Wall clock time and date at job start Mon Mar 30 2020 01:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 110.01814 * 2 1 4 4 C 1.53889 * 110.02816 * 238.56585 * 2 1 3 5 5 C 1.54261 * 106.59465 * 240.71214 * 4 2 1 6 6 C 1.54889 * 104.19920 * 23.61190 * 5 4 2 7 7 H 1.08993 * 110.91599 * 80.44450 * 6 5 4 8 8 C 1.52998 * 110.75836 * 203.74113 * 6 5 4 9 9 H 1.09010 * 109.47071 * 53.32732 * 8 6 5 10 10 O 1.42903 * 109.47548 * 173.32643 * 8 6 5 11 11 C 1.50696 * 109.47188 * 293.33040 * 8 6 5 12 12 H 1.07995 * 120.00332 * 359.97438 * 11 8 6 13 13 C 1.37880 * 119.99983 * 180.02562 * 11 8 6 14 14 N 1.31517 * 120.00210 * 359.97438 * 13 11 8 15 15 Si 1.86800 * 120.00019 * 179.97438 * 13 11 8 16 16 H 1.48503 * 109.46845 * 269.99914 * 15 13 11 17 17 H 1.48503 * 109.47399 * 29.99403 * 15 13 11 18 18 H 1.48498 * 109.47295 * 150.00010 * 15 13 11 19 19 C 1.54263 * 110.03567 * 121.39845 * 2 1 3 20 20 H 1.08999 * 109.46406 * 298.59927 * 1 2 3 21 21 H 1.08995 * 109.47047 * 58.60144 * 1 2 3 22 22 H 1.09005 * 109.46608 * 178.60575 * 1 2 3 23 23 H 1.09002 * 109.47430 * 181.39412 * 3 2 1 24 24 H 1.09003 * 109.47458 * 301.40330 * 3 2 1 25 25 H 1.09001 * 109.46693 * 61.39629 * 3 2 1 26 26 H 1.08991 * 110.03117 * 359.97438 * 4 2 1 27 27 H 1.08992 * 110.03098 * 121.38233 * 4 2 1 28 28 H 1.08998 * 110.48999 * 264.92941 * 5 4 2 29 29 H 1.09002 * 110.48820 * 142.28871 * 5 4 2 30 30 H 0.96698 * 113.99679 * 60.00113 * 10 8 6 31 31 H 0.97000 * 119.99462 * 359.97438 * 14 13 11 32 32 H 1.09001 * 110.48516 * 336.99428 * 19 2 1 33 33 H 1.09000 * 110.48542 * 214.34664 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0538 1.4375 0.0000 4 6 2.0571 -0.7540 -1.2336 5 6 2.8874 -1.9409 -0.7030 6 6 2.3281 -2.1899 0.7197 7 1 1.4037 -2.7659 0.6791 8 6 3.3661 -2.8956 1.5946 9 1 4.3000 -2.3335 1.5754 10 8 2.8841 -2.9726 2.9376 11 6 3.6061 -4.2865 1.0665 12 1 3.0715 -4.6327 0.1944 13 6 4.5076 -5.1174 1.6974 14 7 5.1583 -4.6961 2.7597 15 14 4.8045 -6.8417 1.0432 16 1 3.8591 -7.7864 1.6906 17 1 4.5911 -6.8573 -0.4264 18 1 6.1993 -7.2524 1.3452 19 6 2.0585 -0.7550 1.2370 20 1 -0.3632 0.4919 0.9023 21 1 -0.3633 0.5354 -0.8771 22 1 -0.3633 -1.0274 -0.0250 23 1 3.1434 1.4273 -0.0250 24 1 1.6750 1.9623 -0.8771 25 1 1.7158 1.9473 0.9023 26 1 1.2229 -1.1202 -1.8319 27 1 2.6859 -0.0958 -1.8330 28 1 3.9440 -1.6769 -0.6568 29 1 2.7401 -2.8202 -1.3301 30 1 2.0541 -3.4601 3.0302 31 1 5.0044 -3.8005 3.0992 32 1 1.3062 -0.7689 2.0257 33 1 2.9812 -0.2996 1.5965 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535876551.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:07 Heat of formation + Delta-G solvation = -111.619174 kcal Electronic energy + Delta-G solvation = -13308.630524 eV Core-core repulsion = 11138.722296 eV Total energy + Delta-G solvation = -2169.908228 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.27398 -37.61102 -34.26441 -33.25820 -29.97704 -28.20071 -28.08536 -25.24749 -23.74983 -21.13715 -19.77017 -19.08658 -17.17542 -16.58840 -15.78174 -15.34285 -15.26504 -14.53290 -14.43438 -14.16100 -14.04187 -13.75788 -12.99178 -12.72277 -12.55199 -12.32055 -12.20064 -11.95963 -11.86039 -11.50515 -11.37546 -11.32530 -11.29093 -10.95173 -10.61879 -9.96535 -8.58575 -6.42340 1.51270 1.60026 1.77442 2.56290 3.17907 3.61829 3.75698 3.81857 4.08105 4.33784 4.48352 4.51861 4.55771 4.60318 4.78034 4.83172 4.90480 4.91072 5.03017 5.10972 5.13443 5.20595 5.21709 5.36915 5.41854 5.49191 5.59769 5.69333 5.94817 6.17936 6.59314 7.19165 7.53674 8.77984 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.056700 B = 0.009346 C = 0.008757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.707453 B = 2995.212830 C = 3196.691351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.071 4.071 3 C -0.134 4.134 4 C -0.108 4.108 5 C -0.104 4.104 6 C -0.100 4.100 7 H 0.060 0.940 8 C 0.217 3.783 9 H 0.011 0.989 10 O -0.595 6.595 11 C -0.646 4.646 12 H 0.050 0.950 13 C -0.023 4.023 14 N -0.926 5.926 15 Si 1.116 2.884 16 H -0.273 1.273 17 H -0.270 1.270 18 H -0.285 1.285 19 C -0.099 4.099 20 H 0.057 0.943 21 H 0.069 0.931 22 H 0.047 0.953 23 H 0.045 0.955 24 H 0.071 0.929 25 H 0.056 0.944 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.042 0.958 29 H 0.053 0.947 30 H 0.362 0.638 31 H 0.266 0.734 32 H 0.059 0.941 33 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.580 8.214 -7.495 14.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.071 4.071 3 C -0.191 4.191 4 C -0.145 4.145 5 C -0.141 4.141 6 C -0.119 4.119 7 H 0.079 0.921 8 C 0.160 3.840 9 H 0.029 0.971 10 O -0.401 6.401 11 C -0.684 4.684 12 H 0.068 0.932 13 C -0.224 4.224 14 N -0.562 5.562 15 Si 0.938 3.062 16 H -0.199 1.199 17 H -0.195 1.195 18 H -0.211 1.211 19 C -0.137 4.137 20 H 0.076 0.924 21 H 0.088 0.912 22 H 0.066 0.934 23 H 0.064 0.936 24 H 0.089 0.911 25 H 0.075 0.925 26 H 0.091 0.909 27 H 0.090 0.910 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.208 0.792 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -7.181 7.229 -7.134 12.439 hybrid contribution -0.952 0.943 -0.025 1.340 sum -8.133 8.172 -7.160 13.571 Atomic orbital electron populations 1.21852 0.93235 1.01523 1.02235 1.21223 0.96412 0.95503 0.94008 1.21873 1.00321 0.94623 1.02289 1.22288 0.99299 0.95986 0.96972 1.22120 0.98562 0.97996 0.95465 1.22521 0.97970 0.95637 0.95725 0.92106 1.19486 0.91222 0.93970 0.79327 0.97140 1.86405 1.43800 1.78081 1.31787 1.22856 1.28156 1.01342 1.16038 0.93180 1.27310 0.92422 1.08438 0.94272 1.70756 1.41766 1.20762 1.22945 0.82969 0.76694 0.70744 0.75814 1.19867 1.19512 1.21106 1.22400 0.99567 0.94491 0.97200 0.92414 0.91156 0.93395 0.93619 0.91052 0.92456 0.90874 0.90978 0.93917 0.92816 0.79189 0.92407 0.92251 0.93909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.01 8.14 71.98 0.59 -2.42 16 2 C -0.07 -1.95 0.94 -51.45 -0.05 -2.00 16 3 C -0.13 -3.12 8.15 71.98 0.59 -2.53 16 4 C -0.11 -3.05 6.11 31.32 0.19 -2.86 16 5 C -0.10 -3.87 5.80 31.67 0.18 -3.69 16 6 C -0.10 -4.10 2.57 -9.50 -0.02 -4.13 16 7 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 8 C 0.22 11.30 1.96 29.85 0.06 11.36 16 9 H 0.01 0.63 7.96 -2.38 -0.02 0.61 16 10 O -0.60 -31.18 11.71 -148.98 -1.74 -32.93 16 11 C -0.65 -36.49 8.34 25.60 0.21 -36.27 16 12 H 0.05 2.76 7.67 -2.91 -0.02 2.74 16 13 C -0.02 -1.36 5.40 84.65 0.46 -0.90 16 14 N -0.93 -58.69 13.53 21.45 0.29 -58.40 16 15 Si 1.12 50.82 29.90 68.60 2.05 52.87 16 16 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 17 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 18 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 19 C -0.10 -3.48 5.06 31.67 0.16 -3.32 16 20 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 21 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 22 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 23 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 24 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.07 1.85 7.67 -2.39 -0.02 1.84 16 27 H 0.07 1.83 7.67 -2.39 -0.02 1.81 16 28 H 0.04 1.72 8.01 -2.39 -0.02 1.70 16 29 H 0.05 2.05 8.11 -2.39 -0.02 2.03 16 30 H 0.36 16.91 9.04 -74.06 -0.67 16.24 16 31 H 0.27 17.43 6.47 -92.71 -0.60 16.83 16 32 H 0.06 2.03 7.84 -2.39 -0.02 2.02 16 33 H 0.04 1.64 7.76 -2.39 -0.02 1.62 16 Total: -1.00 -65.38 264.14 3.52 -61.86 By element: Atomic # 1 Polarization: 22.81 SS G_CDS: 0.56 Total: 23.37 kcal Atomic # 6 Polarization: -49.13 SS G_CDS: 2.36 Total: -46.77 kcal Atomic # 7 Polarization: -58.69 SS G_CDS: 0.29 Total: -58.40 kcal Atomic # 8 Polarization: -31.18 SS G_CDS: -1.74 Total: -32.93 kcal Atomic # 14 Polarization: 50.82 SS G_CDS: 2.05 Total: 52.87 kcal Total: -65.38 3.52 -61.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535876551.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.763 kcal (2) G-P(sol) polarization free energy of solvation -65.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds