Wall clock time and date at job start Mon Mar 30 2020 01:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 110.02181 * 2 1 4 4 C 1.54269 * 110.03176 * 121.39471 * 2 1 3 5 5 C 1.54886 * 104.19817 * 95.67070 * 4 2 1 6 6 C 1.54891 * 102.75023 * 37.94355 * 5 4 2 7 7 H 1.09004 * 110.48866 * 80.86491 * 6 5 4 8 8 C 1.52999 * 110.49098 * 203.38193 * 6 5 4 9 9 H 1.09000 * 109.47486 * 176.75687 * 8 6 5 10 10 O 1.42895 * 109.47162 * 56.75085 * 8 6 5 11 11 C 1.50706 * 109.46573 * 296.75621 * 8 6 5 12 12 H 1.07995 * 120.00167 * 359.72054 * 11 8 6 13 13 C 1.37879 * 119.99394 * 179.97438 * 11 8 6 14 14 N 1.31514 * 120.00338 * 0.02562 * 13 11 8 15 15 Si 1.86800 * 119.99424 * 180.02562 * 13 11 8 16 16 H 1.48501 * 109.47474 * 90.00322 * 15 13 11 17 17 H 1.48507 * 109.46754 * 210.00056 * 15 13 11 18 18 H 1.48498 * 109.47278 * 329.99887 * 15 13 11 19 19 C 1.54091 * 110.11083 * 238.63184 * 2 1 3 20 20 H 1.09000 * 109.47119 * 300.06526 * 1 2 3 21 21 H 1.09007 * 109.46834 * 60.05955 * 1 2 3 22 22 H 1.09000 * 109.47365 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47338 * 179.97438 * 3 2 1 24 24 H 1.09005 * 109.46976 * 299.93778 * 3 2 1 25 25 H 1.09000 * 109.47304 * 59.93549 * 3 2 1 26 26 H 1.08993 * 110.48412 * 336.99270 * 4 2 1 27 27 H 1.09004 * 110.48564 * 214.35219 * 4 2 1 28 28 H 1.09000 * 110.75862 * 279.62655 * 5 4 2 29 29 H 1.09000 * 110.75912 * 156.25477 * 5 4 2 30 30 H 0.96698 * 114.00355 * 300.00783 * 10 8 6 31 31 H 0.96996 * 119.99730 * 179.97438 * 14 13 11 32 32 H 1.09003 * 110.15638 * 121.53824 * 19 2 1 33 33 H 1.08993 * 110.00532 * 0.04312 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0538 1.4375 0.0000 4 6 2.0584 -0.7550 1.2372 5 6 2.3279 -2.1899 0.7201 6 6 2.8874 -1.9411 -0.7027 7 1 3.9445 -1.6794 -0.6566 8 6 2.6805 -3.1753 -1.5829 9 1 3.0271 -2.9626 -2.5942 10 8 1.2916 -3.5095 -1.6158 11 6 3.4624 -4.3327 -1.0169 12 1 4.0518 -4.1998 -0.1218 13 6 3.4294 -5.5597 -1.6449 14 7 2.7160 -5.7199 -2.7381 15 14 4.3980 -6.9944 -0.9430 16 1 3.5485 -7.7419 0.0187 17 1 4.8113 -7.8993 -2.0456 18 1 5.6042 -6.4827 -0.2442 19 6 2.0598 -0.7532 -1.2355 20 1 -0.3633 0.5148 0.8894 21 1 -0.3633 0.5129 -0.8906 22 1 -0.3634 -1.0276 0.0005 23 1 3.1438 1.4271 0.0005 24 1 1.6963 1.9545 -0.8906 25 1 1.6945 1.9552 0.8894 26 1 1.3061 -0.7687 2.0257 27 1 2.9811 -0.2995 1.5968 28 1 1.4030 -2.7649 0.6764 29 1 3.0674 -2.6926 1.3434 30 1 0.9149 -3.7113 -0.7483 31 1 2.6931 -6.5831 -3.1800 32 1 2.6916 -0.0963 -1.8335 33 1 1.2263 -1.1181 -1.8355 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535876554.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:12 Heat of formation + Delta-G solvation = -83.433625 kcal Electronic energy + Delta-G solvation = -13389.740563 eV Core-core repulsion = 11221.054551 eV Total energy + Delta-G solvation = -2168.686011 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.79572 -35.33774 -32.04902 -31.36340 -28.58818 -27.01868 -26.54543 -23.68202 -22.09529 -18.83164 -18.30041 -16.69036 -15.27901 -14.63852 -14.50457 -13.79393 -13.40382 -13.33634 -12.74142 -12.63683 -12.37318 -11.66589 -11.47074 -11.12723 -10.94676 -10.84668 -10.56652 -10.28626 -10.24583 -10.10237 -9.93000 -9.74651 -9.63758 -8.78838 -8.48116 -7.98658 -5.93511 -4.10151 3.30667 3.37772 3.40530 4.44049 5.04087 5.15989 5.18407 5.33426 5.71955 5.82071 5.87404 5.89410 5.92315 6.06460 6.11883 6.23551 6.25347 6.38741 6.45013 6.52388 6.56621 6.66503 6.73760 6.89381 6.97500 7.07319 7.29829 7.83499 7.93644 8.29623 8.93004 9.47256 9.66897 11.10742 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.062048 B = 0.009439 C = 0.008969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.152174 B = 2965.595325 C = 3121.091231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.071 4.071 3 C -0.136 4.136 4 C -0.116 4.116 5 C -0.105 4.105 6 C -0.114 4.114 7 H 0.061 0.939 8 C 0.234 3.766 9 H 0.052 0.948 10 O -0.564 6.564 11 C -0.564 4.564 12 H 0.055 0.945 13 C 0.076 3.924 14 N -0.862 5.862 15 Si 0.885 3.115 16 H -0.280 1.280 17 H -0.287 1.287 18 H -0.274 1.274 19 C -0.112 4.112 20 H 0.044 0.956 21 H 0.049 0.951 22 H 0.059 0.941 23 H 0.052 0.948 24 H 0.049 0.951 25 H 0.046 0.954 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.342 0.658 31 H 0.259 0.741 32 H 0.049 0.951 33 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.072 9.593 5.965 11.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.071 4.071 3 C -0.193 4.193 4 C -0.154 4.154 5 C -0.143 4.143 6 C -0.133 4.133 7 H 0.079 0.921 8 C 0.177 3.823 9 H 0.070 0.930 10 O -0.367 6.367 11 C -0.602 4.602 12 H 0.073 0.927 13 C -0.129 4.129 14 N -0.499 5.499 15 Si 0.713 3.287 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.149 4.149 20 H 0.063 0.937 21 H 0.068 0.932 22 H 0.078 0.922 23 H 0.071 0.929 24 H 0.068 0.932 25 H 0.065 0.935 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.186 0.814 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.037 9.587 5.158 11.075 hybrid contribution 0.608 -0.947 0.945 1.469 sum -1.429 8.639 6.103 10.674 Atomic orbital electron populations 1.21863 0.94938 1.01848 1.00452 1.21224 0.95111 0.94575 0.96223 1.21904 1.00622 0.96069 1.00727 1.22509 0.99675 0.96869 0.96336 1.22328 1.00643 0.94632 0.96660 1.22693 0.98020 0.96819 0.95737 0.92066 1.19301 0.79741 0.88748 0.94520 0.92996 1.86547 1.26360 1.91195 1.32626 1.21707 1.30647 0.95910 1.11938 0.92652 1.25065 0.94595 0.98759 0.94472 1.70079 1.38506 1.23678 1.17609 0.86733 0.80504 0.82701 0.78774 1.20647 1.21233 1.19920 1.22368 1.00033 0.96395 0.96114 0.93666 0.93221 0.92213 0.92919 0.93193 0.93464 0.92682 0.92445 0.91798 0.92176 0.81360 0.93159 0.93236 0.90851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.86 8.15 37.16 0.30 -1.56 16 2 C -0.07 -1.07 0.94 -153.28 -0.14 -1.21 16 3 C -0.14 -1.76 8.15 37.16 0.30 -1.46 16 4 C -0.12 -1.77 5.90 -25.07 -0.15 -1.92 16 5 C -0.11 -1.92 5.64 -24.74 -0.14 -2.06 16 6 C -0.11 -2.33 2.73 -88.96 -0.24 -2.57 16 7 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 8 C 0.23 5.95 2.66 -27.88 -0.07 5.88 16 9 H 0.05 1.47 8.14 -51.93 -0.42 1.05 16 10 O -0.56 -14.52 11.78 -35.23 -0.42 -14.93 16 11 C -0.56 -15.51 8.26 -34.44 -0.28 -15.79 16 12 H 0.06 1.49 7.39 -52.49 -0.39 1.10 16 13 C 0.08 2.16 5.40 -17.82 -0.10 2.07 16 14 N -0.86 -25.84 12.84 55.43 0.71 -25.13 16 15 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 17 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 18 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 19 C -0.11 -2.00 5.60 -25.50 -0.14 -2.15 16 20 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 21 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 22 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 23 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.77 7.84 -51.93 -0.41 0.36 16 27 H 0.06 0.84 7.85 -51.93 -0.41 0.43 16 28 H 0.06 1.19 6.10 -51.93 -0.32 0.87 16 29 H 0.06 1.13 7.90 -51.93 -0.41 0.72 16 30 H 0.34 7.97 6.98 45.56 0.32 8.29 16 31 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 32 H 0.05 0.85 7.68 -51.93 -0.40 0.45 16 33 H 0.07 1.44 6.70 -51.93 -0.35 1.09 16 LS Contribution 260.81 15.07 3.93 3.93 Total: -1.00 -29.49 260.81 -6.34 -35.83 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -4.88 Total: 4.68 kcal Atomic # 6 Polarization: -20.11 SS G_CDS: -0.67 Total: -20.78 kcal Atomic # 7 Polarization: -25.84 SS G_CDS: 0.71 Total: -25.13 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: -0.42 Total: -14.93 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -29.49 -6.34 -35.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535876554.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.608 kcal (2) G-P(sol) polarization free energy of solvation -29.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds