Wall clock time and date at job start Mon Mar 30 2020 01:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 110.01814 * 2 1 4 4 C 1.53889 * 110.02816 * 238.56585 * 2 1 3 5 5 C 1.54261 * 106.59465 * 240.71214 * 4 2 1 6 6 C 1.54889 * 104.19920 * 23.61190 * 5 4 2 7 7 H 1.08993 * 110.91599 * 80.44450 * 6 5 4 8 8 C 1.52998 * 110.75836 * 203.74113 * 6 5 4 9 9 H 1.09010 * 109.47071 * 53.32732 * 8 6 5 10 10 O 1.42903 * 109.47548 * 173.32643 * 8 6 5 11 11 C 1.50696 * 109.47188 * 293.33040 * 8 6 5 12 12 H 1.07995 * 120.00332 * 359.97438 * 11 8 6 13 13 C 1.37880 * 119.99983 * 180.02562 * 11 8 6 14 14 N 1.31517 * 120.00210 * 359.97438 * 13 11 8 15 15 Si 1.86800 * 120.00019 * 179.97438 * 13 11 8 16 16 H 1.48503 * 109.46845 * 269.99914 * 15 13 11 17 17 H 1.48503 * 109.47399 * 29.99403 * 15 13 11 18 18 H 1.48498 * 109.47295 * 150.00010 * 15 13 11 19 19 C 1.54263 * 110.03567 * 121.39845 * 2 1 3 20 20 H 1.08999 * 109.46406 * 298.59927 * 1 2 3 21 21 H 1.08995 * 109.47047 * 58.60144 * 1 2 3 22 22 H 1.09005 * 109.46608 * 178.60575 * 1 2 3 23 23 H 1.09002 * 109.47430 * 181.39412 * 3 2 1 24 24 H 1.09003 * 109.47458 * 301.40330 * 3 2 1 25 25 H 1.09001 * 109.46693 * 61.39629 * 3 2 1 26 26 H 1.08991 * 110.03117 * 359.97438 * 4 2 1 27 27 H 1.08992 * 110.03098 * 121.38233 * 4 2 1 28 28 H 1.08998 * 110.48999 * 264.92941 * 5 4 2 29 29 H 1.09002 * 110.48820 * 142.28871 * 5 4 2 30 30 H 0.96698 * 113.99679 * 60.00113 * 10 8 6 31 31 H 0.97000 * 119.99462 * 359.97438 * 14 13 11 32 32 H 1.09001 * 110.48516 * 336.99428 * 19 2 1 33 33 H 1.09000 * 110.48542 * 214.34664 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0538 1.4375 0.0000 4 6 2.0571 -0.7540 -1.2336 5 6 2.8874 -1.9409 -0.7030 6 6 2.3281 -2.1899 0.7197 7 1 1.4037 -2.7659 0.6791 8 6 3.3661 -2.8956 1.5946 9 1 4.3000 -2.3335 1.5754 10 8 2.8841 -2.9726 2.9376 11 6 3.6061 -4.2865 1.0665 12 1 3.0715 -4.6327 0.1944 13 6 4.5076 -5.1174 1.6974 14 7 5.1583 -4.6961 2.7597 15 14 4.8045 -6.8417 1.0432 16 1 3.8591 -7.7864 1.6906 17 1 4.5911 -6.8573 -0.4264 18 1 6.1993 -7.2524 1.3452 19 6 2.0585 -0.7550 1.2370 20 1 -0.3632 0.4919 0.9023 21 1 -0.3633 0.5354 -0.8771 22 1 -0.3633 -1.0274 -0.0250 23 1 3.1434 1.4273 -0.0250 24 1 1.6750 1.9623 -0.8771 25 1 1.7158 1.9473 0.9023 26 1 1.2229 -1.1202 -1.8319 27 1 2.6859 -0.0958 -1.8330 28 1 3.9440 -1.6769 -0.6568 29 1 2.7401 -2.8202 -1.3301 30 1 2.0541 -3.4601 3.0302 31 1 5.0044 -3.8005 3.0992 32 1 1.3062 -0.7689 2.0257 33 1 2.9812 -0.2996 1.5965 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535876551.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:07 Heat of formation + Delta-G solvation = -92.121857 kcal Electronic energy + Delta-G solvation = -13307.785057 eV Core-core repulsion = 11138.722296 eV Total energy + Delta-G solvation = -2169.062761 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.81752 -35.70098 -32.06685 -31.74797 -28.47041 -27.13492 -26.25446 -23.52985 -21.94850 -19.44065 -18.37408 -17.09654 -15.35841 -14.98114 -13.96827 -13.73416 -13.69167 -13.15943 -13.01483 -12.68746 -12.37691 -11.88040 -11.73318 -11.32554 -11.05495 -10.72904 -10.39658 -10.23806 -10.16437 -10.08704 -10.07338 -9.89783 -9.82614 -8.98062 -8.40597 -7.89755 -6.27972 -4.10232 3.44096 3.47299 3.63124 4.55347 4.94159 5.06014 5.07320 5.40356 5.65679 5.72412 5.75586 5.78645 5.79450 5.99050 6.00142 6.14301 6.18866 6.22270 6.32794 6.36473 6.51933 6.59569 6.61359 6.80348 6.83882 6.97487 7.03505 7.63747 8.11960 8.44247 8.93555 9.19613 9.75120 11.11359 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.056700 B = 0.009346 C = 0.008757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.707453 B = 2995.212830 C = 3196.691351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.075 4.075 3 C -0.136 4.136 4 C -0.116 4.116 5 C -0.102 4.102 6 C -0.104 4.104 7 H 0.060 0.940 8 C 0.218 3.782 9 H 0.046 0.954 10 O -0.584 6.584 11 C -0.642 4.642 12 H 0.049 0.951 13 C 0.031 3.969 14 N -0.897 5.897 15 Si 1.067 2.933 16 H -0.288 1.288 17 H -0.290 1.290 18 H -0.285 1.285 19 C -0.104 4.104 20 H 0.049 0.951 21 H 0.047 0.953 22 H 0.054 0.946 23 H 0.054 0.946 24 H 0.047 0.953 25 H 0.050 0.950 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.352 0.648 31 H 0.283 0.717 32 H 0.057 0.943 33 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.112 7.815 -5.994 12.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.075 4.075 3 C -0.193 4.193 4 C -0.154 4.154 5 C -0.140 4.140 6 C -0.123 4.123 7 H 0.079 0.921 8 C 0.161 3.839 9 H 0.064 0.936 10 O -0.388 6.388 11 C -0.680 4.680 12 H 0.067 0.933 13 C -0.177 4.177 14 N -0.532 5.532 15 Si 0.895 3.105 16 H -0.215 1.215 17 H -0.216 1.216 18 H -0.210 1.210 19 C -0.141 4.141 20 H 0.069 0.931 21 H 0.066 0.934 22 H 0.073 0.927 23 H 0.073 0.927 24 H 0.067 0.933 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.196 0.804 31 H 0.095 0.905 32 H 0.076 0.924 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.689 6.814 -5.626 10.509 hybrid contribution -1.406 1.044 -0.519 1.827 sum -7.095 7.858 -6.144 12.241 Atomic orbital electron populations 1.21876 0.95040 1.01472 1.00742 1.21237 0.94997 0.94934 0.96320 1.21894 1.00831 0.95773 1.00816 1.22326 0.99178 0.97389 0.96518 1.22144 0.98945 0.96446 0.96480 1.22693 0.99700 0.94447 0.95448 0.92108 1.19576 0.90853 0.94787 0.78640 0.93626 1.86462 1.43035 1.77816 1.31523 1.22499 1.28812 1.00290 1.16381 0.93303 1.25768 0.92757 1.04467 0.94717 1.70605 1.39981 1.21483 1.21123 0.83605 0.76585 0.75061 0.75206 1.21518 1.21588 1.21039 1.22460 1.00134 0.96009 0.95504 0.93143 0.93375 0.92666 0.92734 0.93349 0.93107 0.92527 0.92588 0.92081 0.92056 0.80373 0.90474 0.92446 0.92116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.77 8.14 37.16 0.30 -1.46 16 2 C -0.07 -1.11 0.94 -153.39 -0.14 -1.26 16 3 C -0.14 -1.78 8.15 37.16 0.30 -1.48 16 4 C -0.12 -1.79 6.11 -25.61 -0.16 -1.95 16 5 C -0.10 -1.94 5.80 -25.08 -0.15 -2.08 16 6 C -0.10 -2.14 2.57 -88.63 -0.23 -2.37 16 7 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 8 C 0.22 5.53 1.96 -27.89 -0.05 5.47 16 9 H 0.05 1.27 7.96 -51.92 -0.41 0.86 16 10 O -0.58 -14.91 11.71 -35.23 -0.41 -15.33 16 11 C -0.64 -17.91 8.34 -34.44 -0.29 -18.20 16 12 H 0.05 1.35 7.67 -52.49 -0.40 0.95 16 13 C 0.03 0.90 5.40 -17.82 -0.10 0.80 16 14 N -0.90 -27.77 13.53 55.43 0.75 -27.02 16 15 Si 1.07 25.40 29.90 -169.99 -5.08 20.31 16 16 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 C -0.10 -1.85 5.06 -25.07 -0.13 -1.98 16 20 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 21 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 22 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.82 7.67 -51.93 -0.40 0.42 16 27 H 0.06 0.79 7.67 -51.93 -0.40 0.40 16 28 H 0.06 1.21 8.01 -51.93 -0.42 0.79 16 29 H 0.06 1.19 8.11 -51.93 -0.42 0.77 16 30 H 0.35 8.08 9.04 45.56 0.41 8.49 16 31 H 0.28 8.95 6.47 -40.82 -0.26 8.68 16 32 H 0.06 1.01 7.84 -51.93 -0.41 0.60 16 33 H 0.06 1.15 7.76 -51.93 -0.40 0.74 16 LS Contribution 264.14 15.07 3.98 3.98 Total: -1.00 -30.19 264.14 -6.27 -36.45 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -4.87 Total: 6.10 kcal Atomic # 6 Polarization: -23.86 SS G_CDS: -0.63 Total: -24.49 kcal Atomic # 7 Polarization: -27.77 SS G_CDS: 0.75 Total: -27.02 kcal Atomic # 8 Polarization: -14.91 SS G_CDS: -0.41 Total: -15.33 kcal Atomic # 14 Polarization: 25.40 SS G_CDS: -5.08 Total: 20.31 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -30.19 -6.27 -36.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535876551.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.669 kcal (2) G-P(sol) polarization free energy of solvation -30.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds