Wall clock time and date at job start Mon Mar 30 2020 01:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 110.02181 * 2 1 4 4 C 1.54269 * 110.03176 * 121.39471 * 2 1 3 5 5 C 1.54886 * 104.19817 * 95.67070 * 4 2 1 6 6 C 1.54891 * 102.75023 * 37.94355 * 5 4 2 7 7 H 1.09004 * 110.48866 * 80.86491 * 6 5 4 8 8 C 1.52999 * 110.49098 * 203.38193 * 6 5 4 9 9 H 1.09000 * 109.47486 * 176.75687 * 8 6 5 10 10 O 1.42895 * 109.47162 * 56.75085 * 8 6 5 11 11 C 1.50706 * 109.46573 * 296.75621 * 8 6 5 12 12 H 1.07995 * 120.00167 * 359.72054 * 11 8 6 13 13 C 1.37879 * 119.99394 * 179.97438 * 11 8 6 14 14 N 1.31514 * 120.00338 * 0.02562 * 13 11 8 15 15 Si 1.86800 * 119.99424 * 180.02562 * 13 11 8 16 16 H 1.48501 * 109.47474 * 90.00322 * 15 13 11 17 17 H 1.48507 * 109.46754 * 210.00056 * 15 13 11 18 18 H 1.48498 * 109.47278 * 329.99887 * 15 13 11 19 19 C 1.54091 * 110.11083 * 238.63184 * 2 1 3 20 20 H 1.09000 * 109.47119 * 300.06526 * 1 2 3 21 21 H 1.09007 * 109.46834 * 60.05955 * 1 2 3 22 22 H 1.09000 * 109.47365 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47338 * 179.97438 * 3 2 1 24 24 H 1.09005 * 109.46976 * 299.93778 * 3 2 1 25 25 H 1.09000 * 109.47304 * 59.93549 * 3 2 1 26 26 H 1.08993 * 110.48412 * 336.99270 * 4 2 1 27 27 H 1.09004 * 110.48564 * 214.35219 * 4 2 1 28 28 H 1.09000 * 110.75862 * 279.62655 * 5 4 2 29 29 H 1.09000 * 110.75912 * 156.25477 * 5 4 2 30 30 H 0.96698 * 114.00355 * 300.00783 * 10 8 6 31 31 H 0.96996 * 119.99730 * 179.97438 * 14 13 11 32 32 H 1.09003 * 110.15638 * 121.53824 * 19 2 1 33 33 H 1.08993 * 110.00532 * 0.04312 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0538 1.4375 0.0000 4 6 2.0584 -0.7550 1.2372 5 6 2.3279 -2.1899 0.7201 6 6 2.8874 -1.9411 -0.7027 7 1 3.9445 -1.6794 -0.6566 8 6 2.6805 -3.1753 -1.5829 9 1 3.0271 -2.9626 -2.5942 10 8 1.2916 -3.5095 -1.6158 11 6 3.4624 -4.3327 -1.0169 12 1 4.0518 -4.1998 -0.1218 13 6 3.4294 -5.5597 -1.6449 14 7 2.7160 -5.7199 -2.7381 15 14 4.3980 -6.9944 -0.9430 16 1 3.5485 -7.7419 0.0187 17 1 4.8113 -7.8993 -2.0456 18 1 5.6042 -6.4827 -0.2442 19 6 2.0598 -0.7532 -1.2355 20 1 -0.3633 0.5148 0.8894 21 1 -0.3633 0.5129 -0.8906 22 1 -0.3634 -1.0276 0.0005 23 1 3.1438 1.4271 0.0005 24 1 1.6963 1.9545 -0.8906 25 1 1.6945 1.9552 0.8894 26 1 1.3061 -0.7687 2.0257 27 1 2.9811 -0.2995 1.5968 28 1 1.4030 -2.7649 0.6764 29 1 3.0674 -2.6926 1.3434 30 1 0.9149 -3.7113 -0.7483 31 1 2.6931 -6.5831 -3.1800 32 1 2.6916 -0.0963 -1.8335 33 1 1.2263 -1.1181 -1.8355 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535876554.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:11 Heat of formation + Delta-G solvation = -102.127734 kcal Electronic energy + Delta-G solvation = -13390.551200 eV Core-core repulsion = 11221.054551 eV Total energy + Delta-G solvation = -2169.496649 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.26064 -37.17523 -34.22111 -32.88670 -30.11653 -28.44722 -28.06358 -25.29067 -23.82659 -20.50943 -19.64997 -18.72361 -16.92980 -16.66041 -16.16466 -15.34409 -15.06736 -14.59895 -14.37568 -13.98780 -13.82298 -13.27151 -12.93766 -12.79156 -12.75717 -12.36111 -12.22643 -12.04860 -11.77666 -11.39840 -11.26240 -11.19333 -11.14761 -10.81933 -10.61478 -9.99291 -8.10184 -6.34390 1.39521 1.39944 1.50783 2.40122 3.15170 3.75398 3.87431 3.94972 4.29675 4.47417 4.56363 4.59127 4.65386 4.74740 4.88735 4.91438 5.00279 5.05495 5.14866 5.19674 5.21465 5.30315 5.35047 5.48999 5.56288 5.60421 5.69826 5.74154 5.88340 6.16633 6.77650 7.36736 7.58688 8.94248 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.062048 B = 0.009439 C = 0.008969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.152174 B = 2965.595325 C = 3121.091231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.068 4.068 3 C -0.132 4.132 4 C -0.107 4.107 5 C -0.103 4.103 6 C -0.110 4.110 7 H 0.056 0.944 8 C 0.233 3.767 9 H 0.010 0.990 10 O -0.576 6.576 11 C -0.573 4.573 12 H 0.059 0.941 13 C 0.020 3.980 14 N -0.904 5.904 15 Si 0.956 3.044 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.265 1.265 19 C -0.108 4.108 20 H 0.068 0.932 21 H 0.052 0.948 22 H 0.043 0.957 23 H 0.051 0.949 24 H 0.054 0.946 25 H 0.067 0.933 26 H 0.075 0.925 27 H 0.068 0.932 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.351 0.649 31 H 0.259 0.741 32 H 0.053 0.947 33 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.940 10.532 7.824 13.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.068 4.068 3 C -0.190 4.190 4 C -0.144 4.144 5 C -0.141 4.141 6 C -0.129 4.129 7 H 0.074 0.926 8 C 0.176 3.824 9 H 0.028 0.972 10 O -0.381 6.381 11 C -0.611 4.611 12 H 0.077 0.923 13 C -0.181 4.181 14 N -0.542 5.542 15 Si 0.781 3.219 16 H -0.198 1.198 17 H -0.211 1.211 18 H -0.190 1.190 19 C -0.145 4.145 20 H 0.087 0.913 21 H 0.071 0.929 22 H 0.062 0.938 23 H 0.070 0.930 24 H 0.073 0.927 25 H 0.086 0.914 26 H 0.094 0.906 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.197 0.803 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.902 10.538 7.034 12.812 hybrid contribution 0.555 -1.231 0.320 1.388 sum -1.347 9.307 7.354 11.938 Atomic orbital electron populations 1.21846 0.94003 1.01286 1.01805 1.21204 0.95878 0.95547 0.94199 1.21865 1.00582 0.94454 1.02064 1.22469 1.00918 0.94251 0.96787 1.22281 0.99845 0.96937 0.95010 1.22512 0.98365 0.95538 0.96470 0.92588 1.19157 0.79301 0.90669 0.93275 0.97200 1.86489 1.26525 1.91518 1.33609 1.22067 1.30522 0.96710 1.11838 0.92280 1.25938 0.95630 1.01795 0.94746 1.70225 1.40385 1.24400 1.19182 0.85609 0.79197 0.79028 0.78039 1.19831 1.21067 1.18961 1.22313 0.98929 0.95791 0.97511 0.91292 0.92925 0.93766 0.92986 0.92667 0.91377 0.90616 0.91289 0.92519 0.92810 0.80270 0.93192 0.92795 0.93056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.35 8.15 71.98 0.59 -2.77 16 2 C -0.07 -1.88 0.94 -51.38 -0.05 -1.93 16 3 C -0.13 -2.99 8.15 71.98 0.59 -2.40 16 4 C -0.11 -2.94 5.90 31.67 0.19 -2.76 16 5 C -0.10 -3.67 5.64 31.88 0.18 -3.49 16 6 C -0.11 -4.52 2.73 -9.72 -0.03 -4.55 16 7 H 0.06 2.33 8.14 -2.38 -0.02 2.31 16 8 C 0.23 12.23 2.66 29.85 0.08 12.31 16 9 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 10 O -0.58 -30.57 11.78 -148.98 -1.75 -32.32 16 11 C -0.57 -31.95 8.26 25.60 0.21 -31.74 16 12 H 0.06 3.18 7.39 -2.91 -0.02 3.16 16 13 C 0.02 1.16 5.40 84.66 0.46 1.62 16 14 N -0.90 -55.37 12.84 21.45 0.28 -55.10 16 15 Si 0.96 44.17 29.54 68.60 2.03 46.19 16 16 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 17 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 18 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 19 C -0.11 -3.83 5.60 31.39 0.18 -3.66 16 20 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 21 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 22 H 0.04 1.24 8.14 -2.39 -0.02 1.23 16 23 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 24 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 25 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.08 1.81 7.84 -2.39 -0.02 1.80 16 27 H 0.07 1.77 7.85 -2.38 -0.02 1.75 16 28 H 0.06 2.08 6.10 -2.39 -0.01 2.06 16 29 H 0.05 1.95 7.90 -2.39 -0.02 1.93 16 30 H 0.35 16.75 6.98 -74.06 -0.52 16.23 16 31 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 32 H 0.05 1.83 7.68 -2.39 -0.02 1.81 16 33 H 0.05 2.04 6.70 -2.39 -0.02 2.02 16 Total: -1.00 -63.50 260.81 3.49 -60.01 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: 0.55 Total: 20.57 kcal Atomic # 6 Polarization: -41.75 SS G_CDS: 2.39 Total: -39.36 kcal Atomic # 7 Polarization: -55.37 SS G_CDS: 0.28 Total: -55.10 kcal Atomic # 8 Polarization: -30.57 SS G_CDS: -1.75 Total: -32.32 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.19 kcal Total: -63.50 3.49 -60.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535876554.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.120 kcal (2) G-P(sol) polarization free energy of solvation -63.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds