 2.4263 28 1 1.6476 -8.6838 -0.5369 29 1 3.3783 -8.5096 -0.9146 30 1 2.9689 -10.3793 0.5435 31 1 3.8353 -9.2207 1.3641 32 1 1.9131 -6.4447 -1.4757 33 1 3.3616 -5.5647 -0.9104 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724031522.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:26 Heat of formation + Delta-G solvation = -44.800704 kcal Electronic energy + Delta-G solvation = -12618.342739 eV Core-core repulsion = 10483.624728 eV Total energy + Delta-G solvation = -2134.718011 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.78660 -36.56342 -34.94082 -33.51365 -29.89921 -29.48838 -26.99500 -24.20517 -23.70146 -21.12353 -20.72553 -18.50903 -16.92277 -16.84598 -16.43056 -15.92324 -15.43127 -15.22586 -14.79267 -14.36785 -14.25237 -13.48270 -13.19910 -12.79963 -12.64920 -12.30870 -12.16757 -11.88109 -11.72945 -11.68175 -11.64299 -11.38566 -11.20321 -10.66333 -9.49976 -9.10896 -8.23219 -6.35279 1.40408 1.44632 1.52667 2.39654 3.09753 3.52957 3.58100 3.73610 3.92835 4.09113 4.42202 4.53392 4.58039 4.67289 4.75053 4.80838 4.89315 5.03138 5.05625 5.08250 5.22423 5.26622 5.36580 5.38843 5.57745 5.64092 6.03486 6.30015 6.47429 6.68412 6.75022 6.90633 7.36106 8.88454 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.088102 B = 0.006141 C = 0.005996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 317.738460 B = 4558.351765 C = 4668.952316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.000 4.000 3 Si 0.976 3.024 4 H -0.265 1.265 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.538 4.538 8 H 0.065 0.935 9 C 0.210 3.790 10 N -0.682 5.682 11 C 0.074 3.926 12 H 0.017 0.983 13 C -0.115 4.115 14 C -0.092 4.092 15 C -0.079 4.079 16 H 0.072 0.928 17 C 0.075 3.925 18 N -0.857 5.857 19 C -0.111 4.111 20 H 0.265 0.735 21 H -0.004 1.004 22 H -0.044 1.044 23 H 0.333 0.667 24 H 0.058 0.942 25 H 0.042 0.958 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.034 0.966 30 H 0.350 0.650 31 H 0.345 0.655 32 H 0.074 0.926 33 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.096 -15.605 -0.595 16.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.198 4.198 3 Si 0.800 3.200 4 H -0.189 1.189 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.577 4.577 8 H 0.083 0.917 9 C 0.082 3.918 10 N -0.313 5.313 11 C -0.036 4.036 12 H 0.036 0.964 13 C -0.154 4.154 14 C -0.130 4.130 15 C -0.098 4.098 16 H 0.091 0.909 17 C -0.056 4.056 18 N -0.388 5.388 19 C -0.149 4.149 20 H 0.074 0.926 21 H 0.014 0.986 22 H -0.026 1.026 23 H 0.151 0.849 24 H 0.077 0.923 25 H 0.061 0.939 26 H 0.085 0.915 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.052 0.948 30 H 0.163 0.837 31 H 0.158 0.842 32 H 0.093 0.907 33 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.353 -15.239 0.426 16.158 hybrid contribution 0.349 0.941 -1.463 1.774 sum 5.702 -14.298 -1.037 15.428 Atomic orbital electron populations 1.70097 1.07931 1.28110 1.51436 1.26001 0.95797 1.03535 0.94454 0.85341 0.78071 0.77392 0.79212 1.18942 1.20719 1.19298 1.21545 0.93828 0.91467 1.50821 0.91668 1.19203 0.90643 0.89149 0.92777 1.60744 1.20207 1.01397 1.48936 1.22254 0.95121 0.89749 0.96493 0.96449 1.22406 0.99857 0.97025 0.96065 1.22311 0.97757 0.92926 0.99994 1.21854 0.98745 0.93570 0.95599 0.90932 1.21753 1.00636 0.90715 0.92483 1.58639 1.40608 1.05889 1.33618 1.22304 0.99326 0.95030 0.98259 0.92588 0.98553 1.02628 0.84866 0.92279 0.93924 0.91524 0.90949 0.91146 0.94760 0.83714 0.84189 0.90716 0.91072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.02 13.29 21.45 0.28 -57.73 16 2 C 0.00 0.01 5.46 84.66 0.46 0.48 16 3 Si 0.98 45.01 29.54 68.60 2.03 47.04 16 4 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 6 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.54 -31.69 9.32 25.60 0.24 -31.45 16 8 H 0.07 3.70 7.81 -2.91 -0.02 3.67 16 9 C 0.21 11.81 5.27 85.56 0.45 12.26 16 10 N -0.68 -30.70 6.25 -491.81 -3.08 -33.78 16 11 C 0.07 2.76 3.25 45.64 0.15 2.91 16 12 H 0.02 0.71 7.81 -2.38 -0.02 0.69 16 13 C -0.12 -4.04 6.49 31.67 0.21 -3.84 16 14 C -0.09 -2.46 6.22 31.88 0.20 -2.26 16 15 C -0.08 -1.86 3.03 -9.72 -0.03 -1.89 16 16 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 17 C 0.07 1.38 6.07 86.30 0.52 1.91 16 18 N -0.86 -13.81 9.51 -186.71 -1.78 -15.58 16 19 C -0.11 -3.07 6.05 31.32 0.19 -2.88 16 20 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 21 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 22 H -0.04 -2.66 8.07 -2.39 -0.02 -2.68 16 23 H 0.33 14.08 8.00 -89.70 -0.72 13.36 16 24 H 0.06 2.26 8.05 -2.38 -0.02 2.24 16 25 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.07 1.71 7.97 -2.38 -0.02 1.69 16 27 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.07 1.33 8.02 -2.39 -0.02 1.31 16 29 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.35 4.25 9.08 -89.70 -0.81 3.43 16 31 H 0.35 4.94 8.99 -89.69 -0.81 4.13 16 32 H 0.07 1.84 7.84 -2.39 -0.02 1.82 16 33 H 0.07 1.94 7.47 -2.39 -0.02 1.93 16 Total: -1.00 -65.86 269.19 -1.39 -67.25 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: -1.24 Total: 17.55 kcal Atomic # 6 Polarization: -27.14 SS G_CDS: 2.39 Total: -24.75 kcal Atomic # 7 Polarization: -102.53 SS G_CDS: -4.57 Total: -107.09 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -65.86 -1.39 -67.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724031522.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.450 kcal (2) G-P(sol) polarization free energy of solvation -65.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds