Wall clock time and date at job start Mon Mar 30 2020 02:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99801 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99661 * 359.97438 * 7 2 1 10 10 N 1.46904 * 109.46907 * 179.97438 * 9 7 2 11 11 C 1.44299 * 110.99645 * 66.04828 * 10 9 7 12 12 C 1.53986 * 108.31375 * 221.34845 * 11 10 9 13 13 C 1.45878 * 112.66409 * 278.60130 * 12 11 10 14 14 C 1.54515 * 111.67004 * 61.50018 * 13 12 11 15 15 H 1.09002 * 109.57779 * 42.57632 * 14 13 12 16 16 N 1.46905 * 109.57259 * 162.81837 * 14 13 12 17 17 C 1.50536 * 108.86553 * 282.75476 * 14 13 12 18 18 C 1.47942 * 110.99956 * 193.46400 * 10 9 7 19 19 H 0.97001 * 119.99697 * 179.97438 * 1 2 3 20 20 H 1.09002 * 109.47575 * 299.99992 * 9 7 2 21 21 H 1.09000 * 109.47392 * 60.00390 * 9 7 2 22 22 H 1.08993 * 109.69701 * 341.05347 * 11 10 9 23 23 H 1.09000 * 109.69854 * 101.64652 * 11 10 9 24 24 H 1.08994 * 108.84319 * 39.42425 * 12 11 10 25 25 H 1.09001 * 108.84548 * 157.78250 * 12 11 10 26 26 H 1.09003 * 109.03820 * 182.06848 * 13 12 11 27 27 H 1.09002 * 109.04202 * 301.00919 * 13 12 11 28 28 H 1.00902 * 110.99878 * 300.00290 * 16 14 13 29 29 H 1.00901 * 110.99638 * 63.95397 * 16 14 13 30 30 H 1.08999 * 108.79414 * 212.64370 * 17 14 13 31 31 H 1.08998 * 108.78789 * 330.86496 * 17 14 13 32 32 H 1.08999 * 108.71421 * 313.17907 * 18 10 9 33 33 H 1.09000 * 108.71530 * 71.19025 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 7 2.2058 -3.6157 0.0015 11 6 2.9584 -3.6527 1.2321 12 6 4.4255 -3.9744 0.8925 13 6 4.6562 -5.4007 0.6914 14 6 3.8288 -5.9514 -0.4916 15 1 3.8666 -5.2472 -1.3228 16 7 4.3794 -7.2450 -0.9174 17 6 2.4019 -6.1298 -0.0463 18 6 1.5291 -4.8916 -0.3190 19 1 -0.4850 -0.8401 -0.0004 20 1 0.6248 -2.5563 0.8920 21 1 0.6242 -2.5575 -0.8880 22 1 2.9001 -2.6837 1.7277 23 1 2.5549 -4.4255 1.8864 24 1 4.7012 -3.4415 -0.0174 25 1 5.0600 -3.6266 1.7077 26 1 5.7151 -5.5650 0.4918 27 1 4.3783 -5.9373 1.5986 28 1 5.3398 -7.1499 -1.2119 29 1 4.2923 -7.9337 -0.1851 30 1 1.9741 -6.9835 -0.5719 31 1 2.3915 -6.3379 1.0236 32 1 0.6207 -4.9656 0.2789 33 1 1.2512 -4.8851 -1.3730 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885294015.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:33 Heat of formation + Delta-G solvation = -33.427503 kcal Electronic energy + Delta-G solvation = -13266.034064 eV Core-core repulsion = 11131.809232 eV Total energy + Delta-G solvation = -2134.224832 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.27725 -36.95192 -34.82660 -33.70620 -31.36783 -28.40790 -26.64847 -25.08283 -23.90495 -21.39655 -20.64040 -18.94958 -17.28346 -16.97284 -15.90937 -15.82155 -15.66046 -15.24961 -14.70260 -14.46938 -14.12511 -14.04770 -13.16738 -13.04860 -12.59043 -12.30350 -12.29298 -12.01627 -11.92390 -11.73587 -11.58191 -11.37487 -10.78033 -10.58615 -9.54002 -8.99692 -8.67053 -6.39155 1.52446 1.61792 1.79761 2.54981 3.12060 3.16129 3.59641 3.74445 3.92876 4.10446 4.21331 4.30018 4.44555 4.57447 4.66682 4.75767 4.76383 4.86236 4.95572 5.08387 5.13551 5.16034 5.28614 5.37887 5.50130 5.82914 6.01593 6.29194 6.41432 6.53957 6.67646 6.69560 7.41553 8.69695 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.055874 B = 0.008980 C = 0.008224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.006544 B = 3117.431023 C = 3403.750916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.039 4.039 3 Si 1.124 2.876 4 H -0.273 1.273 5 H -0.268 1.268 6 H -0.283 1.283 7 C -0.594 4.594 8 H 0.056 0.944 9 C 0.197 3.803 10 N -0.545 5.545 11 C 0.072 3.928 12 C -0.103 4.103 13 C -0.134 4.134 14 C 0.103 3.897 15 H 0.064 0.936 16 N -0.844 5.844 17 C -0.100 4.100 18 C 0.061 3.939 19 H 0.252 0.748 20 H -0.046 1.046 21 H -0.006 1.006 22 H 0.048 0.952 23 H 0.035 0.965 24 H 0.050 0.950 25 H 0.066 0.934 26 H 0.073 0.927 27 H 0.064 0.936 28 H 0.349 0.651 29 H 0.346 0.654 30 H 0.085 0.915 31 H 0.061 0.939 32 H 0.015 0.985 33 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.646 -11.819 1.990 15.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.236 4.236 3 Si 0.944 3.056 4 H -0.199 1.199 5 H -0.193 1.193 6 H -0.208 1.208 7 C -0.632 4.632 8 H 0.074 0.926 9 C 0.070 3.930 10 N -0.270 5.270 11 C -0.057 4.057 12 C -0.141 4.141 13 C -0.174 4.174 14 C -0.009 4.009 15 H 0.082 0.918 16 N -0.373 5.373 17 C -0.138 4.138 18 C -0.067 4.067 19 H 0.062 0.938 20 H -0.028 1.028 21 H 0.012 0.988 22 H 0.066 0.934 23 H 0.053 0.947 24 H 0.068 0.932 25 H 0.084 0.916 26 H 0.092 0.908 27 H 0.082 0.918 28 H 0.162 0.838 29 H 0.159 0.841 30 H 0.104 0.896 31 H 0.079 0.921 32 H 0.034 0.966 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 9.217 -10.139 1.066 13.744 hybrid contribution -0.376 -1.486 1.351 2.044 sum 8.841 -11.626 2.417 14.804 Atomic orbital electron populations 1.70902 1.07978 1.29583 1.49283 1.27448 0.96521 1.06764 0.92884 0.82853 0.74116 0.70796 0.77787 1.19876 1.19300 1.20810 1.22299 0.94895 0.92027 1.54000 0.92603 1.19545 0.90776 0.90371 0.92284 1.60716 1.27861 1.02915 1.35501 1.21674 0.94595 0.99438 0.89950 1.20331 0.94970 0.97381 1.01457 1.21321 1.00586 0.96099 0.99370 1.20998 0.93219 0.90692 0.95944 0.91784 1.59008 1.25921 1.08137 1.44280 1.21302 0.95174 0.96122 1.01245 1.22383 0.95142 0.89250 0.99951 0.93842 1.02833 0.98753 0.93389 0.94680 0.93159 0.91571 0.90831 0.91761 0.83801 0.84136 0.89621 0.92056 0.96650 0.92498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.28 13.65 21.45 0.29 -58.98 16 2 C -0.04 -2.31 5.46 84.65 0.46 -1.85 16 3 Si 1.12 51.17 29.90 68.60 2.05 53.22 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 6 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 7 C -0.59 -34.66 8.12 25.60 0.21 -34.46 16 8 H 0.06 3.22 7.61 -2.91 -0.02 3.20 16 9 C 0.20 10.78 3.89 85.55 0.33 11.11 16 10 N -0.55 -24.20 3.99 -900.82 -3.60 -27.80 16 11 C 0.07 2.84 5.00 87.12 0.44 3.28 16 12 C -0.10 -3.27 5.37 28.74 0.15 -3.11 16 13 C -0.13 -3.31 4.96 28.93 0.14 -3.17 16 14 C 0.10 2.72 2.95 44.63 0.13 2.86 16 15 H 0.06 2.11 7.79 -2.39 -0.02 2.09 16 16 N -0.84 -17.20 9.15 -169.85 -1.55 -18.75 16 17 C -0.10 -2.82 4.92 30.11 0.15 -2.67 16 18 C 0.06 2.26 5.37 86.41 0.46 2.73 16 19 H 0.25 16.20 7.22 -92.71 -0.67 15.53 16 20 H -0.05 -2.68 7.98 -2.39 -0.02 -2.70 16 21 H -0.01 -0.33 7.90 -2.39 -0.02 -0.35 16 22 H 0.05 2.19 6.73 -2.39 -0.02 2.17 16 23 H 0.03 1.27 6.79 -2.39 -0.02 1.25 16 24 H 0.05 1.82 8.08 -2.39 -0.02 1.80 16 25 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.07 1.52 8.07 -2.39 -0.02 1.50 16 27 H 0.06 1.44 7.59 -2.39 -0.02 1.42 16 28 H 0.35 6.00 8.99 -89.69 -0.81 5.20 16 29 H 0.35 5.73 8.98 -89.69 -0.81 4.92 16 30 H 0.09 2.19 7.96 -2.39 -0.02 2.17 16 31 H 0.06 1.61 6.66 -2.39 -0.02 1.59 16 32 H 0.02 0.58 8.02 -2.39 -0.02 0.56 16 33 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -66.02 256.72 -0.75 -66.77 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -0.42 Total: 10.82 kcal Atomic # 6 Polarization: -27.76 SS G_CDS: 2.48 Total: -25.28 kcal Atomic # 7 Polarization: -100.68 SS G_CDS: -4.86 Total: -105.54 kcal Atomic # 14 Polarization: 51.17 SS G_CDS: 2.05 Total: 53.22 kcal Total: -66.02 -0.75 -66.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885294015.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.340 kcal (2) G-P(sol) polarization free energy of solvation -66.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds