Wall clock time and date at job start Mon Mar 30 2020 02:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99801 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99661 * 359.97438 * 7 2 1 10 10 N 1.46904 * 109.46907 * 179.97438 * 9 7 2 11 11 C 1.44299 * 110.99645 * 66.04828 * 10 9 7 12 12 C 1.53986 * 108.31375 * 221.34845 * 11 10 9 13 13 C 1.45878 * 112.66409 * 278.60130 * 12 11 10 14 14 C 1.54515 * 111.67004 * 61.50018 * 13 12 11 15 15 H 1.09002 * 109.57779 * 42.57632 * 14 13 12 16 16 N 1.46905 * 109.57259 * 162.81837 * 14 13 12 17 17 C 1.50536 * 108.86553 * 282.75476 * 14 13 12 18 18 C 1.47942 * 110.99956 * 193.46400 * 10 9 7 19 19 H 0.97001 * 119.99697 * 179.97438 * 1 2 3 20 20 H 1.09002 * 109.47575 * 299.99992 * 9 7 2 21 21 H 1.09000 * 109.47392 * 60.00390 * 9 7 2 22 22 H 1.08993 * 109.69701 * 341.05347 * 11 10 9 23 23 H 1.09000 * 109.69854 * 101.64652 * 11 10 9 24 24 H 1.08994 * 108.84319 * 39.42425 * 12 11 10 25 25 H 1.09001 * 108.84548 * 157.78250 * 12 11 10 26 26 H 1.09003 * 109.03820 * 182.06848 * 13 12 11 27 27 H 1.09002 * 109.04202 * 301.00919 * 13 12 11 28 28 H 1.00902 * 110.99878 * 300.00290 * 16 14 13 29 29 H 1.00901 * 110.99638 * 63.95397 * 16 14 13 30 30 H 1.08999 * 108.79414 * 212.64370 * 17 14 13 31 31 H 1.08998 * 108.78789 * 330.86496 * 17 14 13 32 32 H 1.08999 * 108.71421 * 313.17907 * 18 10 9 33 33 H 1.09000 * 108.71530 * 71.19025 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 7 2.2058 -3.6157 0.0015 11 6 2.9584 -3.6527 1.2321 12 6 4.4255 -3.9744 0.8925 13 6 4.6562 -5.4007 0.6914 14 6 3.8288 -5.9514 -0.4916 15 1 3.8666 -5.2472 -1.3228 16 7 4.3794 -7.2450 -0.9174 17 6 2.4019 -6.1298 -0.0463 18 6 1.5291 -4.8916 -0.3190 19 1 -0.4850 -0.8401 -0.0004 20 1 0.6248 -2.5563 0.8920 21 1 0.6242 -2.5575 -0.8880 22 1 2.9001 -2.6837 1.7277 23 1 2.5549 -4.4255 1.8864 24 1 4.7012 -3.4415 -0.0174 25 1 5.0600 -3.6266 1.7077 26 1 5.7151 -5.5650 0.4918 27 1 4.3783 -5.9373 1.5986 28 1 5.3398 -7.1499 -1.2119 29 1 4.2923 -7.9337 -0.1851 30 1 1.9741 -6.9835 -0.5719 31 1 2.3915 -6.3379 1.0236 32 1 0.6207 -4.9656 0.2789 33 1 1.2512 -4.8851 -1.3730 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885294015.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:34 Heat of formation + Delta-G solvation = -11.194645 kcal Electronic energy + Delta-G solvation = -13265.069975 eV Core-core repulsion = 11131.809232 eV Total energy + Delta-G solvation = -2133.260743 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.83932 -35.37740 -32.82896 -32.30049 -29.95824 -26.57049 -24.95907 -23.60806 -21.94547 -20.14124 -19.13848 -16.80740 -15.88180 -15.57575 -14.58289 -14.30348 -13.89891 -13.65404 -13.18116 -12.95128 -12.61818 -12.25841 -11.44689 -11.04589 -10.97754 -10.84967 -10.71911 -10.51245 -10.35157 -10.19879 -10.09649 -9.85084 -8.64258 -8.55755 -8.35212 -7.17503 -6.34406 -4.03175 3.45378 3.48636 3.64487 4.52633 4.63959 4.83735 4.92965 5.16733 5.40611 5.50114 5.55677 5.64337 5.76011 5.90503 6.10205 6.19534 6.25651 6.33293 6.36734 6.46633 6.60082 6.72436 6.83533 7.04890 7.16248 7.26190 7.51113 7.90754 8.14244 8.41759 8.62797 8.90123 9.67620 11.04341 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.055874 B = 0.008980 C = 0.008224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.006544 B = 3117.431023 C = 3403.750916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.013 3.987 3 Si 1.075 2.925 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.286 1.286 7 C -0.586 4.586 8 H 0.058 0.942 9 C 0.186 3.814 10 N -0.541 5.541 11 C 0.073 3.927 12 C -0.113 4.113 13 C -0.139 4.139 14 C 0.097 3.903 15 H 0.093 0.907 16 N -0.847 5.847 17 C -0.111 4.111 18 C 0.064 3.936 19 H 0.267 0.733 20 H -0.022 1.022 21 H 0.018 0.982 22 H 0.080 0.920 23 H 0.020 0.980 24 H 0.071 0.929 25 H 0.049 0.951 26 H 0.049 0.951 27 H 0.048 0.952 28 H 0.337 0.663 29 H 0.332 0.668 30 H 0.071 0.929 31 H 0.049 0.951 32 H 0.021 0.979 33 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.674 -10.782 1.644 13.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.191 4.191 3 Si 0.903 3.097 4 H -0.214 1.214 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.624 4.624 8 H 0.076 0.924 9 C 0.061 3.939 10 N -0.265 5.265 11 C -0.056 4.056 12 C -0.152 4.152 13 C -0.179 4.179 14 C -0.014 4.014 15 H 0.111 0.889 16 N -0.374 5.374 17 C -0.149 4.149 18 C -0.065 4.065 19 H 0.077 0.923 20 H -0.004 1.004 21 H 0.036 0.964 22 H 0.099 0.901 23 H 0.039 0.961 24 H 0.090 0.910 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.149 0.851 29 H 0.144 0.856 30 H 0.089 0.911 31 H 0.068 0.932 32 H 0.039 0.961 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.225 -9.052 0.719 11.605 hybrid contribution 0.260 -1.734 1.463 2.283 sum 7.485 -10.786 2.182 13.309 Atomic orbital electron populations 1.70765 1.06914 1.30407 1.47200 1.25850 0.96498 1.02701 0.94024 0.83462 0.74554 0.74916 0.76771 1.21441 1.21484 1.21133 1.22015 0.94887 0.90897 1.54631 0.92384 1.19833 0.90676 0.88827 0.94604 1.60736 1.28870 1.02654 1.34276 1.21634 0.92562 1.00641 0.90729 1.20426 0.97474 0.95342 1.01939 1.21377 0.99173 0.98333 0.98994 1.21227 0.93453 0.89944 0.96802 0.88851 1.59129 1.25013 1.09354 1.43879 1.21388 0.95165 0.98028 1.00302 1.22285 0.94511 0.89138 1.00527 0.92312 1.00395 0.96413 0.90143 0.96144 0.91008 0.93244 0.93208 0.93278 0.85086 0.85638 0.91090 0.93190 0.96059 0.91759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.20 13.65 55.43 0.76 -27.45 16 2 C 0.01 0.36 5.46 -17.82 -0.10 0.27 16 3 Si 1.07 25.57 29.90 -169.99 -5.08 20.49 16 4 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.59 -16.71 8.12 -34.44 -0.28 -16.99 16 8 H 0.06 1.66 7.61 -52.49 -0.40 1.26 16 9 C 0.19 4.89 3.89 -4.98 -0.02 4.87 16 10 N -0.54 -11.80 3.99 -236.08 -0.94 -12.74 16 11 C 0.07 1.46 5.00 -4.70 -0.02 1.44 16 12 C -0.11 -1.90 5.37 -29.59 -0.16 -2.06 16 13 C -0.14 -1.94 4.96 -29.31 -0.15 -2.09 16 14 C 0.10 1.40 2.95 -68.15 -0.20 1.20 16 15 H 0.09 1.60 7.79 -51.93 -0.40 1.19 16 16 N -0.85 -10.05 9.15 -5.04 -0.05 -10.09 16 17 C -0.11 -1.67 4.92 -27.48 -0.14 -1.81 16 18 C 0.06 1.19 5.37 -2.77 -0.01 1.17 16 19 H 0.27 8.20 7.22 -40.82 -0.29 7.91 16 20 H -0.02 -0.60 7.98 -51.93 -0.41 -1.01 16 21 H 0.02 0.50 7.90 -51.93 -0.41 0.08 16 22 H 0.08 1.81 6.73 -51.93 -0.35 1.46 16 23 H 0.02 0.38 6.79 -51.93 -0.35 0.03 16 24 H 0.07 1.34 8.08 -51.93 -0.42 0.92 16 25 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.05 0.62 8.07 -51.93 -0.42 0.20 16 27 H 0.05 0.66 7.59 -51.93 -0.39 0.26 16 28 H 0.34 3.49 8.99 -39.29 -0.35 3.14 16 29 H 0.33 3.43 8.98 -39.29 -0.35 3.07 16 30 H 0.07 1.00 7.96 -51.93 -0.41 0.59 16 31 H 0.05 0.73 6.66 -51.93 -0.35 0.39 16 32 H 0.02 0.40 8.02 -51.93 -0.42 -0.02 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 256.72 15.07 3.87 3.87 Total: -1.00 -30.13 256.72 -7.90 -38.04 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -5.38 Total: 1.89 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: -1.08 Total: -14.00 kcal Atomic # 7 Polarization: -50.05 SS G_CDS: -0.23 Total: -50.28 kcal Atomic # 14 Polarization: 25.57 SS G_CDS: -5.08 Total: 20.49 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -30.13 -7.90 -38.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885294015.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.841 kcal (2) G-P(sol) polarization free energy of solvation -30.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds