Wall clock time and date at job start Mon Mar 30 2020 02:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 119.99774 * 2 1 4 4 H 1.48505 * 109.46954 * 239.99433 * 3 2 1 5 5 H 1.48501 * 109.47059 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47392 * 119.99764 * 3 2 1 7 7 C 1.37876 * 120.00312 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00392 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99994 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.47246 * 179.97438 * 9 7 2 11 11 C 1.48000 * 110.99752 * 66.04303 * 10 9 7 12 12 C 1.50446 * 112.82153 * 84.84410 * 11 10 9 13 13 C 1.54306 * 108.49701 * 93.73126 * 12 11 10 14 14 C 1.45877 * 112.18956 * 281.44886 * 13 12 11 15 15 H 1.08995 * 108.94469 * 300.42316 * 14 13 12 16 16 N 1.46903 * 108.93976 * 181.81055 * 14 13 12 17 17 C 1.54317 * 112.18165 * 61.12157 * 14 13 12 18 18 C 1.48000 * 110.99947 * 194.76299 * 10 9 7 19 19 H 0.96999 * 120.00430 * 0.02562 * 1 2 3 20 20 H 1.08998 * 109.47807 * 59.99044 * 9 7 2 21 21 H 1.09002 * 109.47047 * 299.99250 * 9 7 2 22 22 H 1.08998 * 108.81455 * 323.97258 * 11 10 9 23 23 H 1.09000 * 108.81176 * 205.69919 * 11 10 9 24 24 H 1.08998 * 109.63411 * 334.02472 * 12 11 10 25 25 H 1.08999 * 109.63052 * 213.43237 * 12 11 10 26 26 H 1.08995 * 108.93924 * 160.75288 * 13 12 11 27 27 H 1.08998 * 108.86585 * 42.09807 * 13 12 11 28 28 H 1.00903 * 110.99333 * 57.33652 * 16 14 13 29 29 H 1.00898 * 111.00272 * 181.28466 * 16 14 13 30 30 H 1.08993 * 109.63193 * 41.18024 * 17 14 13 31 31 H 1.08995 * 109.63665 * 161.77852 * 17 14 13 32 32 H 1.08998 * 108.81430 * 70.47570 * 18 10 9 33 33 H 1.08999 * 108.81144 * 312.20095 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2058 -3.6156 0.0005 11 6 2.9769 -3.6541 1.2632 12 6 2.2598 -4.3893 2.3627 13 6 2.7297 -5.8590 2.3563 14 6 2.0851 -6.6390 1.3056 15 1 1.0064 -6.6174 1.4601 16 7 2.5491 -8.0302 1.3917 17 6 2.4004 -6.0922 -0.1026 18 6 1.5349 -4.8870 -0.3516 19 1 -0.4851 0.8400 -0.0004 20 1 0.6247 -2.5571 -0.8895 21 1 0.6242 -2.5567 0.8904 22 1 3.1675 -2.6319 1.5900 23 1 3.9320 -4.1452 1.0770 24 1 1.1843 -4.3479 2.1901 25 1 2.4972 -3.9330 3.3237 26 1 2.4993 -6.3083 3.3223 27 1 3.8087 -5.8834 2.2036 28 1 2.3577 -8.4194 2.3027 29 1 2.1373 -8.5945 0.6637 30 1 3.4508 -5.8065 -0.1578 31 1 2.1863 -6.8572 -0.8489 32 1 1.2639 -4.8609 -1.4070 33 1 0.6246 -4.9798 0.2406 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885294016.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:35 Heat of formation + Delta-G solvation = -26.757084 kcal Electronic energy + Delta-G solvation = -13222.665030 eV Core-core repulsion = 11088.729450 eV Total energy + Delta-G solvation = -2133.935581 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.37496 -36.74821 -34.64329 -33.30648 -31.54615 -28.80092 -26.85935 -24.95518 -23.89054 -21.18965 -20.47123 -18.43707 -17.10226 -16.87653 -16.48122 -16.36918 -15.68073 -14.98130 -14.46554 -14.17676 -13.93741 -13.51142 -13.32445 -13.06440 -12.85093 -12.59658 -12.34863 -12.06361 -12.02050 -11.59336 -11.45514 -11.34430 -11.14561 -10.60891 -9.60978 -8.83736 -8.19210 -6.29915 1.41027 1.44628 1.52523 2.40734 3.12053 3.25731 3.44642 3.80232 3.93200 4.16806 4.29152 4.37871 4.47701 4.60133 4.74043 4.81988 4.89885 5.04703 5.08096 5.15079 5.21410 5.26181 5.30762 5.39982 5.48005 5.67561 6.09377 6.23201 6.41421 6.64847 6.72202 6.87442 7.39845 8.91169 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.070109 B = 0.008220 C = 0.007929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 399.279752 B = 3405.325853 C = 3530.609927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.000 4.000 3 Si 0.970 3.030 4 H -0.268 1.268 5 H -0.283 1.283 6 H -0.266 1.266 7 C -0.523 4.523 8 H 0.063 0.937 9 C 0.213 3.787 10 N -0.557 5.557 11 C 0.067 3.933 12 C -0.138 4.138 13 C -0.103 4.103 14 C 0.098 3.902 15 H 0.020 0.980 16 N -0.846 5.846 17 C -0.099 4.099 18 C 0.063 3.937 19 H 0.264 0.736 20 H -0.003 1.003 21 H -0.039 1.039 22 H 0.053 0.947 23 H 0.073 0.927 24 H 0.038 0.962 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.348 0.652 29 H 0.349 0.651 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.059 0.941 33 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.426 -12.550 3.837 13.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.197 4.197 3 Si 0.794 3.206 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.561 4.561 8 H 0.081 0.919 9 C 0.087 3.913 10 N -0.283 5.283 11 C -0.060 4.060 12 C -0.178 4.178 13 C -0.140 4.140 14 C -0.013 4.013 15 H 0.038 0.962 16 N -0.378 5.378 17 C -0.137 4.137 18 C -0.065 4.065 19 H 0.073 0.927 20 H 0.015 0.985 21 H -0.021 1.021 22 H 0.072 0.928 23 H 0.091 0.909 24 H 0.057 0.943 25 H 0.092 0.908 26 H 0.088 0.912 27 H 0.091 0.909 28 H 0.161 0.839 29 H 0.162 0.838 30 H 0.090 0.910 31 H 0.104 0.896 32 H 0.077 0.923 33 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges 5.324 -12.082 3.354 13.623 hybrid contribution -1.773 0.734 0.665 2.031 sum 3.552 -11.348 4.020 12.552 Atomic orbital electron populations 1.70084 1.07792 1.27948 1.51898 1.25934 0.95744 1.03241 0.94816 0.85427 0.78148 0.77825 0.79166 1.19331 1.20803 1.19131 1.21469 0.93632 0.91125 1.49898 0.91920 1.19276 0.90094 0.88955 0.92967 1.61879 1.29375 1.03477 1.33527 1.21759 0.96690 1.00072 0.87527 1.21777 0.99502 0.96665 0.99840 1.20470 1.01381 0.93492 0.98691 1.20234 0.95906 0.89730 0.95405 0.96201 1.58788 1.67295 1.02151 1.09565 1.21334 1.00497 0.95472 0.96380 1.21724 0.95458 0.89631 0.99660 0.92703 0.98534 1.02101 0.92839 0.90920 0.94300 0.90775 0.91164 0.90939 0.83863 0.83775 0.91014 0.89644 0.92275 0.96977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.50 13.29 21.45 0.28 -57.22 16 2 C 0.00 0.02 5.46 84.66 0.46 0.48 16 3 Si 0.97 44.94 29.54 68.60 2.03 46.97 16 4 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 6 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 7 C -0.52 -30.42 8.18 25.60 0.21 -30.21 16 8 H 0.06 3.57 7.38 -2.91 -0.02 3.55 16 9 C 0.21 11.80 4.64 85.55 0.40 12.19 16 10 N -0.56 -25.02 4.67 -904.83 -4.22 -29.25 16 11 C 0.07 2.64 4.95 85.27 0.42 3.06 16 12 C -0.14 -4.62 5.55 30.21 0.17 -4.45 16 13 C -0.10 -2.69 4.75 28.85 0.14 -2.56 16 14 C 0.10 2.49 2.76 43.18 0.12 2.61 16 15 H 0.02 0.54 7.52 -2.39 -0.02 0.52 16 16 N -0.85 -16.51 9.19 -175.99 -1.62 -18.13 16 17 C -0.10 -2.82 5.21 30.22 0.16 -2.67 16 18 C 0.06 2.35 4.92 85.27 0.42 2.77 16 19 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 20 H 0.00 -0.21 8.02 -2.39 -0.02 -0.23 16 21 H -0.04 -2.31 7.65 -2.39 -0.02 -2.33 16 22 H 0.05 2.38 6.55 -2.39 -0.02 2.36 16 23 H 0.07 2.57 6.58 -2.39 -0.02 2.56 16 24 H 0.04 1.48 6.61 -2.39 -0.02 1.46 16 25 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 26 H 0.07 1.58 8.10 -2.39 -0.02 1.56 16 27 H 0.07 1.90 7.51 -2.39 -0.02 1.89 16 28 H 0.35 5.57 8.94 -89.69 -0.80 4.77 16 29 H 0.35 5.71 8.86 -89.70 -0.80 4.91 16 30 H 0.07 2.20 7.08 -2.39 -0.02 2.18 16 31 H 0.09 2.07 7.98 -2.39 -0.02 2.05 16 32 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.01 0.47 6.48 -2.39 -0.02 0.45 16 Total: -1.00 -64.68 254.29 -1.54 -66.22 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -0.50 Total: 10.18 kcal Atomic # 6 Polarization: -21.26 SS G_CDS: 2.49 Total: -18.77 kcal Atomic # 7 Polarization: -99.03 SS G_CDS: -5.56 Total: -104.59 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -64.68 -1.54 -66.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885294016.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.461 kcal (2) G-P(sol) polarization free energy of solvation -64.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds