Wall clock time and date at job start Mon Mar 30 2020 01:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 110.05496 * 2 1 4 4 C 1.54262 * 110.02815 * 238.58308 * 2 1 3 5 5 C 1.54892 * 104.19906 * 264.32456 * 4 2 1 6 6 C 1.54888 * 102.74561 * 322.06202 * 5 4 2 7 7 H 1.09002 * 110.59893 * 279.20194 * 6 5 4 8 8 C 1.53003 * 110.48680 * 156.62221 * 6 5 4 9 9 H 1.08999 * 109.47269 * 190.22321 * 8 6 5 10 10 O 1.42903 * 109.46459 * 310.22214 * 8 6 5 11 11 C 1.50696 * 109.47222 * 70.21880 * 8 6 5 12 12 H 1.07991 * 120.00427 * 0.02562 * 11 8 6 13 13 C 1.37879 * 119.99614 * 180.02562 * 11 8 6 14 14 N 1.31510 * 120.00261 * 0.02562 * 13 11 8 15 15 Si 1.86799 * 119.99746 * 180.02562 * 13 11 8 16 16 H 1.48499 * 109.47404 * 90.00100 * 15 13 11 17 17 H 1.48506 * 109.47412 * 210.00385 * 15 13 11 18 18 H 1.48504 * 109.47304 * 330.00008 * 15 13 11 19 19 C 1.53874 * 110.03178 * 121.42153 * 2 1 3 20 20 H 1.09000 * 109.47036 * 298.58465 * 1 2 3 21 21 H 1.08996 * 109.47576 * 58.58258 * 1 2 3 22 22 H 1.09002 * 109.47463 * 178.58566 * 1 2 3 23 23 H 1.08998 * 109.46423 * 181.41680 * 3 2 1 24 24 H 1.09002 * 109.46881 * 301.41685 * 3 2 1 25 25 H 1.09000 * 109.46927 * 61.42196 * 3 2 1 26 26 H 1.09001 * 110.49115 * 23.00746 * 4 2 1 27 27 H 1.08999 * 110.48490 * 145.51151 * 4 2 1 28 28 H 1.08997 * 110.75510 * 203.74267 * 5 4 2 29 29 H 1.09000 * 110.75478 * 80.37507 * 5 4 2 30 30 H 0.96700 * 114.00311 * 60.00313 * 10 8 6 31 31 H 0.97001 * 120.00070 * 180.02562 * 14 13 11 32 32 H 1.09001 * 110.03188 * 359.97438 * 19 2 1 33 33 H 1.09000 * 110.06660 * 238.59202 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0547 1.4372 0.0000 4 6 2.0583 -0.7555 -1.2369 5 6 2.3280 -2.1902 -0.7192 6 6 2.8874 -1.9407 0.7034 7 1 3.9442 -1.6776 0.6592 8 6 2.6807 -3.1746 1.5841 9 1 2.9103 -2.9244 2.6199 10 8 1.3216 -3.6058 1.4883 11 6 3.5926 -4.2811 1.1206 12 1 4.2539 -4.1204 0.2821 13 6 3.5828 -5.4989 1.7672 14 7 2.7772 -5.6949 2.7880 15 14 4.7138 -6.8703 1.1931 16 1 6.0088 -6.7783 1.9139 17 1 4.0820 -8.1841 1.4761 18 1 4.9496 -6.7388 -0.2672 19 6 2.0571 -0.7537 1.2337 20 1 -0.3633 0.4917 0.9024 21 1 -0.3634 0.5357 -0.8769 22 1 -0.3634 -1.0273 -0.0254 23 1 3.1443 1.4261 -0.0254 24 1 1.6761 1.9622 -0.8770 25 1 1.7175 1.9471 0.9025 26 1 1.3060 -0.7696 -2.0255 27 1 2.9797 -0.2986 -1.5981 28 1 3.0674 -2.6931 -1.3424 29 1 1.4030 -2.7652 -0.6752 30 1 1.0472 -3.8454 0.5925 31 1 2.7706 -6.5515 3.2431 32 1 1.2229 -1.1190 1.8326 33 1 2.6865 -0.0959 1.8331 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535876553.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:10 Heat of formation + Delta-G solvation = -82.691737 kcal Electronic energy + Delta-G solvation = -13375.400426 eV Core-core repulsion = 11206.746585 eV Total energy + Delta-G solvation = -2168.653841 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.81138 -35.35550 -32.05810 -31.33214 -28.64962 -27.02598 -26.51330 -23.71413 -22.09413 -18.82962 -18.31155 -16.72208 -15.29834 -14.62781 -14.52609 -13.78487 -13.40019 -13.32161 -12.72471 -12.65214 -12.42865 -11.66035 -11.45719 -11.14692 -10.91733 -10.87437 -10.56808 -10.27737 -10.21934 -10.09078 -9.94716 -9.79934 -9.63338 -8.81481 -8.47371 -7.98350 -5.93602 -4.10383 3.30710 3.37813 3.40340 4.43998 5.03419 5.15197 5.17706 5.33285 5.71217 5.81475 5.86916 5.88963 5.91802 6.05392 6.11546 6.22531 6.25147 6.38098 6.44407 6.51407 6.55694 6.65545 6.72733 6.88670 6.95378 7.07343 7.30125 7.82637 7.93678 8.29541 8.92914 9.47142 9.66772 11.10590 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.062676 B = 0.009330 C = 0.008899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.638102 B = 3000.389822 C = 3145.489530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.071 4.071 3 C -0.136 4.136 4 C -0.115 4.115 5 C -0.109 4.109 6 C -0.113 4.113 7 H 0.062 0.938 8 C 0.235 3.765 9 H 0.053 0.947 10 O -0.564 6.564 11 C -0.565 4.565 12 H 0.055 0.945 13 C 0.076 3.924 14 N -0.862 5.862 15 Si 0.886 3.114 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.274 1.274 19 C -0.111 4.111 20 H 0.049 0.951 21 H 0.044 0.956 22 H 0.059 0.941 23 H 0.052 0.948 24 H 0.046 0.954 25 H 0.049 0.951 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.342 0.658 31 H 0.259 0.741 32 H 0.070 0.930 33 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.094 9.553 -6.055 11.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.071 4.071 3 C -0.193 4.193 4 C -0.153 4.153 5 C -0.146 4.146 6 C -0.132 4.132 7 H 0.081 0.919 8 C 0.177 3.823 9 H 0.070 0.930 10 O -0.369 6.369 11 C -0.603 4.603 12 H 0.073 0.927 13 C -0.129 4.129 14 N -0.498 5.498 15 Si 0.713 3.287 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.148 4.148 20 H 0.068 0.932 21 H 0.063 0.937 22 H 0.078 0.922 23 H 0.071 0.929 24 H 0.065 0.935 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.187 0.813 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.146 9.557 -5.256 11.116 hybrid contribution 0.773 -0.908 -0.849 1.464 sum -1.373 8.648 -6.106 10.675 Atomic orbital electron populations 1.21866 0.94930 1.01844 1.00477 1.21183 0.95130 0.94589 0.96224 1.21905 1.00625 0.96037 1.00753 1.22494 0.99697 0.96758 0.96330 1.22357 1.00685 0.94847 0.96703 1.22698 0.98032 0.96834 0.95652 0.91934 1.19301 0.80243 0.88297 0.94444 0.92951 1.86553 1.30561 1.88063 1.31679 1.21709 1.23582 0.98298 1.16699 0.92707 1.25064 0.94779 0.98553 0.94491 1.70078 1.35943 1.23703 1.20124 0.86731 0.81018 0.81778 0.79166 1.20660 1.21222 1.19898 1.22336 0.99907 0.96487 0.96117 0.93210 0.93671 0.92200 0.92901 0.93453 0.93172 0.92685 0.92425 0.92177 0.91649 0.81275 0.93149 0.91119 0.93190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.87 8.14 37.16 0.30 -1.56 16 2 C -0.07 -1.07 0.94 -153.39 -0.14 -1.21 16 3 C -0.14 -1.76 8.16 37.16 0.30 -1.46 16 4 C -0.12 -1.75 5.90 -25.07 -0.15 -1.90 16 5 C -0.11 -1.98 5.86 -24.74 -0.15 -2.12 16 6 C -0.11 -2.32 2.66 -88.96 -0.24 -2.56 16 7 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 8 C 0.23 5.97 2.56 -27.88 -0.07 5.90 16 9 H 0.05 1.49 8.14 -51.93 -0.42 1.06 16 10 O -0.56 -14.59 12.04 -35.23 -0.42 -15.01 16 11 C -0.56 -15.59 8.42 -34.44 -0.29 -15.88 16 12 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 13 C 0.08 2.17 5.40 -17.82 -0.10 2.07 16 14 N -0.86 -25.86 12.84 55.43 0.71 -25.15 16 15 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 18 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 19 C -0.11 -2.00 5.61 -25.62 -0.14 -2.14 16 20 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 21 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 22 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 23 H 0.05 0.68 8.12 -51.93 -0.42 0.26 16 24 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.76 7.84 -51.93 -0.41 0.36 16 27 H 0.06 0.84 7.83 -51.93 -0.41 0.43 16 28 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.07 1.21 5.89 -51.93 -0.31 0.90 16 30 H 0.34 7.99 6.77 45.56 0.31 8.30 16 31 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 32 H 0.07 1.39 6.96 -51.93 -0.36 1.03 16 33 H 0.05 0.86 7.67 -51.93 -0.40 0.46 16 LS Contribution 261.67 15.07 3.94 3.94 Total: -1.00 -29.60 261.67 -6.37 -35.97 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -4.92 Total: 4.68 kcal Atomic # 6 Polarization: -20.19 SS G_CDS: -0.67 Total: -20.86 kcal Atomic # 7 Polarization: -25.86 SS G_CDS: 0.71 Total: -25.15 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: -0.42 Total: -15.01 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -29.60 -6.37 -35.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535876553.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.720 kcal (2) G-P(sol) polarization free energy of solvation -29.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds