Wall clock time and date at job start Mon Mar 30 2020 01:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 110.05496 * 2 1 4 4 C 1.54262 * 110.02815 * 238.58308 * 2 1 3 5 5 C 1.54892 * 104.19906 * 264.32456 * 4 2 1 6 6 C 1.54888 * 102.74561 * 322.06202 * 5 4 2 7 7 H 1.09002 * 110.59893 * 279.20194 * 6 5 4 8 8 C 1.53003 * 110.48680 * 156.62221 * 6 5 4 9 9 H 1.08999 * 109.47269 * 190.22321 * 8 6 5 10 10 O 1.42903 * 109.46459 * 310.22214 * 8 6 5 11 11 C 1.50696 * 109.47222 * 70.21880 * 8 6 5 12 12 H 1.07991 * 120.00427 * 0.02562 * 11 8 6 13 13 C 1.37879 * 119.99614 * 180.02562 * 11 8 6 14 14 N 1.31510 * 120.00261 * 0.02562 * 13 11 8 15 15 Si 1.86799 * 119.99746 * 180.02562 * 13 11 8 16 16 H 1.48499 * 109.47404 * 90.00100 * 15 13 11 17 17 H 1.48506 * 109.47412 * 210.00385 * 15 13 11 18 18 H 1.48504 * 109.47304 * 330.00008 * 15 13 11 19 19 C 1.53874 * 110.03178 * 121.42153 * 2 1 3 20 20 H 1.09000 * 109.47036 * 298.58465 * 1 2 3 21 21 H 1.08996 * 109.47576 * 58.58258 * 1 2 3 22 22 H 1.09002 * 109.47463 * 178.58566 * 1 2 3 23 23 H 1.08998 * 109.46423 * 181.41680 * 3 2 1 24 24 H 1.09002 * 109.46881 * 301.41685 * 3 2 1 25 25 H 1.09000 * 109.46927 * 61.42196 * 3 2 1 26 26 H 1.09001 * 110.49115 * 23.00746 * 4 2 1 27 27 H 1.08999 * 110.48490 * 145.51151 * 4 2 1 28 28 H 1.08997 * 110.75510 * 203.74267 * 5 4 2 29 29 H 1.09000 * 110.75478 * 80.37507 * 5 4 2 30 30 H 0.96700 * 114.00311 * 60.00313 * 10 8 6 31 31 H 0.97001 * 120.00070 * 180.02562 * 14 13 11 32 32 H 1.09001 * 110.03188 * 359.97438 * 19 2 1 33 33 H 1.09000 * 110.06660 * 238.59202 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0547 1.4372 0.0000 4 6 2.0583 -0.7555 -1.2369 5 6 2.3280 -2.1902 -0.7192 6 6 2.8874 -1.9407 0.7034 7 1 3.9442 -1.6776 0.6592 8 6 2.6807 -3.1746 1.5841 9 1 2.9103 -2.9244 2.6199 10 8 1.3216 -3.6058 1.4883 11 6 3.5926 -4.2811 1.1206 12 1 4.2539 -4.1204 0.2821 13 6 3.5828 -5.4989 1.7672 14 7 2.7772 -5.6949 2.7880 15 14 4.7138 -6.8703 1.1931 16 1 6.0088 -6.7783 1.9139 17 1 4.0820 -8.1841 1.4761 18 1 4.9496 -6.7388 -0.2672 19 6 2.0571 -0.7537 1.2337 20 1 -0.3633 0.4917 0.9024 21 1 -0.3634 0.5357 -0.8769 22 1 -0.3634 -1.0273 -0.0254 23 1 3.1443 1.4261 -0.0254 24 1 1.6761 1.9622 -0.8770 25 1 1.7175 1.9471 0.9025 26 1 1.3060 -0.7696 -2.0255 27 1 2.9797 -0.2986 -1.5981 28 1 3.0674 -2.6931 -1.3424 29 1 1.4030 -2.7652 -0.6752 30 1 1.0472 -3.8454 0.5925 31 1 2.7706 -6.5515 3.2431 32 1 1.2229 -1.1190 1.8326 33 1 2.6865 -0.0959 1.8331 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535876553.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:10 Heat of formation + Delta-G solvation = -101.475096 kcal Electronic energy + Delta-G solvation = -13376.214933 eV Core-core repulsion = 11206.746585 eV Total energy + Delta-G solvation = -2169.468348 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.27481 -37.19714 -34.23194 -32.85805 -30.18395 -28.41943 -28.07214 -25.30596 -23.83797 -20.51015 -19.65330 -18.76252 -16.95848 -16.66665 -16.15395 -15.32561 -15.07662 -14.59067 -14.39886 -13.99454 -13.84439 -13.27772 -12.91334 -12.83306 -12.74582 -12.37581 -12.23334 -11.99597 -11.76526 -11.41579 -11.28684 -11.21309 -11.14986 -10.85350 -10.61383 -9.99094 -8.10614 -6.35162 1.39458 1.39723 1.50681 2.39850 3.14586 3.74761 3.86797 3.94165 4.28693 4.47249 4.55698 4.57813 4.64487 4.73960 4.88502 4.90959 5.00353 5.04647 5.14482 5.18602 5.21188 5.29544 5.33941 5.48579 5.55482 5.60227 5.69270 5.73458 5.86913 6.16116 6.77090 7.36120 7.58325 8.93725 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.062676 B = 0.009330 C = 0.008899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.638102 B = 3000.389822 C = 3145.489530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.068 4.068 3 C -0.132 4.132 4 C -0.106 4.106 5 C -0.107 4.107 6 C -0.110 4.110 7 H 0.057 0.943 8 C 0.234 3.766 9 H 0.011 0.989 10 O -0.578 6.578 11 C -0.575 4.575 12 H 0.058 0.942 13 C 0.021 3.979 14 N -0.904 5.904 15 Si 0.957 3.043 16 H -0.275 1.275 17 H -0.284 1.284 18 H -0.263 1.263 19 C -0.107 4.107 20 H 0.051 0.949 21 H 0.069 0.931 22 H 0.043 0.957 23 H 0.052 0.948 24 H 0.068 0.932 25 H 0.054 0.946 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.352 0.648 31 H 0.259 0.741 32 H 0.047 0.953 33 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.830 10.511 -7.862 13.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.068 4.068 3 C -0.190 4.190 4 C -0.143 4.143 5 C -0.144 4.144 6 C -0.128 4.128 7 H 0.075 0.925 8 C 0.176 3.824 9 H 0.029 0.971 10 O -0.383 6.383 11 C -0.613 4.613 12 H 0.076 0.924 13 C -0.181 4.181 14 N -0.541 5.541 15 Si 0.782 3.218 16 H -0.200 1.200 17 H -0.210 1.210 18 H -0.188 1.188 19 C -0.145 4.145 20 H 0.070 0.930 21 H 0.088 0.912 22 H 0.062 0.938 23 H 0.071 0.929 24 H 0.087 0.913 25 H 0.073 0.927 26 H 0.094 0.906 27 H 0.088 0.912 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.198 0.802 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.876 10.527 -7.079 12.824 hybrid contribution 0.674 -1.201 -0.242 1.398 sum -1.202 9.326 -7.321 11.917 Atomic orbital electron populations 1.21848 0.94024 1.01275 1.01802 1.21167 0.95878 0.95581 0.94216 1.21865 1.00614 0.94407 1.02067 1.22457 1.00954 0.94166 0.96764 1.22313 0.99935 0.97150 0.95006 1.22514 0.98358 0.95532 0.96442 0.92489 1.19158 0.79794 0.90181 0.93234 0.97127 1.86494 1.30699 1.88427 1.32704 1.22073 1.23702 0.99039 1.16524 0.92370 1.25941 0.96324 1.01316 0.94523 1.70223 1.37936 1.24409 1.21577 0.85601 0.78827 0.78304 0.79095 1.20040 1.20983 1.18768 1.22283 0.98791 0.95902 0.97531 0.92965 0.91244 0.93804 0.92938 0.91341 0.92677 0.90600 0.91245 0.92741 0.92290 0.80164 0.93162 0.93383 0.92724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.37 8.14 71.98 0.59 -2.78 16 2 C -0.07 -1.89 0.94 -51.46 -0.05 -1.94 16 3 C -0.13 -2.98 8.16 71.98 0.59 -2.39 16 4 C -0.11 -2.91 5.90 31.67 0.19 -2.73 16 5 C -0.11 -3.77 5.86 31.89 0.19 -3.59 16 6 C -0.11 -4.51 2.66 -9.72 -0.03 -4.54 16 7 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 8 C 0.23 12.28 2.56 29.85 0.08 12.35 16 9 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 10 O -0.58 -30.75 12.04 -148.98 -1.79 -32.54 16 11 C -0.58 -32.19 8.42 25.60 0.22 -31.98 16 12 H 0.06 3.14 7.74 -2.92 -0.02 3.12 16 13 C 0.02 1.17 5.40 84.66 0.46 1.63 16 14 N -0.90 -55.41 12.84 21.45 0.28 -55.13 16 15 Si 0.96 44.21 29.54 68.60 2.03 46.24 16 16 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 17 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 18 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 19 C -0.11 -3.83 5.61 31.32 0.18 -3.66 16 20 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 21 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 22 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 23 H 0.05 1.19 8.12 -2.39 -0.02 1.17 16 24 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.08 1.81 7.84 -2.39 -0.02 1.79 16 27 H 0.07 1.77 7.83 -2.39 -0.02 1.75 16 28 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.06 2.15 5.89 -2.39 -0.01 2.13 16 30 H 0.35 16.81 6.77 -74.06 -0.50 16.30 16 31 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 32 H 0.05 1.92 6.96 -2.39 -0.02 1.90 16 33 H 0.05 1.85 7.67 -2.39 -0.02 1.84 16 Total: -1.00 -63.77 261.67 3.47 -60.30 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: 0.56 Total: 20.76 kcal Atomic # 6 Polarization: -42.02 SS G_CDS: 2.40 Total: -39.62 kcal Atomic # 7 Polarization: -55.41 SS G_CDS: 0.28 Total: -55.13 kcal Atomic # 8 Polarization: -30.75 SS G_CDS: -1.79 Total: -32.54 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -63.77 3.47 -60.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535876553.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.175 kcal (2) G-P(sol) polarization free energy of solvation -63.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds