Wall clock time and date at job start Mon Mar 30 2020 02:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.45195 * 2 1 4 4 C 1.53042 * 109.46118 * 240.03157 * 2 1 3 5 5 C 1.53126 * 109.27463 * 299.16447 * 4 2 1 6 6 C 1.53121 * 109.15868 * 302.34050 * 5 4 2 7 7 C 1.53039 * 109.27488 * 57.65896 * 6 5 4 8 8 H 1.09002 * 109.45550 * 60.83239 * 7 6 5 9 9 C 1.53001 * 109.46191 * 180.80390 * 7 6 5 10 10 N 1.46842 * 109.46496 * 119.97962 * 2 1 3 11 11 N 1.36607 * 110.99681 * 294.17063 * 10 2 1 12 12 C 1.36935 * 120.00053 * 244.20932 * 11 10 2 13 13 H 1.07999 * 120.00083 * 0.02562 * 12 11 10 14 14 C 1.38812 * 119.99632 * 180.02562 * 12 11 10 15 15 N 1.31624 * 119.99535 * 180.02562 * 14 12 11 16 16 Si 1.86798 * 120.00484 * 359.97438 * 14 12 11 17 17 H 1.48493 * 109.47326 * 270.00576 * 16 14 12 18 18 H 1.48506 * 109.46545 * 30.00326 * 16 14 12 19 19 H 1.48498 * 109.47210 * 150.00037 * 16 14 12 20 20 H 1.09002 * 109.46448 * 300.02108 * 1 2 3 21 21 H 1.08999 * 109.47037 * 60.02013 * 1 2 3 22 22 H 1.08998 * 109.47228 * 180.02562 * 1 2 3 23 23 H 1.08990 * 109.50581 * 179.22447 * 4 2 1 24 24 H 1.08998 * 109.53543 * 59.11755 * 4 2 1 25 25 H 1.09001 * 109.51950 * 182.44011 * 5 4 2 26 26 H 1.08990 * 109.52371 * 62.24950 * 5 4 2 27 27 H 1.09004 * 109.50664 * 297.71855 * 6 5 4 28 28 H 1.08993 * 109.53373 * 177.61883 * 6 5 4 29 29 H 1.09000 * 109.47627 * 180.02562 * 9 7 6 30 30 H 1.09010 * 109.46969 * 300.05606 * 9 7 6 31 31 H 1.09003 * 109.47182 * 60.05189 * 9 7 6 32 32 H 0.96999 * 119.99869 * 64.21837 * 11 10 2 33 33 H 0.97005 * 119.99717 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7208 -1.2501 5 6 1.5442 -2.1695 -1.2357 6 6 2.0269 -2.8532 0.0465 7 6 1.5174 -2.0705 1.2589 8 1 0.4275 -2.0609 1.2529 9 6 2.0142 -2.7387 2.5425 10 7 2.0193 -0.6918 1.1993 11 7 1.6901 -0.0015 2.3312 12 6 2.6754 0.5249 3.1230 13 1 3.7128 0.3948 2.8525 14 6 2.3408 1.2259 4.2735 15 7 3.2879 1.7324 5.0344 16 14 0.5464 1.4517 4.7411 17 1 0.0285 2.7010 4.1278 18 1 -0.2428 0.2942 4.2484 19 1 0.4271 1.5392 6.2187 20 1 -0.3632 0.5142 0.8898 21 1 -0.3633 0.5135 -0.8902 22 1 -0.3633 -1.0276 0.0005 23 1 3.1297 -0.7092 -1.2578 24 1 1.6642 -0.2165 -2.1403 25 1 1.9407 -2.6988 -2.1022 26 1 0.4548 -2.1821 -1.2673 27 1 3.1167 -2.8751 0.0592 28 1 1.6420 -3.8722 0.0833 29 1 1.6511 -2.1817 3.4062 30 1 1.6417 -3.7623 2.5869 31 1 3.1042 -2.7482 2.5489 32 1 0.7583 0.1156 2.5740 33 1 3.0541 2.2226 5.8381 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034299884.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:57 Heat of formation + Delta-G solvation = 17.713322 kcal Electronic energy + Delta-G solvation = -13680.072405 eV Core-core repulsion = 11548.065206 eV Total energy + Delta-G solvation = -2132.007199 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.73902 -36.29145 -34.01929 -33.84437 -31.09567 -28.78351 -27.39642 -25.22286 -23.10573 -22.32689 -20.25163 -19.31742 -17.66983 -16.54447 -16.29006 -15.82653 -15.14426 -14.74667 -14.67862 -14.29274 -13.63999 -13.43486 -13.24466 -12.98281 -12.89389 -12.59539 -12.42781 -12.34968 -11.84191 -11.73916 -11.48591 -11.30614 -11.05710 -10.97686 -9.41935 -9.14771 -7.98944 -5.33930 1.32266 1.35994 1.42168 2.46144 2.79220 3.32648 3.78202 3.99300 4.03217 4.19680 4.29522 4.40486 4.51805 4.53913 4.65216 4.69877 4.86528 4.93456 5.03542 5.08717 5.13882 5.16486 5.31264 5.33859 5.41890 5.50008 5.63340 6.03467 6.27353 6.45670 7.21847 7.96031 8.41707 9.22708 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.044620 B = 0.012179 C = 0.011420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.373642 B = 2298.571843 C = 2451.191272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.055 3.945 3 H 0.056 0.944 4 C -0.103 4.103 5 C -0.116 4.116 6 C -0.103 4.103 7 C 0.058 3.942 8 H 0.037 0.963 9 C -0.129 4.129 10 N -0.293 5.293 11 N -0.595 5.595 12 C -0.191 4.191 13 H 0.058 0.942 14 C -0.060 4.060 15 N -0.983 5.983 16 Si 0.946 3.054 17 H -0.280 1.280 18 H -0.261 1.261 19 H -0.292 1.292 20 H 0.029 0.971 21 H 0.079 0.921 22 H 0.069 0.931 23 H 0.058 0.942 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.069 0.931 27 H 0.060 0.940 28 H 0.086 0.914 29 H 0.031 0.969 30 H 0.074 0.926 31 H 0.042 0.958 32 H 0.348 0.652 33 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.607 -8.958 -13.021 17.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.054 4.054 3 H 0.074 0.926 4 C -0.141 4.141 5 C -0.153 4.153 6 C -0.142 4.142 7 C -0.050 4.050 8 H 0.055 0.945 9 C -0.186 4.186 10 N -0.110 5.110 11 N -0.332 5.332 12 C -0.322 4.322 13 H 0.076 0.924 14 C -0.252 4.252 15 N -0.635 5.635 16 Si 0.774 3.226 17 H -0.206 1.206 18 H -0.187 1.187 19 H -0.219 1.219 20 H 0.048 0.952 21 H 0.098 0.902 22 H 0.088 0.912 23 H 0.077 0.923 24 H 0.104 0.896 25 H 0.103 0.897 26 H 0.087 0.913 27 H 0.079 0.921 28 H 0.104 0.896 29 H 0.051 0.949 30 H 0.093 0.907 31 H 0.061 0.939 32 H 0.186 0.814 33 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.901 -8.929 -12.963 17.187 hybrid contribution -1.598 0.702 1.004 2.013 sum -8.499 -8.227 -11.959 16.820 Atomic orbital electron populations 1.22369 0.97121 1.02353 1.01736 1.22313 0.93564 0.98087 0.91422 0.92611 1.21559 1.00852 0.96240 0.95478 1.21615 1.01089 0.94940 0.97644 1.21601 1.01183 0.98637 0.92775 1.22206 0.96789 0.89400 0.96643 0.94516 1.21630 1.00827 0.99419 0.96767 1.62552 1.55706 0.98574 0.94213 1.41944 1.03482 1.64880 1.22939 1.18730 0.88587 1.24105 1.00731 0.92393 1.25202 1.00965 1.01283 0.97735 1.69851 1.32900 1.43455 1.17291 0.85549 0.81441 0.78379 0.77188 1.20591 1.18669 1.21879 0.95186 0.90227 0.91183 0.92274 0.89618 0.89661 0.91253 0.92134 0.89587 0.94945 0.90707 0.93897 0.81391 0.93339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.20 8.29 71.98 0.60 -4.60 16 2 C 0.06 1.88 3.15 44.94 0.14 2.02 16 3 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 4 C -0.10 -2.64 5.61 30.65 0.17 -2.47 16 5 C -0.12 -2.48 5.70 30.68 0.17 -2.30 16 6 C -0.10 -2.64 5.37 30.65 0.16 -2.48 16 7 C 0.06 1.96 2.34 44.94 0.10 2.06 16 8 H 0.04 1.21 6.19 -2.39 -0.01 1.19 16 9 C -0.13 -4.66 9.11 71.98 0.66 -4.00 16 10 N -0.29 -12.01 4.57 -469.57 -2.15 -14.16 16 11 N -0.60 -28.93 3.27 -54.27 -0.18 -29.11 16 12 C -0.19 -11.17 10.79 84.03 0.91 -10.27 16 13 H 0.06 3.80 8.06 -2.91 -0.02 3.78 16 14 C -0.06 -3.61 5.50 84.86 0.47 -3.14 16 15 N -0.98 -63.90 13.97 21.65 0.30 -63.60 16 16 Si 0.95 46.41 27.74 68.60 1.90 48.31 16 17 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 18 H -0.26 -11.80 6.52 99.48 0.65 -11.16 16 19 H -0.29 -14.41 7.11 99.48 0.71 -13.70 16 20 H 0.03 1.00 7.05 -2.39 -0.02 0.98 16 21 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 22 H 0.07 1.86 4.80 -2.39 -0.01 1.85 16 23 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 24 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 25 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.07 1.37 6.56 -2.39 -0.02 1.35 16 27 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.03 1.36 7.46 -2.39 -0.02 1.35 16 30 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 31 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.35 16.48 4.72 -215.49 -1.02 15.46 16 33 H 0.26 15.93 8.31 -92.70 -0.77 15.16 16 Total: -1.00 -67.40 252.56 3.26 -64.14 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: 0.00 Total: 19.58 kcal Atomic # 6 Polarization: -28.55 SS G_CDS: 3.38 Total: -25.17 kcal Atomic # 7 Polarization: -104.84 SS G_CDS: -2.02 Total: -106.87 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 1.90 Total: 48.31 kcal Total: -67.40 3.26 -64.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034299884.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.854 kcal (2) G-P(sol) polarization free energy of solvation -67.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds